mRNA_E-fasciculatus_F_contig12551.1956.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12551.1956.1
Unique NamemRNA_E-fasciculatus_F_contig12551.1956.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12551.1956.1 vs. uniprot
Match: D8LC49_ECTSI (TPR Domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC49_ECTSI)

HSP 1 Score: 426 bits (1096), Expect = 9.100e-145
Identity = 225/247 (91.09%), Postives = 231/247 (93.52%), Query Frame = 1 
Query:    1 LGVEREHLGQLDAAIASYKDARSAADQHLGPESPIAKGIEIALEKASAAAVTAASYSRKRAASRSRVAVSSFPCIGKLKFGKKNSQVVSSSRFGGEGLSPRCRSQQQQHGEETAEEATARDLLEYAYTSPRPCPAPPHKASWARLGHVPTPRSAPPARSASRGPQRAGRWTSVDAPAARAVKEAQRRSEGWRNGGRQRGGVDGDLRWRALACAEWQCSPREALHAQRQVAEQHGVDVGVASPTGDAT 741
            LGVEREHLGQLDAAIASYK ARSAADQHLGPESP+AKGIE ALEKASAAA TAASYSRKRAASRSRVAVSSFPCIGKLKFG+KNSQV   SRF G GLSPRCRSQQQ HGEE   EATARDLLE+AYTSPRPCPAPPHK SWARLGHVPTPRSAPPARSASRGPQRAGRWTSVD PAARA+KEAQRRSEGWRNGGR+RG VDGDLRWRALACAEWQCSPREALHAQRQVAEQHGVDVGVA+PT DAT
Sbjct:  353 LGVEREHLGQLDAAIASYKYARSAADQHLGPESPVAKGIETALEKASAAAATAASYSRKRAASRSRVAVSSFPCIGKLKFGQKNSQVP--SRFDGVGLSPRCRSQQQ-HGEEVVGEATARDLLEHAYTSPRPCPAPPHKGSWARLGHVPTPRSAPPARSASRGPQRAGRWTSVDTPAARAMKEAQRRSEGWRNGGRKRGDVDGDLRWRALACAEWQCSPREALHAQRQVAEQHGVDVGVAAPTSDAT 596
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12551.1956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC49_ECTSI9.100e-14591.09TPR Domain containing protein n=2 Tax=Ectocarpus T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12551contigE-fasciculatus_F_contig12551:3227..3970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-20_004460.1
Hectar predicted targeting categoryother localisation
Exons1
Model size744
Cds size744
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927762.1727376-CDS-E-fasciculatus_F_contig12551:3226..39701622927762.1727376-CDS-E-fasciculatus_F_contig12551:3226..3970Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12551 3227..3970 -
1695995683.7115262-CDS-E-fasciculatus_F_contig12551:3226..39701695995683.7115262-CDS-E-fasciculatus_F_contig12551:3226..3970Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12551 3227..3970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12551.1956.1prot_E-fasciculatus_F_contig12551.1956.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12551 3227..3970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12551.1956.1

>prot_E-fasciculatus_F_contig12551.1956.1 ID=prot_E-fasciculatus_F_contig12551.1956.1|Name=mRNA_E-fasciculatus_F_contig12551.1956.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=248bp
LGVEREHLGQLDAAIASYKDARSAADQHLGPESPIAKGIEIALEKASAAA
VTAASYSRKRAASRSRVAVSSFPCIGKLKFGKKNSQVVSSSRFGGEGLSP
RCRSQQQQHGEETAEEATARDLLEYAYTSPRPCPAPPHKASWARLGHVPT
PRSAPPARSASRGPQRAGRWTSVDAPAARAVKEAQRRSEGWRNGGRQRGG
VDGDLRWRALACAEWQCSPREALHAQRQVAEQHGVDVGVASPTGDAT*
back to top

mRNA from alignment at E-fasciculatus_F_contig12551:3227..3970-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12551.1956.1 ID=mRNA_E-fasciculatus_F_contig12551.1956.1|Name=mRNA_E-fasciculatus_F_contig12551.1956.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12551:3227..3970- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTGGGGTCGAGAGGGAACATCTTGGCCAGCTGGACGCTGCAATTGCCTC
GTACAAGGACGCGCGTTCGGCGGCCGACCAGCATCTTGGGCCGGAGAGCC
CCATCGCGAAAGGGATCGAGATCGCGCTCGAGAAAGCCTCCGCCGCCGCC
GTCACCGCCGCCTCCTACTCCCGCAAGCGCGCGGCTTCACGCTCCCGAGT
GGCGGTGTCGTCCTTCCCTTGCATAGGCAAGCTCAAGTTCGGCAAAAAAA
ACTCGCAAGTAGTGTCATCGTCGCGCTTCGGCGGCGAGGGCCTTTCCCCG
CGATGCCGGTCACAGCAGCAGCAGCATGGCGAGGAGACCGCGGAAGAAGC
AACGGCAAGGGACCTCCTCGAGTACGCGTACACCAGCCCTCGCCCGTGCC
CTGCCCCACCCCACAAAGCCTCATGGGCACGCCTCGGGCACGTACCGACC
CCTCGATCGGCCCCTCCAGCACGGTCGGCGTCGCGTGGCCCTCAACGGGC
GGGTAGGTGGACGAGCGTCGACGCCCCGGCGGCGCGAGCGGTCAAGGAAG
CGCAGCGGCGGTCGGAAGGGTGGAGAAACGGCGGCAGGCAGCGTGGCGGT
GTCGACGGGGATTTGAGGTGGCGGGCCTTGGCTTGTGCTGAGTGGCAGTG
CAGTCCGAGGGAGGCACTGCACGCCCAGCGGCAGGTTGCGGAGCAACACG
GGGTGGATGTTGGTGTGGCTTCGCCAACGGGTGATGCTACATAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12551:3227..3970-

>mRNA_E-fasciculatus_F_contig12551.1956.1 ID=mRNA_E-fasciculatus_F_contig12551.1956.1|Name=mRNA_E-fasciculatus_F_contig12551.1956.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1488bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12551:3227..3970- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTGGGGTCGAGAGGGAACATCTTGGCCAGCTGGACGCTGCAATTGCCTC
GTACAAGGACGCGCGTTCGGCGGCCGACCAGCATCTTGGGCCGGAGAGCC
CCATCGCGAAAGGGATCGAGATCGCGCTCGAGAAAGCCTCCGCCGCCGCC
GTCACCGCCGCCTCCTACTCCCGCAAGCGCGCGGCTTCACGCTCCCGAGT
GGCGGTGTCGTCCTTCCCTTGCATAGGCAAGCTCAAGTTCGGCAAAAAAA
ACTCGCAAGTAGTGTCATCGTCGCGCTTCGGCGGCGAGGGCCTTTCCCCG
CGATGCCGGTCACAGCAGCAGCAGCATGGCGAGGAGACCGCGGAAGAAGC
AACGGCAAGGGACCTCCTCGAGTACGCGTACACCAGCCCTCGCCCGTGCC
CTGCCCCACCCCACAAAGCCTCATGGGCACGCCTCGGGCACGTACCGACC
CCTCGATCGGCCCCTCCAGCACGGTCGGCGTCGCGTGGCCCTCAACGGGC
GGGTAGGTGGACGAGCGTCGACGCCCCGGCGGCGCGAGCGGTCAAGGAAG
CGCAGCGGCGGTCGGAAGGGTGGAGAAACGGCGGCAGGCAGCGTGGCGGT
GTCGACGGGGATTTGAGGTGGCGGGCCTTGGCTTGTGCTGAGTGGCAGTG
CAGTCCGAGGGAGGCACTGCACGCCCAGCGGCAGGTTGCGGAGCAACACG
GGGTGGATGTTGGTGTGGCTTCGCCAACGGGTGATGCTACATAGCTTGGG
GTCGAGAGGGAACATCTTGGCCAGCTGGACGCTGCAATTGCCTCGTACAA
GGACGCGCGTTCGGCGGCCGACCAGCATCTTGGGCCGGAGAGCCCCATCG
CGAAAGGGATCGAGATCGCGCTCGAGAAAGCCTCCGCCGCCGCCGTCACC
GCCGCCTCCTACTCCCGCAAGCGCGCGGCTTCACGCTCCCGAGTGGCGGT
GTCGTCCTTCCCTTGCATAGGCAAGCTCAAGTTCGGCAAAAAAAACTCGC
AAGTAGTGTCATCGTCGCGCTTCGGCGGCGAGGGCCTTTCCCCGCGATGC
CGGTCACAGCAGCAGCAGCATGGCGAGGAGACCGCGGAAGAAGCAACGGC
AAGGGACCTCCTCGAGTACGCGTACACCAGCCCTCGCCCGTGCCCTGCCC
CACCCCACAAAGCCTCATGGGCACGCCTCGGGCACGTACCGACCCCTCGA
TCGGCCCCTCCAGCACGGTCGGCGTCGCGTGGCCCTCAACGGGCGGGTAG
GTGGACGAGCGTCGACGCCCCGGCGGCGCGAGCGGTCAAGGAAGCGCAGC
GGCGGTCGGAAGGGTGGAGAAACGGCGGCAGGCAGCGTGGCGGTGTCGAC
GGGGATTTGAGGTGGCGGGCCTTGGCTTGTGCTGAGTGGCAGTGCAGTCC
GAGGGAGGCACTGCACGCCCAGCGGCAGGTTGCGGAGCAACACGGGGTGG
ATGTTGGTGTGGCTTCGCCAACGGGTGATGCTACATAG
back to top