mRNA_E-fasciculatus_F_contig12532.1947.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12532.1947.1
Unique NamemRNA_E-fasciculatus_F_contig12532.1947.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12532.1947.1 vs. uniprot
Match: A0A6H5KNT1_9PHAE (Carrier domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNT1_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 5.370e-65
Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 1
Query:    1 SALPEGNVGEIWVTSKSRAAGYWSEPEKTAEAFGGRLANDGDGPAPVAEGSLGHVAPADGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERTAEGAVAGSVR 330
            SALPEGNVGEIWVTSKSRAAGYWS+PEKTAEAFGGRLANDGDGPAP AEGS+GH AP DGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERTAEGAVAGS+R
Sbjct:  420 SALPEGNVGEIWVTSKSRAAGYWSQPEKTAEAFGGRLANDGDGPAPAAEGSVGHGAPVDGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERTAEGAVAGSLR 529          
BLAST of mRNA_E-fasciculatus_F_contig12532.1947.1 vs. uniprot
Match: A0A7S1C448_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C448_9STRA)

HSP 1 Score: 133 bits (334), Expect = 6.980e-34
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    7 LPEGNVGEIWVTSKSRAAGYWSEPEKTAEAFGGRLANDGDGPAPVAEGSLGHVAPADGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERTAE 306
            LP+G VGEIW+ S S+A GYW +PEK+A  F G LA  G      ++G  G  A ADGYL+TGDLGF+++GEL++CGR KDLIIVRGRNHYPQD+ER  E
Sbjct:  435 LPDGRVGEIWIDSPSKADGYWGQPEKSAADFHGALAAAGGDGGGESKGGEGRPAAADGYLRTGDLGFVYKGELFVCGRAKDLIIVRGRNHYPQDIERCIE 534          
BLAST of mRNA_E-fasciculatus_F_contig12532.1947.1 vs. uniprot
Match: F0YID9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YID9_AURAN)

HSP 1 Score: 122 bits (307), Expect = 3.160e-30
Identity = 60/110 (54.55%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 SALPEGNVGEIWVTSKSRAAGYWSEPEKTAEAFGGRLANDGDGPAPVAEGSLGHVAPADGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERTAEGAVAGSVR 330
            +A  +G VGEIW+ S SRA GYW  PEK+A  FG     D            G V PA G+L+TGDLGF  EGEL++CGR+KDL+IVRG+NHYPQDLE+T E A  G+ R
Sbjct:  223 AAAADGAVGEIWLRSPSRARGYWKCPEKSAADFGASRPGDAAATFVPGRARFGDVEPA-GWLRTGDLGFFHEGELFVCGRLKDLLIVRGKNHYPQDLEKTWEDAARGAFR 331          
BLAST of mRNA_E-fasciculatus_F_contig12532.1947.1 vs. uniprot
Match: A0A7S3GWC0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWC0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 7.860e-30
Identity = 60/108 (55.56%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    7 LPEGNVGEIWVTSKSRAAGYWSEPEKTAEAFGGRLANDGDGPAPVAEGSLGHVAPADGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERTAEGAVAGSVR 330
            L EG VGEIW+ S S+A GYW++P  +   F   +  D     P+A       A ADGYL+TGDLGFL+  EL+ICGR+KDLIIVRG NHYPQD+ERTAE A A  +R
Sbjct:  486 LEEGVVGEIWIASHSKAKGYWNQPVLSLHEFHAHVDRDTANLTPMAA-----AAVADGYLRTGDLGFLYNSELFICGRMKDLIIVRGSNHYPQDIERTAEAAQADYLR 588          
BLAST of mRNA_E-fasciculatus_F_contig12532.1947.1 vs. uniprot
Match: A0A7S2MW75_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MW75_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.150e-28
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    7 LPEGNVGEIWVTSKSRAAGYWSEPEKTAEAFGGRL---ANDGDGPAPVAEGSLGHVAPADGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERTAEGAV 315
            +  GNVGEIWV S S+AAGY+++P++T E F  ++   A+D DG    AE           YLKTGDLGF+++ EL+ICGRIKDLIIV GRN+YPQD+E TA+ AV
Sbjct:   90 VDNGNVGEIWVRSASKAAGYYNKPDETTEDFHAKISKAADDDDGEEGDAE-----------YLKTGDLGFMYKEELFICGRIKDLIIVGGRNYYPQDIEETAQEAV 184          
BLAST of mRNA_E-fasciculatus_F_contig12532.1947.1 vs. uniprot
Match: UPI001AC8BC9B (Nonribosomal peptide synthetase DhbF n=1 Tax=Thermoflexales bacterium TaxID=2497639 RepID=UPI001AC8BC9B)

HSP 1 Score: 116 bits (291), Expect = 4.720e-28
Identity = 55/95 (57.89%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   22 VGEIWVTSKSRAAGYWSEPEKTAEAFGGRLANDGDGPAPVAEGSLGHVAPADGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERTAE 306
            VGEIWV   S   GYW++PEKTAE FG  LA  GDGP                +L+TGDLGFL EGEL++ GR+KDLII+RGRNHYPQD+E+T E
Sbjct:  410 VGEIWVAGPSVVQGYWNQPEKTAETFGAHLAGTGDGP----------------FLRTGDLGFLHEGELFVTGRLKDLIIIRGRNHYPQDIEQTVE 488          
BLAST of mRNA_E-fasciculatus_F_contig12532.1947.1 vs. uniprot
Match: A0A7S2HQ97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ97_9STRA)

HSP 1 Score: 115 bits (289), Expect = 8.450e-28
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    4 ALPEGNVGEIWVTSKSRAAGYWSEPEKTAEAFGGRLAN-DGDGPAPVAEGSLGHVAPADGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERTAEGAVAGSVR 330
            AL +  VGEIWV S+SRA GYW   EKTAE FGG+L + + DG   V    +G       +L+TGDLGF+   EL+ICGR+KDLII+RGRN +PQD+ER  E A  G +R
Sbjct:  423 ALAQDEVGEIWVRSRSRAEGYWGLEEKTAEDFGGQLVDKEPDGFLEVGSNPMG-------FLRTGDLGFMHNDELFICGRMKDLIIIRGRNIFPQDIERAVEDAFVGKLR 525          
BLAST of mRNA_E-fasciculatus_F_contig12532.1947.1 vs. uniprot
Match: A0A7S2HQA0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQA0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 8.610e-28
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    4 ALPEGNVGEIWVTSKSRAAGYWSEPEKTAEAFGGRLAN-DGDGPAPVAEGSLGHVAPADGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERTAEGAVAGSVR 330
            AL +  VGEIWV S+SRA GYW   EKTAE FGG+L + + DG   V    +G       +L+TGDLGF+   EL+ICGR+KDLII+RGRN +PQD+ER  E A  G +R
Sbjct:  423 ALAQDEVGEIWVRSRSRAEGYWGLEEKTAEDFGGQLVDKEPDGFLEVGSNPMG-------FLRTGDLGFMHNDELFICGRMKDLIIIRGRNIFPQDIERAVEDAFVGKLR 525          
BLAST of mRNA_E-fasciculatus_F_contig12532.1947.1 vs. uniprot
Match: UPI00167AB38C (non-ribosomal peptide synthetase n=1 Tax=Streptomyces finlayi TaxID=67296 RepID=UPI00167AB38C)

HSP 1 Score: 115 bits (289), Expect = 8.780e-28
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    7 LPEGNVGEIWVTSKSRAAGYWSEPEKTAEAFGGRLANDGDGPAPVAEGSLGHVAPADGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERT 300
            +P G VGEIW++ +S A GYW+ P KTA+ FG RLA +  G            A   G+L+TGDLG L EGELY+ GR+KDLIIVRGRNHYPQD+E+T
Sbjct:  392 VPAGAVGEIWLSGQSVAQGYWNRPRKTADTFGVRLATEATG-----------AASGTGFLRTGDLGLLHEGELYVTGRLKDLIIVRGRNHYPQDIEQT 478          
BLAST of mRNA_E-fasciculatus_F_contig12532.1947.1 vs. uniprot
Match: A0A5C2CWQ6_9BACT (AMP-dependent synthetase and ligase n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A5C2CWQ6_9BACT)

HSP 1 Score: 115 bits (288), Expect = 1.210e-27
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   16 GNVGEIWVTSKSRAAGYWSEPEKTAEAFGGRLANDGDGPAPVAEGSLGHVAPADGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERTAEGAVAG 321
            G VGEIWV+S+S A GYW  PE+T   FG RLA  G+GP                +L+TGDLG++ +GEL++ GR+KDLII+RGRNHYPQD+E TAE + AG
Sbjct:  406 GEVGEIWVSSQSVAGGYWGRPEETERTFGARLAGTGEGP----------------FLRTGDLGYMRDGELFVTGRLKDLIILRGRNHYPQDIELTAERSHAG 491          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12532.1947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNT1_9PHAE5.370e-6594.55Carrier domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S1C448_9STRA6.980e-3461.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
F0YID9_AURAN3.160e-3054.55Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3GWC0_9STRA7.860e-3055.56Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A7S2MW75_9STRA1.150e-2854.72Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
UPI001AC8BC9B4.720e-2857.89Nonribosomal peptide synthetase DhbF n=1 Tax=Therm... [more]
A0A7S2HQ97_9STRA8.450e-2853.64Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2HQA0_9STRA8.610e-2853.64Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI00167AB38C8.780e-2856.12non-ribosomal peptide synthetase n=1 Tax=Streptomy... [more]
A0A5C2CWQ6_9BACT1.210e-2753.92AMP-dependent synthetase and ligase n=1 Tax=uncult... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12532contigE-fasciculatus_F_contig12532:2809..3615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue1.4e-56
Seed eggNOG ortholog2880.D8LBI2
GOsGO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009273,GO:0009987,GO:0042546,GO:0044085,GO:0044238,GO:0071554,GO:0071704,GO:0071766,GO:0071840,GO:1901576
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0318@1,KOG3628@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.2401562-CDS-E-fasciculatus_F_contig12532:2808..29341622927761.2401562-CDS-E-fasciculatus_F_contig12532:2808..2934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12532 2809..2934 +
1695995683.185335-CDS-E-fasciculatus_F_contig12532:2808..29341695995683.185335-CDS-E-fasciculatus_F_contig12532:2808..2934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12532 2809..2934 +
1622927761.2549117-CDS-E-fasciculatus_F_contig12532:3411..36151622927761.2549117-CDS-E-fasciculatus_F_contig12532:3411..3615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12532 3412..3615 +
1695995683.1972213-CDS-E-fasciculatus_F_contig12532:3411..36151695995683.1972213-CDS-E-fasciculatus_F_contig12532:3411..3615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12532 3412..3615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12532.1947.1prot_E-fasciculatus_F_contig12532.1947.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12532 2809..3615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12532.1947.1

>prot_E-fasciculatus_F_contig12532.1947.1 ID=prot_E-fasciculatus_F_contig12532.1947.1|Name=mRNA_E-fasciculatus_F_contig12532.1947.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
SALPEGNVGEIWVTSKSRAAGYWSEPEKTAEAFGGRLANDGDGPAPVAEG
SLGHVAPADGYLKTGDLGFLWEGELYICGRIKDLIIVRGRNHYPQDLERT
AEGAVAGSVR
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mRNA from alignment at E-fasciculatus_F_contig12532:2809..3615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12532.1947.1 ID=mRNA_E-fasciculatus_F_contig12532.1947.1|Name=mRNA_E-fasciculatus_F_contig12532.1947.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=807bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12532:2809..3615+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCGCTCTGCCTGAAGGAAACGTCGGCGAGATCTGGGTGACGAGCAAGTC CAGGGCTGCCGGGTACTGGTCTGAGCCGGAGAAGACTGCCGAGGCCTTCG GGGGTCGTCTCGCCAACGATGGAGACGTAAGAGGCCGCGTTATTGTGCAA TGTGTACAGCAGTGGGCGCTTGCCGCATTTAGCGGCGTTTTTTCCAGACT GCCACGTAGGTGGTATCATGACTGGTGTCTGTCGGCGTTTCGGTATTGTA GACGAAAGTTCCAGGTTTTCGTTTCTGTTCTTTTCGTGTGGGCACCTTCT TGTACCTAAAAGGTGTGTTCTCTTATGTTTTCCTTTCAATGCCAGCCCGT ACATGTGGTTGATGGTGGGCTGGTGCGCACTGTATGATGCCTTGGAAGGG GAAAGGGGTGGTTGTTTAATACGCCAGTGATCGCACGCAGGAATGTTCGC AAGAACGAATGCAGCAATGTTTTTTTACCATCGCATGGCATGGTTCACGA GGGAGTTTTGTAGCTGGGAACGATGGAAGCTCATAGCTCATAGCTCATAC CCCCGCTCCACTACTCCTTGTGCGACGATGACCTACCTCTCAACACGTGA AAGGGACCCGCGCCTGTAGCGGAAGGTTCCCTTGGGCATGTTGCCCCTGC CGACGGGTATCTCAAGACCGGCGACCTCGGCTTCCTATGGGAGGGCGAGC TGTACATCTGCGGGCGTATCAAGGACCTGATCATCGTTCGGGGGCGCAAT CACTACCCTCAGGACCTGGAGAGGACGGCCGAGGGGGCTGTGGCAGGGTC GGTGAGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12532:2809..3615+

>mRNA_E-fasciculatus_F_contig12532.1947.1 ID=mRNA_E-fasciculatus_F_contig12532.1947.1|Name=mRNA_E-fasciculatus_F_contig12532.1947.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12532:2809..3615+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCGCTCTGCCTGAAGGAAACGTCGGCGAGATCTGGGTGACGAGCAAGTC
CAGGGCTGCCGGGTACTGGTCTGAGCCGGAGAAGACTGCCGAGGCCTTCG
GGGGTCGTCTCGCCAACGATGGAGACTCCGCTCTGCCTGAAGGAAACGTC
GGCGAGATCTGGGTGACGAGCAAGTCCAGGGCTGCCGGGTACTGGTCTGA
GCCGGAGAAGACTGCCGAGGCCTTCGGGGGTCGTCTCGCCAACGATGGAG
ACGGACCCGCGCCTGTAGCGGAAGGTTCCCTTGGGCATGTTGCCCCTGCC
GACGGGTATCTCAAGACCGGCGACCTCGGCTTCCTATGGGAGGGCGAGCT
GTACATCTGCGGGCGTATCAAGGACCTGATCATCGTTCGGGGGCGCAATC
ACTACCCTCAGGACCTGGAGAGGACGGCCGAGGGGGCTGTGGCAGGGTCG
GTGAGAGGACCCGCGCCTGTAGCGGAAGGTTCCCTTGGGCATGTTGCCCC
TGCCGACGGGTATCTCAAGACCGGCGACCTCGGCTTCCTATGGGAGGGCG
AGCTGTACATCTGCGGGCGTATCAAGGACCTGATCATCGTTCGGGGGCGC
AATCACTACCCTCAGGACCTGGAGAGGACGGCCGAGGGGGCTGTGGCAGG
GTCGGTGAGA
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