mRNA_E-fasciculatus_F_contig12613.2007.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12613.2007.1
Unique NamemRNA_E-fasciculatus_F_contig12613.2007.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12613.2007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12613contigE-fasciculatus_F_contig12613:877..3147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_002850.1
Exons3
Model size387
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12613.2007.1prot_E-fasciculatus_F_contig12613.2007.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12613 877..3147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927770.2653358-CDS-E-fasciculatus_F_contig12613:876..9961622927770.2653358-CDS-E-fasciculatus_F_contig12613:876..996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12613 877..996 -
1695995686.4698532-CDS-E-fasciculatus_F_contig12613:876..9961695995686.4698532-CDS-E-fasciculatus_F_contig12613:876..996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12613 877..996 -
1622927770.2820768-CDS-E-fasciculatus_F_contig12613:1281..13271622927770.2820768-CDS-E-fasciculatus_F_contig12613:1281..1327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12613 1282..1327 -
1695995686.482146-CDS-E-fasciculatus_F_contig12613:1281..13271695995686.482146-CDS-E-fasciculatus_F_contig12613:1281..1327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12613 1282..1327 -
1622927770.2963128-CDS-E-fasciculatus_F_contig12613:2926..31471622927770.2963128-CDS-E-fasciculatus_F_contig12613:2926..3147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12613 2927..3147 -
1695995686.4930315-CDS-E-fasciculatus_F_contig12613:2926..31471695995686.4930315-CDS-E-fasciculatus_F_contig12613:2926..3147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12613 2927..3147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12613.2007.1

>prot_E-fasciculatus_F_contig12613.2007.1 ID=prot_E-fasciculatus_F_contig12613.2007.1|Name=mRNA_E-fasciculatus_F_contig12613.2007.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=129bp
MVVVVVVLVVLVVACEGGGSEKQSRDRKQRRVRLWRDEVRQSCERQACRN
PGTKTSGGGGIRSMDMCCGWVLSKLSGAMQQSQDSSVITGQRLRSRARPS
ITIASWRSRARERPRNLLRHTTTTRCVSI
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mRNA from alignment at E-fasciculatus_F_contig12613:877..3147-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12613.2007.1 ID=mRNA_E-fasciculatus_F_contig12613.2007.1|Name=mRNA_E-fasciculatus_F_contig12613.2007.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2271bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12613:877..3147- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGTGGTGGTGGTGGTGCTGGTGGTGCTGGTGGTGGCATGCGAGGG
AGGAGGAAGCGAAAAGCAAAGTCGAGACAGGAAGCAACGCCGGGTGCGAC
TTTGGCGGGACGAGGTTCGGCAGTCTTGCGAGAGGCAAGCGTGCCGCAAC
CCTGGAACAAAAACGAGTGGAGGCGGTGGGATCAGATCCATGGACATGTG
CTGTGGATGGGTACTCTCCAAGTGAGTGAGGCGAATCTTTTGCCCCGAAG
TCGATGCTGTTGCTTCTGGGACTTGTACTTTCTTTCTTTGCAGAGGTGAG
AGATGTTGAGGGATACGTTGGATCTCCGAAATAATGGGAGATTTTAGATG
CGGTGGAATTAGACTACATGTGAACATCATCAGAGAAGGACGGTGGTGCG
GTGACAAGGACAGGACAACCTGGACGTACGAAACAAGAACAACATCAATA
TTACTAACATCGTCTACCATGAACCTATGAAACTGGATCTGGATTAATTT
CCAGCAATGATGAAGAGCAAACCTCACGTCGAAGCGAGAGATACATAGAC
TACATCCACAATTCGACAAAATGCCAGATATGGGTCAATGCCTGTAGGGG
TTGACAACGTAAAAATCTCGTATGTATGTAGAACTGGATGAGTATTTCGT
GTGCTCGCGAACAAAAAAACGACGACGTATATGTACAGCAGTATGCATAT
AGGACCTGTCATGGAAGAAGCTAGCTGCATAATAGCTGCATGTATGTTGT
AGGAGCTATTGTGAATTGCATGCGGCGGGGGGCTTGGGCCTGCTCATGTA
CTTCCACACGATTGGGTGAGGAGTTCATGAAAACAGTCGATGAGGACAAT
TGCTCAACCTCATCGAATGTTTTCATCAACTCTAGCTAGTCTATAACTAC
GAGATTTGAGACTAGTCTACGTTGTTGTCATCTCTACAGGCATTGGCCCA
TCTGGCATCTTGTCGAAGTTGTTGATATCTTCGCCGTTCTTCACTTCGAC
GTGAGGTTGCTCTTCTTCGACGTGACGTTGCTCTTCATCGCTGGAAATAT
ATAAGATCCTCCAGATCCAGTTTCCGATGATGCCAGGTCCATACATGGTA
GTCTACAATCTTTGCCGGCGTCTTTTACAAGTAAATTTTTTGTACTGACG
CACGTTGTATGGTCAAGCATGTTGGGTTAGACAACCCGACACGAGCCAGG
CCGGAGGCATGTGAGTTTATGTGGGACGACTACACATATTCTTGTGTAGT
CGTCATACTGGGAAGGGGACGCGGTCTTTGTCTATAATTTCGATCGAAGG
CTCGCTCCTACATGCACTATTTTCTATTTGTACTCGAGACTACGGTGGTA
CTACATAGACTATACGCATACATCACTGTTGTTGTAGTCTACAGCAGTAC
ATAGACTTTTTATATACCATAGCAAAGATATGTGCACCCCGCTCCATTCC
TTGTGGAGCACTGTCAATTCCAAATGTCAATGTCCAATGCCCACTGAACC
AATAGAAAAGTATCCGCATCGACCGGTAAGTGTATACGTAAGCAAATCAA
GATGTGAAAGGCATCATCGCCTTGCTTATTATGTGCATGCTCGAGCAAGA
CGAGGACCTCAAGAACATCAGCCGTTCTTCCGGTTAAATAAATGAGTATG
TTTGGGTCCCCCTCTTGTGTCTTGGAAAACGTATGATCATTGGGTCATGG
AACGCACTGCCTATCCCGGCTAGACTATTGTATTATGTTATTATCGTCGT
TATCGCCGCTGTGTACGATTGTTTCATTTGAACGTCACGCTCTATTGATG
ATGATGCTTTCCGTTTGTAGGCTGAGTGGAGCAATGCAACAATCGCAGGA
TTCTTCCGTCATCACGGTAAGAGCCAATTGCTGGAGTGGTGCAACATTGC
AGGCATTGAGGAAGATATCATCAACAAGCTGCATGTATGTATCACCCCCA
CCAGCGTGAAACGAAACAGAAGGCGATTGAAACGATATCCCCCGTTCAAT
GGTTATTCGCACGGAACAAGGAGCCACAACTAGAGAGAGATTGGTCTGAT
TGTGCTCCATCGATGAGCGCCTAACTCAATGATGTATCTAGTCTACGACG
TGGAGCTTCACTCTCTTGTTTTCCGGCAACTCATATTTCGCGTTTTTCCA
GGGGCAGAGGTTACGGTCACGCGCAAGGCCCTCGATAACTATTGCTTCGT
GGCGTTCGCGAGCACGCGAGAGGCCAAGGAATTTATTGCGACATACAACC
ACCACCCGTTGCGTGAGTATT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12613:877..3147-

>mRNA_E-fasciculatus_F_contig12613.2007.1 ID=mRNA_E-fasciculatus_F_contig12613.2007.1|Name=mRNA_E-fasciculatus_F_contig12613.2007.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=774bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12613:877..3147- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGTGGTGGTGGTGGTGCTGGTGGTGCTGGTGGTGGCATGCGAGGG
AGGAGGAAGCGAAAAGCAAAGTCGAGACAGGAAGCAACGCCGGGTGCGAC
TTTGGCGGGACGAGGTTCGGCAGTCTTGCGAGAGGCAAGCGTGCCGCAAC
CCTGGAACAAAAACGAGTGGAGGCGGTGGGATCAGATCCATGGACATGTG
CTGTGGATGGGTACTCTCCAAATGGTGGTGGTGGTGGTGGTGCTGGTGGT
GCTGGTGGTGGCATGCGAGGGAGGAGGAAGCGAAAAGCAAAGTCGAGACA
GGAAGCAACGCCGGGTGCGACTTTGGCGGGACGAGGTTCGGCAGTCTTGC
GAGAGGCAAGCGTGCCGCAACCCTGGAACAAAAACGAGTGGAGGCGGTGG
GATCAGATCCATGGACATGTGCTGTGGATGGGTACTCTCCAAGCTGAGTG
GAGCAATGCAACAATCGCAGGATTCTTCCGTCATCACGGCTGAGTGGAGC
AATGCAACAATCGCAGGATTCTTCCGTCATCACGGGGCAGAGGTTACGGT
CACGCGCAAGGCCCTCGATAACTATTGCTTCGTGGCGTTCGCGAGCACGC
GAGAGGCCAAGGAATTTATTGCGACATACAACCACCACCCGTTGCGTGAG
TATTGGGCAGAGGTTACGGTCACGCGCAAGGCCCTCGATAACTATTGCTT
CGTGGCGTTCGCGAGCACGCGAGAGGCCAAGGAATTTATTGCGACATACA
ACCACCACCCGTTGCGTGAGTATT
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