mRNA_E-fasciculatus_F_contig12621.2011.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12621.2011.1 vs. uniprot
Match: D8LGF8_ECTSI (OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF8_ECTSI) HSP 1 Score: 624 bits (1610), Expect = 1.110e-223 Identity = 299/307 (97.39%), Postives = 301/307 (98.05%), Query Frame = 1
Query: 1 STIPMQNLTAPGDWNRQNGALKHFNWSEGCFNFHFIDQDTTDGGLSEWEDYQAYRRVLGAIGVVHFPSCEGGHADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKAWRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSKTAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLRDMAKDKELERAGQEGSSTWTVLAEGTV 921
STIPMQNLTAPGDWNRQN ALKHFNWSEGCFNFHFIDQDTTDGGLS+WEDYQAYRRVLGAIGVVHFPSCEGG ADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIK WRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSK AKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALL+DMAKDKELERAGQEGSSTWTVLAE V
Sbjct: 44 STIPMQNLTAPGDWNRQNSALKHFNWSEGCFNFHFIDQDTTDGGLSDWEDYQAYRRVLGAIGVVHFPSCEGGRADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKTWRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLKDMAKDKELERAGQEGSSTWTVLAEAVV 350
BLAST of mRNA_E-fasciculatus_F_contig12621.2011.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE) HSP 1 Score: 621 bits (1602), Expect = 1.630e-206 Identity = 302/321 (94.08%), Postives = 303/321 (94.39%), Query Frame = 1
Query: 1 STIPMQNLTAPGDWNRQNGALKHFNWSEGCFNFHFIDQDTTDGGLSEWEDYQAYRRVLGAIGVVHFPSCEGGHADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKAWRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSKTAKRRVGRLHKWIGDTCLLLGSPK--------------DALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLRDMAKDKELERAGQEGSSTWTVLAEGTV 921
STIPMQNLTAPGDWNRQNGALKHFNWSEGCFNFHFIDQDTTDGGLS+WEDYQAYRRVLGAIGVVHFPSCEGGHADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIK WRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSK AKRRVGRLHKWIGDTCLLLGSPK DALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLRDMAKDKELERAGQEGSSTWTVLAE V
Sbjct: 44 STIPMQNLTAPGDWNRQNGALKHFNWSEGCFNFHFIDQDTTDGGLSDWEDYQAYRRVLGAIGVVHFPSCEGGHADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKTWRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPKCLSVCVLSLLLRPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLRDMAKDKELERAGQEGSSTWTVLAEAVV 364
BLAST of mRNA_E-fasciculatus_F_contig12621.2011.1 vs. uniprot
Match: A0A835ZHG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHG4_9STRA) HSP 1 Score: 230 bits (587), Expect = 1.100e-69 Identity = 129/324 (39.81%), Postives = 173/324 (53.40%), Query Frame = 1
Query: 1 STIPMQNLTAPGDWNRQNGALKHFNWSEGCFNFHFIDQDTTDGGLSEWEDYQAYRRVLGAIGVVHFPSCEGGH-----ADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKAWRSSASPPSAA------------GRAVAVLRGNNDAAPPLTSWYEREE----------------------------VLSDSKTAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALL 837
S +PMQ+LTAPGDW RQN +HF+W+EG F+FHF++ TTDGGLSEW DYQA+RRV A+G+VH PSC G AD L+ + VA Y H R+F F HSFE G P D RDI+ PPE E EGG +A L+++AV++I + ++A+ ++ S A G G + A PPL S + ++ +D A+RR GRL KW+GD LL G+PKDA+E Y + +E A DPLWHAG LEG+AA L A++D + PT + L+
Sbjct: 42 SAVPMQDLTAPGDWTRQNCPFRHFSWTEGAFHFHFVEDGTTDGGLSEWGDYQAHRRVYVALGIVHEPSCRRGDGDKIGADLSLLQAELALAVAPYPHATLQRIFVFEHSFEAGSIPGY-DANRDIILPPEPEGEGGAELLRRFLAEPLHNIAVALITQIEGWVRAYAAALSGGVAGKLSQYMASARGGGXXXXXXAGGDGALPPLRSPLDTDDDNPLANMGASSASLMSAASAVSLTGGGGKAADRARARRRWGRLRKWLGDLALLAGTPKDAVELYDAAAAEL-AKADPLWHAGALEGFAAALVALADDETPTAVPPEIFKLI 363
BLAST of mRNA_E-fasciculatus_F_contig12621.2011.1 vs. uniprot
Match: A0A176VZU1_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VZU1_MARPO) HSP 1 Score: 101 bits (251), Expect = 4.390e-20 Identity = 79/245 (32.24%), Postives = 110/245 (44.90%), Query Frame = 1
Query: 49 QNGALKHFNWSEGCFNFHFIDQDTTDGGL--SEWEDYQAYRRVLGAIGVVHFPSCEGGHADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKAWRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSKTAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACL 777
Q +W G F F+ GG S WED+QA R+ LG IG++H P+ D F + Y R FA + Q + D Q ++FPP+++ E H+ + D A S++ ++W A P A+L D+ L S EEV SK KRR+GR+ K IGD CLL GSP DA HYS ++ + + D LWHAG +EG + L
Sbjct: 54 QKSPFAQQSWDTGSLCFKFLV-----GGAPRSPWEDFQANRKCLGVIGLMHCPTTP----DIGAAYDHFMAICRAYPSAQEKRCFALYPTDGQVEL-DEKKRQHLVMFPPDRQM------LEYHLQTLMQDFAASLLMAF----ESWVLHAEP------VGAILTTPLDSQASLNS----EEV---SKAKKRRLGRVQKTIGDYCLLAGSPVDANAHYSTAIDLARLTGDLLWHAGAIEGSVSAL 265
BLAST of mRNA_E-fasciculatus_F_contig12621.2011.1 vs. uniprot
Match: A0A7S2RQA9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RQA9_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 6.580e-19 Identity = 79/282 (28.01%), Postives = 130/282 (46.10%), Query Frame = 1
Query: 1 STIPMQNLTAPGDWNRQNGALKHFNWSEGCFNFHFIDQ-----DTTDGGLSEWEDYQAYRRVLGAIGVVHFPSCEGGHADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQGDYPD----ILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKAW-----------RSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEV---LSDSKTAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACL 777
STI +Q +T ++ + NW EG F+F+ Q D+ W + QA+++ + IG+ P+ +D + F ++VA Y +R AF + Q + + +L DI FPPE+ E G ++ + HM V L ++A +++++ A +K RSS + R + N D ++ E + L++SKT KR++GRL WIG LL GSP+DAL +++S+ + D W LEG A L
Sbjct: 36 STISLQQVTPFPGYSTSTSCFEFQNWQEGELRFNFVVQPEEVEDSQTLHHLGWHNLQAHKKCVAIIGICDCPNT----SDLRASLDDFQKLVAKYPEGTVSRWCAFNMTDSQLEDEECLKHLLSNGMDI-FPPEKLLEEGRTSFDYHMEVVLTNMASTLLEHFEAIVKEGLKNIALVENTKRSSQNEGDTRSR----VDSNIDILLHGATYAGDEAIAASLNESKTKKRKIGRLEAWIGGYSLLAGSPRDALNFFNRSILNCATNGDIAWQGVALEGSACAL 308
BLAST of mRNA_E-fasciculatus_F_contig12621.2011.1 vs. uniprot
Match: UPI001CB9887D (trafficking protein particle complex II-specific subunit 120 homolog n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9887D) HSP 1 Score: 94.7 bits (234), Expect = 7.180e-18 Identity = 71/223 (31.84%), Postives = 104/223 (46.64%), Query Frame = 1
Query: 142 WEDYQAYRRVLGAIGVVHFPSCEGGHADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQGDYPDILDPQRD-----IVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKAWRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSKTAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDA 795
WED+ AYR++ G IG+ H PS D + QF + +R FAF + Q L+ +R+ ++FPP + E H+ + D+A S++ + + W A +GR + L+ D+ L+S EE + K KR+ R K IGD CLL GSP DA HYS ++ T+ + D W+AG LEG C MS A
Sbjct: 83 WEDFHAYRKIHGVIGICHCPSSP----DLDSVAVQFGLACKEFPSSLVSRCFAFSPADSQ------LEGERNKGNKLVLFPPSNQ-----RAQEFHLQTMMQDIAASLLM----EFEKWVVEAE----SGRTL--LKTPLDSQASLSS----EEAI---KAKKRKNARAQKAIGDYCLLAGSPLDATSHYSTALELTRMTGDYFWYAGALEG-GVCAFLMSKA 272
BLAST of mRNA_E-fasciculatus_F_contig12621.2011.1 vs. uniprot
Match: D8SAV7_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SAV7_SELML) HSP 1 Score: 93.2 bits (230), Expect = 2.340e-17 Identity = 75/252 (29.76%), Postives = 114/252 (45.24%), Query Frame = 1
Query: 76 WSEGCFNFHFIDQDTTDGGLSEWEDYQAYRRVLGAIGVVHFPSCEGGHADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQG---DYPDILDP--------------------QRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKAWRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSKTAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEG 762
W GC F F+ S+WED+QA+R+V G IGV+H P AD ++F ++ Y R FAF + EQ + +++D Q+ ++FPP + + H+ ++D A SI+ A+ S G A L D+ L+S EEV SK +RR+ R+ K +GD LL GSP DA+ HY+ +M ++ + D LW+AG +EG
Sbjct: 63 WENGCLRFQFV---IGRANRSQWEDFQAHRKVHGCIGVLHCPDV----ADLDAAYEKFVEICNEYPAAQTRRCFAFSPTQEQALLLFFLELMDSFNLHFIFLAYRRVEQDDKKRQQMVLFPPVDK-----QMLKHHVGTLMHDFAASILM-------AFESRVLLAEPMG---ATLTTPMDSHVSLSS----EEV---SKAKRRRLERVQKTMGDYSLLAGSPADAISHYNTAMELSRHTGDSLWNAGEIEG 285
BLAST of mRNA_E-fasciculatus_F_contig12621.2011.1 vs. uniprot
Match: A0A0D2X4E8_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X4E8_CAPO3) HSP 1 Score: 75.5 bits (184), Expect = 2.100e-11 Identity = 64/235 (27.23%), Postives = 104/235 (44.26%), Query Frame = 1
Query: 127 GGLSEWEDYQAYRRVLGAIGVVHFPSCEGGHADFKELEKQFNQVVAGYKHVHATRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKAWRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSK----TAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGD 819
G E D+ +R L G+++ C+ D + ++F + + V R FAF Q D ++ ++ P Q E + +++ L D+ +S++ LAA A + R + P L ER + D++ K+ VGR K GD CLL+GSP DA+ HY++++ +TK++ D L+ AGCLE +AA L P V D
Sbjct: 268 GFNDELIDFHFSKRTLVIFGIIN---CQHT-VDLRLAYREFQAACSQFPTVLDVRCFAFEPQDAQEDN------EKHVILIPNQAREH----VQFYISTILNDMTLSLVHLLAA--------------AHHSKIAERDDKKLLPSLL--LERTGGIDDARFYNANRKKIVGRFEKLAGDICLLVGSPDDAIVHYTEAIEQTKSANDWLYLAGCLECFAATLLVKHKMGDPLVLSD 472
BLAST of mRNA_E-fasciculatus_F_contig12621.2011.1 vs. uniprot
Match: A0A1X6P8K3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8K3_PORUM) HSP 1 Score: 75.1 bits (183), Expect = 3.000e-11 Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 580 REEVLSDSKTAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLS 780
R+ V SK AKRR+GRL KW+GD LL+GSP DAL Y+ ++ ++A++D LW AG EG AA L+
Sbjct: 503 RQTVDKQSKLAKRRLGRLDKWLGDYFLLIGSPSDALTKYNSAVERSRANSDRLWLAGATEGAAAALA 569
BLAST of mRNA_E-fasciculatus_F_contig12621.2011.1 vs. uniprot
Match: A0A4D9D6X0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6X0_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.680e-10 Identity = 53/182 (29.12%), Postives = 79/182 (43.41%), Query Frame = 1
Query: 358 IVFPPEQE-FEGGGSTTELHMAVSLYDVAVSIIKNLAADIKAWRSSASPP------------------------------------SAAGRAVAVLRGNNDAA--PPLTSWYEREEVLSDSKTAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAM 786
++FPPE + E G S E HM V L D+AV ++ L A++ ++ G+ +A LR D P L + + GR KW+GD CLL G+P+DALE Y+Q+++E KA+ +PLW AG LEG+ A + +
Sbjct: 177 VIFPPEGDPKERGVSMVEAHMGVMLSDLAVVVLSRLEAEVAGAKAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKGTGLAKRGGQWLAQLRSPADGGGGPRLARGGQAGGQHVELGGGGGDRGRWGKWVGDLCLLAGTPQDALEAYAQALAECKAAGEPLWQAGALEGWIASVGVL 358 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12621.2011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12621.2011.1 >prot_E-fasciculatus_F_contig12621.2011.1 ID=prot_E-fasciculatus_F_contig12621.2011.1|Name=mRNA_E-fasciculatus_F_contig12621.2011.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=303bp MQNLTAPGDWNRQNGALKHFNWSEGCFNFHFIDQDTTDGGLSEWEDYQAYback to top mRNA from alignment at E-fasciculatus_F_contig12621:701..3860- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12621.2011.1 ID=mRNA_E-fasciculatus_F_contig12621.2011.1|Name=mRNA_E-fasciculatus_F_contig12621.2011.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3160bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12621:701..3860- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12621:701..3860- >mRNA_E-fasciculatus_F_contig12621.2011.1 ID=mRNA_E-fasciculatus_F_contig12621.2011.1|Name=mRNA_E-fasciculatus_F_contig12621.2011.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1818bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12621:701..3860- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |