mRNA_E-fasciculatus_F_contig12527.1943.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12527.1943.1
Unique NamemRNA_E-fasciculatus_F_contig12527.1943.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: D7FGT8_ECTSI (SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT8_ECTSI)

HSP 1 Score: 435 bits (1118), Expect = 8.560e-139
Identity = 247/263 (93.92%), Postives = 252/263 (95.82%), Query Frame = 1
Query:    1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEASFRQAREKLLEDLERRVKAAKAALASATAALKKEERLSQ 789
            RRVTIIPLNKITPN LRPNQL+RAASIAQ+MNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELG HQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKAL+EETKAVEDAKTAGAAAVQRQV      F GNA+LKAEEASFRQAREKLLE+LERRVK AKAALASAT ALKKEERLSQ
Sbjct:  571 RRVTIIPLNKITPNSLRPNQLNRAASIAQRMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGVHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALDEETKAVEDAKTAGAAAVQRQVWSTSVFFRGNAELKAEEASFRQAREKLLENLERRVKEAKAALASATTALKKEERLSQ 833          
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A6H5K638_9PHAE (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K638_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 1.610e-130
Identity = 235/263 (89.35%), Postives = 241/263 (91.63%), Query Frame = 1
Query:    1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEASFRQAREKLLEDLERRVKAAKAALASATAALKKEERLSQ 789
            RRVTIIPLNKITPNPLRPNQL+RAASIAQ+MNG+ASCAIELVGYD+ELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELG HQERLRVVSDKIGRLSAAS KFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAG AAV+R           NA+LKAEEASFRQAREKLLEDLERR       LASAT ALKKEERLSQ
Sbjct:  584 RRVTIIPLNKITPNPLRPNQLNRAASIAQRMNGSASCAIELVGYDEELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGVHQERLRVVSDKIGRLSAASTKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGDAAVRR-----------NAELKAEEASFRQAREKLLEDLERRXXXXXXXLASATTALKKEERLSQ 835          
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A836CJQ0_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ0_9STRA)

HSP 1 Score: 175 bits (443), Expect = 4.280e-46
Identity = 110/258 (42.64%), Postives = 160/258 (62.02%), Query Frame = 1
Query:    1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEASFRQAREKLLEDLERRVKAAKAALASATAALKKE 774
            RRVTI+PLN+I    L   ++ RAA++A++  G+A  AIELVGY D++  A  Y FG+++VCD+L+ A+ VAFDRGVRA+TVTLEGD+FEPQGTLTGGSK+QLG +L +L +L +A+ E G  +ER+R ++           + A LS  + + +++  +L  RLG+S+ +QLE +L +    ++E                 R           + QL+AEE+ +R+ RE  L  LE+ V AA+AA    TAALKKE
Sbjct:  579 RRVTIVPLNRIAHRTLEAQRVERAAAVARRCGGSAVPAIELVGYADDVAAAAEYAFGTTLVCDALETARAVAFDRGVRARTVTLEGDTFEPQGTLTGGSKAQLGTVLAKLHQLSAANTEAGRLEERVRALAAXXXXXXXXXXEHARLSQALALAEEKAGILGRRLGESTAAQLEARLADVGAQIKEXXXXXXXXXXXXXXXSAR-----------HEQLRAEESVYRERREAALAGLEKGVGAARAAAXXXTAALKKE 825          
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: W7TGS9_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGS9_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.090e-43
Identity = 103/247 (41.70%), Postives = 152/247 (61.54%), Query Frame = 1
Query:    1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEASFRQAREKLLEDLERRVKAAKAA 741
            RRVTIIPLNKI+ + +   +L +A  +A++  GTA  A+ELVGYD E+R AM +VFGS++VCD+L +AK + F++ +  +TVTL GDSF+P GTLTGGSK     ILG+L EL+ A+ EL   + R++ +   + +  +A K+  +L+  +E+++ EL LL +R+ QS H    TQ+E+  K L E   AV  AK     A  R           +  L+ +EA  R+ RE+ L+ LE  +K AK A
Sbjct:  573 RRVTIIPLNKISRHVVEAGRLKKATQLAERQGGTARLALELVGYDSEVRAAMEHVFGSTLVCDTLDVAKSLTFNKEIGRRTVTLAGDSFDPSGTLTGGSKPIGNSILGKLQELKGATAELSSLEARVKELESALAKQGSADKERGKLTAALEMKEYELRLLEERVSQSVHGMYATQVEKQEKELAESKAAVAAAKAKAVEAAAR-----------HKTLQQQEAGLRKKREEKLKGLENDLKKAKKA 808          
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A7S2S0T6_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S0T6_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.550e-40
Identity = 83/195 (42.56%), Postives = 133/195 (68.21%), Query Frame = 1
Query:    1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAK 585
            RRVTIIPL+K+    + P +++ A SIA+K  GTA+ A+ LVGY+DE++ AM +VFG+++VCDSL+ A+ V FD+ VR ++VTLEGDSF+PQGTL+GGS+   G +L +L + + A  ++   +E +  +   I  +  ASK++A+ S + E+ K ELSL+ +R   + ++QL +Q E   K+L++    +E A+
Sbjct:  579 RRVTIIPLDKVRARTIDPQRIAAANSIAEKKGGTANVALSLVGYEDEVKRAMEHVFGTTLVCDSLETARSVTFDKQVRLRSVTLEGDSFDPQGTLSGGSRPNRGAVLVQLGKYREAQLQVSKLEEEMASLKAGIASMEGASKEYAKCSEKYELAKHELSLVLERAKSTPYAQLVSQQERLEKSLQDLAAGIETAE 773          
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: UPI001CFBB933 (structural maintenance of chromosomes protein 2-1 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFBB933)

HSP 1 Score: 147 bits (372), Expect = 1.300e-36
Identity = 107/261 (41.00%), Postives = 148/261 (56.70%), Query Frame = 1
Query:    1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEA--SFRQAREKLLEDLERRVKAAKAALASATAALKKEE 777
            RRVTIIPLNKI  N +       AA +  K N  A  A+ LVGY DEL+ AM YVFGS+ VC S+  AKEVAF+  +R  +VTLEGD F+P G LTGGS+   G +L +L  L  A   L  HQ++L  +  KI  L    KKF +L +++E+R  +LSL   R  Q+ H +L   +++  + LEE          A AAA ++QV   L   C +     E++       RE +L+DLE+++KA K  + SA+  LK+ E
Sbjct:  569 RRVTIIPLNKIQANTVPSRVQQAAARLVGKEN--AELALSLVGYSDELKSAMEYVFGSTFVCKSIDSAKEVAFNHEIRTPSVTLEGDIFQPSGLLTGGSRKGGGDLLRQLHNLAEAESNLLIHQKKLSEIEAKIKELLPLQKKFMDLKSQLELRSYDLSLFEGRAEQNEHHKLGEMVKKIEQELEE----------AKAAAKEKQV---LYEKCVSTVSMLEKSIKEHDNNREGILKDLEKKIKAVKVQMQSASKDLKRHE 814          
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A314YIZ2_PRUYE (Structural maintenance of chromosomes protein 2-1 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314YIZ2_PRUYE)

HSP 1 Score: 147 bits (370), Expect = 1.500e-36
Identity = 105/261 (40.23%), Postives = 147/261 (56.32%), Query Frame = 1
Query:    1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEA--SFRQAREKLLEDLERRVKAAKAALASATAALKKEE 777
            RRVTIIPLNKI P  + P     A  +  K N  A  A+ LVGYD++LR AM +VFGS+ VC ++  AKEVAF+R +R  +VTLEGD F+P G LTGGS+   G +L +L EL    ++L  HQ RL  +  KI  L    KKF +L  + E++  +LSL   R  Q+ H +L   ++   + LEE          A +AA ++Q+   L   C N  L  E++      +RE  L+D E+++K  KA + SA+  LK  E
Sbjct:  109 RRVTIIPLNKIQPYTVHPRVQHAAVKLVGKEN--AELALSLVGYDEDLRSAMEFVFGSTFVCKTIDAAKEVAFNREIRTPSVTLEGDIFQPSGLLTGGSRKGGGDLLRQLHELAETEQKLSVHQRRLTEIEAKITELLPLQKKFMDLKAQFELKSYDLSLFQGRAEQNEHHKLGELVKRIEQELEE----------AQSAAKEKQL---LYEDCVNKVLVLEKSIKDNDNSREGRLKDFEKKIKETKAQMQSASKNLKGHE 354          
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A7S2H5Y5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H5Y5_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.910e-36
Identity = 82/201 (40.80%), Postives = 127/201 (63.18%), Query Frame = 1
Query:    1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAA 603
            RRVT +PLN+I+ N +  ++ ++A+ +A K  G    +I+LV +D+ELR AM Y FGS +VC+++ +A++VA    VR K VT+EGD  +P GT+TGGS   LGV+L R+ EL   +  LG H  R+  +S  I RL A + K ++L +EV+++ Q++ LLA+RL  S+ + L+ +  E    +EE T     A+  G AA
Sbjct:  239 RRVTFVPLNRISRNVVGSDKAAKASKVAGKA-GLVHRSIDLVSFDEELRPAMEYAFGSQLVCENMTVARKVANHDSVRTKCVTMEGDVVDPGGTMTGGSNKNLGVVLQRIGELTELTNALGSHDARIAAISKDIARLEAQADKHSKLVDEVDLQGQKVELLAERLSHSAFAALQQRENELASEVEEATTEASQAQKDGLAA 438          
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A6P3ZQY2_ZIZJJ (Structural maintenance of chromosomes protein n=3 Tax=Rhamnaceae TaxID=3608 RepID=A0A6P3ZQY2_ZIZJJ)

HSP 1 Score: 147 bits (370), Expect = 2.400e-36
Identity = 111/261 (42.53%), Postives = 149/261 (57.09%), Query Frame = 1
Query:    1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGN--AQLKAEEASFRQAREKLLEDLERRVKAAKAALASATAALKKEE 777
            RRVTIIPLNKI  NP+       A  +  K N  A  A+ LVGYD+EL+ A+ YVFGS+ VC ++  AKEVAF+R  R  +VT+EGD F+P G LTGGS+   GV+L +L +L  A  +L  HQ+RL  +  KI  L    KKF EL +++EI   +LSL   R  ++ H +L     E  K LE+E   + DAK+A   A ++Q    L   C N  A L+         RE  L++LE+++KA KA   SA   LK  E
Sbjct:  569 RRVTIIPLNKIQSNPVPDRVRHAAVRLVGKEN--AELALCLVGYDEELKRAIEYVFGSTFVCKTIDAAKEVAFNRETRTPSVTIEGDIFQPSGLLTGGSRRGGGVLLRQLHDLAEAELKLSAHQKRLNEIEQKIAELLPLEKKFKELKSQLEINSYDLSLFQGRAEENEHHKLA----EIVKKLEQE---LADAKSA---AKEKQF---LYEKCVNEVAVLEKSIKDHDNNREGRLKELEKKIKAVKAQTQSALRDLKGHE 814          
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A6P8D7L5_PUNGR (Structural maintenance of chromosomes protein n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8D7L5_PUNGR)

HSP 1 Score: 146 bits (369), Expect = 3.260e-36
Identity = 86/193 (44.56%), Postives = 118/193 (61.14%), Query Frame = 1
Query:    1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVED 579
            RRVTIIPLNKI  N + P     AA +  K N  A  AI LVGYD+EL+ AM YVFGS+ VC S+  AKEVAF   +R  +VTL+GD F+P G LTGGS+   G +L +L  L  A   L  HQ+RL  +  KI  L    KKF +L +++E++  +LSL  +R  Q+ H +L   +++  + L+E   AV++
Sbjct:  569 RRVTIIPLNKIQANTVPPRVQHAAAKVVGKEN--AEVAISLVGYDEELKSAMEYVFGSTFVCKSIDAAKEVAFSSEIRTPSVTLQGDIFQPSGLLTGGSRKGGGDLLRQLHNLAEAEANLAEHQKRLSAIEAKISELQPLQKKFLDLKSQLELKTYDLSLFQNRAEQNEHHKLVELVKKIEQELQEAQCAVKE 759          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGT8_ECTSI8.560e-13993.92SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1... [more]
A0A6H5K638_9PHAE1.610e-13089.35Structural maintenance of chromosomes protein n=1 ... [more]
A0A836CJQ0_9STRA4.280e-4642.64Structural maintenance of chromosomes protein n=1 ... [more]
W7TGS9_9STRA1.090e-4341.70Structural maintenance of chromosomes protein n=2 ... [more]
A0A7S2S0T6_9STRA2.550e-4042.56Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
UPI001CFBB9331.300e-3641.00structural maintenance of chromosomes protein 2-1 ... [more]
A0A314YIZ2_PRUYE1.500e-3640.23Structural maintenance of chromosomes protein 2-1 ... [more]
A0A7S2H5Y5_9STRA1.910e-3640.80Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6P3ZQY2_ZIZJJ2.400e-3642.53Structural maintenance of chromosomes protein n=3 ... [more]
A0A6P8D7L5_PUNGR3.260e-3644.56Structural maintenance of chromosomes protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12527contigE-fasciculatus_F_contig12527:40..3892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score442.2
Seed ortholog evalue1.7e-121
Seed eggNOG ortholog2880.D7FGT8
Preferred nameSMC2
KEGG koko:K06674
KEGG Pathwayko04111,map04111
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010032,GO:0010564,GO:0010605,GO:0010948,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032392,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034506,GO:0034641,GO:0035327,GO:0035639,GO:0036094,GO:0036292,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0045595,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1990837,GO:2000241,GO:2000242,GO:2000736
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0933@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categorymitochondrion
Exons6
Model size789
Cds size789
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12527.1943.1prot_E-fasciculatus_F_contig12527.1943.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12527 40..3892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927760.466027-CDS-E-fasciculatus_F_contig12527:39..1621622927760.466027-CDS-E-fasciculatus_F_contig12527:39..162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 40..162 +
1695995682.7917614-CDS-E-fasciculatus_F_contig12527:39..1621695995682.7917614-CDS-E-fasciculatus_F_contig12527:39..162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 40..162 +
1622927760.484833-CDS-E-fasciculatus_F_contig12527:496..5831622927760.484833-CDS-E-fasciculatus_F_contig12527:496..583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 497..583 +
1695995682.8061104-CDS-E-fasciculatus_F_contig12527:496..5831695995682.8061104-CDS-E-fasciculatus_F_contig12527:496..583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 497..583 +
1622927760.5267558-CDS-E-fasciculatus_F_contig12527:1243..14621622927760.5267558-CDS-E-fasciculatus_F_contig12527:1243..1462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 1244..1462 +
1695995682.8141131-CDS-E-fasciculatus_F_contig12527:1243..14621695995682.8141131-CDS-E-fasciculatus_F_contig12527:1243..1462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 1244..1462 +
1622927760.5474138-CDS-E-fasciculatus_F_contig12527:2677..28691622927760.5474138-CDS-E-fasciculatus_F_contig12527:2677..2869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 2678..2869 +
1695995682.8216443-CDS-E-fasciculatus_F_contig12527:2677..28691695995682.8216443-CDS-E-fasciculatus_F_contig12527:2677..2869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 2678..2869 +
1622927760.5609326-CDS-E-fasciculatus_F_contig12527:3131..31541622927760.5609326-CDS-E-fasciculatus_F_contig12527:3131..3154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 3132..3154 +
1695995682.8295057-CDS-E-fasciculatus_F_contig12527:3131..31541695995682.8295057-CDS-E-fasciculatus_F_contig12527:3131..3154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 3132..3154 +
1622927760.577097-CDS-E-fasciculatus_F_contig12527:3747..38921622927760.577097-CDS-E-fasciculatus_F_contig12527:3747..3892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 3748..3892 +
1695995682.8448303-CDS-E-fasciculatus_F_contig12527:3747..38921695995682.8448303-CDS-E-fasciculatus_F_contig12527:3747..3892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12527 3748..3892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12527.1943.1

>prot_E-fasciculatus_F_contig12527.1943.1 ID=prot_E-fasciculatus_F_contig12527.1943.1|Name=mRNA_E-fasciculatus_F_contig12527.1943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=263bp
RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRG
AMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSK
SQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNE
VEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAA
AVQRQVGGRLASFCGNAQLKAEEASFRQAREKLLEDLERRVKAAKAALAS
ATAALKKEERLSQ
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mRNA from alignment at E-fasciculatus_F_contig12527:40..3892+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12527.1943.1 ID=mRNA_E-fasciculatus_F_contig12527.1943.1|Name=mRNA_E-fasciculatus_F_contig12527.1943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3853bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12527:40..3892+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGAGGGTGACAATCATCCCCCTCAACAAGATCACCCCCAACCCCCTCCG GCCGAACCAGCTCAGCCGTGCCGCGTCCATCGCTCAGAAGATGAACGGCA CTGCCTCGTGCGCCATTGAGCTGGTGAGCGCGGGTTGCTGTTGTTGACCA GTTGTTGTTGTTGTTGTTGTTGCTGCTCCTGTTGCTGTTATAGTTGTTGA TGATGATGGTGATTTTGTGGTTGTTGTTGTTGGTGGTGTTGCTGATGATG GTGATTTTGTGGTTGTGGGATGCGCACGCCAGCACGCTACAAGCACTCCC AGTCCCCCCCCCCTCCCCTTTCTGGGCGCGTGGCGCATTGTCTGTTGCAC CTTAAGGGGGCCTACCGTGCACCCCAAACTGTTCTTGACATCACCCTTAC CCTCATCCGTCCGCGGCGTTGCATCCCGTGGTACTCGATGGATGTTTTTT TTATCAGGTGGGCTACGACGACGAGCTCCGCGGCGCCATGTCCTACGTGT TCGGATCCAGCATAGTGTGCGACTCCCTTCAGATTGCCAAGGAGGTGTGT AAATATGAAACATGTGTGTTGGTGATCTCCGAAAACGAGCGATCTCCGAA AGCACAGATTGCCAAGGAGGTGTGTAAATATAAAACATGTGTGTTGGTAT CTCCGAAAGCACTCTCCGAAAGTGGTCTCCAAAAGTGATCTCTCCCAAGC GATCTCGAAAACTGATGTCCGAAACTGATATCCTAAAGCTATCTATCTCC GAACCGACTTCCGAACCAATGCCTTTGGTCCCGGAGATGTGTGTTTCACG CGAGTACCACTAACTGTAGCTGTCGTCGTCCAAGATCCTGCCGTTGTTGT TTCACGGCTGTTCTTGTTGTTGTTGTTGATATTGGTCGAGCTAACAAGTG CTGTACTATCTGTTGTCGTGGTAGATAGTCTTCATCTTGACTTCACCATC GCAGCCTTCGCTCAACACCTCCTGATTCGGACCCTAACCCTAACCCTAAC CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAGATTCGGAC CCTGATACCGCCGCCCTTGCTCCGCAACGTCCTCTCGAGGACGCATGGTC AATGATCTAACGACTAAGGCGAGGACGCGTGGTCAATGATCTAACGACTA GGGCATGCAAAGCATAAGAGTTCGCCCCCCCCCTTGCTCCGCAACAACGA CCAGGTGGCGTTCGACAGGGGAGTCCGCGCGAAGACAGTTACCCTCGAGG GCGACTCCTTCGAGCCACAAGGCACGCTCACCGGGGGTTCCAAGTCCCAG CTAGGCGTTATCCTAGGGCGTTTGGCGGAGCTGCAGTCGGCATCCCGCGA GCTGGGGGGTCACCAGGAGAGGCTCCGCGTTGTGTCGGACAAGATCGGAA GGCTCTCGGCCGCTTCCAAGAAGGTTAGGTTTAGTTTCCAAGAAGGTTAG GGTTAGTCTATGTGGCGGAATGATGTTCGCAGGAAAATCGCGCTTGCACG TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGAAGATCGGAAAGCTCTTGGC CGCTTTCAAGAAGGTTGGGGTTAGCGGAATGTGTGTAGAAAACTCGCGCT TGCACGTCGTTGTTGTGCTTGTTGCTGTTGATGTTGTTGTTGTTGTGGTG GTTGCCTTCACATCGAAAACCGTTCAGTCTCTCTACCCAGTACCTTCATC TGTCGGTACTGATCCAACACTTGACGCGGTCGATTGTCGTGGTCACAGGC TAACCTACCCTAAAAAAGGCTACTCAGATACGTGACCTTTTGAAGTGCGG TCCTTCGAACACAAAGATGGTAATGCAGCAGCGACGACAGTAACGGATGC GTGTGCGTGTCTTGGATGTTTTTCTTGGGTTTGCGGAGCTGAGCAATGAA AAGTCGCAGGCCTCACGACGGCTGGAAACAGAAGATGCTTCTTGAAGCCA TGATCTGGGAGCCCATGGTTTGTCTCGTGTAATGTATGTGTGCGTGCCAT ACGTGTGTCTCTTCAGTTTGCCTAGCTGAGCAATGAAAATGCGTCAGTCT GAGTACGGCTGGAAACAGAACATGCTTCAAACGCTATGATCTGGGACCCC GAAATGTGTCGTGTGTGTCCTGCGTCGTGTGTCCTGCGTCTGTTCGTGTC TACTCAGTTTGCCGCGCTGACCAATGACAATAAGTCAGTCTGAGTACGGC TGGAAACATAACGTGCTTCTGAAGGCCATGATCTGGGGCCCCGTATTGTG TGTTGTGTCCTTTCGTGTGGTCGTGTTTACTCATTTTGCCGAGTTTACTA ATCAACTACCGTACATTTTCATATTATCGGCTCGAAAACCCGTCTGTCTC AGCGTCCTTCTCAGTGCGGCTGAAACACAACGCAACTGGTATCACTGATA TAAATCATCAGTGTATAGGCTTGAACAAACTCGAAATAAGTCAAGTACCC AGCTGGTTTTCCTCTACTCACTGCTGTAAAGACTTCAACACATCCCCTTC GATTGTAGTTCTACCTCGAACGGGTAGTCTTTCTGTGTGTATATTTGTTT TTCCTAATGCTTCTAAAGGGTCGTTTGATCTGAGACTCCCCGTCATGTGT GTGTGTGTGTCGCGTCTTGTGTGTGTCCGTCTCCTCAGTTCGCCGAGCTG AGCAACGAGGTCGAGATACGCAAGCAGGAGCTGAGCCTCCTCGCCGACCG CCTGGGGCAGTCTTCCCACAGCCAGCTCGAGACCCAGCTGGAGGAGACTC GCAAGGCTCTGGAGGAGGAGACGAAGGCGGTGGAGGACGCCAAGACTGCC GGGGCCGCGGCTGTACAGAGGCAAGTCGGGGTCAACTTGCGTCTATTTGC GGGTTTCTTGCGGATTTGTTTGATATTTTGTTGTTGTTGATGGTTGTCGG CATGCGGTATTCGTGGGTAATCTCGGATTTGAGACGAGTCCAGATTTCGG AACGAAATCTGGAAGAGTCAGATATCCCATGAAATATGTTGGGAAATGAC CCTACCTCGCTCACTCCGCTTTCTCTCTCCCGAAATACGCCGGAGCTATC GAGGAGAGAAAATAAATAGTTGAGTACAGAAAATTACCATAGGGTCGACT TGCGTCCTTTTGCGGGTTTTCTTGCGTTTTTTTTTTGGCGTTGATGGTGA TGACTAGGAGCGTGCGCAAGGTCCCGCGCCAAGCCCTGTAGCAGGGGCAT GGGGATGCCCGTGTCAACCTACCCCACTTTTGCACCCAGAACATCCCCTC GTTGAAACTCCGGCGAACGTCCTCACAGCGCACGACTGCATTGGCTGCTA GTACACATGCCCTGACACTGTTCCCGGGGATGCTGCATCCGCAGGTCCAC CCACGAACCTTGGCCATCAAACCCATTTCTCCCTCCCCCTGCCTGTTTTT CCTTTTTGCCGTTGCTTTGGTTTGACAGAGCGTGTTTGGCTGCGTATGGA GTTTTCCCCCCGGAGAGGGGTTCGTTTTTTTTCTGAAACCAACCCCCCCT GGCGCTTATTTGAAAGTTTCGAACCGGGATGTGTGCTACATTGTAGTTGG TACTTTTTTTTGCGTTCAGAAAACGCCCAGCTGGAGGTGGAGCAAGAGGC GCCCTTCCGCCGGGCCAGGGAGAAGACGTGTACCTTTTTCTGGACCGAAT CGAGCCATTCAAATCTCACACGTGGTGTGCGTTGTATTGTACCCTTTTTT GCACACAGAAACGCCCAGCTGAAGGCGGAGGAGGCATCCTTCCGCCAGGC CAGGGAGAAGCTCCTCGAGGACCTAGAGCGTCGCGTCAAGGCGGCCAAGG CAGCCCTTGCGTCCGCCACAGCGGCTCTCAAGAAGGAGGAGCGGCTATCC CAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12527:40..3892+

>mRNA_E-fasciculatus_F_contig12527.1943.1 ID=mRNA_E-fasciculatus_F_contig12527.1943.1|Name=mRNA_E-fasciculatus_F_contig12527.1943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1578bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12527:40..3892+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGAGGGTGACAATCATCCCCCTCAACAAGATCACCCCCAACCCCCTCCG
GCCGAACCAGCTCAGCCGTGCCGCGTCCATCGCTCAGAAGATGAACGGCA
CTGCCTCGTGCGCCATTGAGCTGAGGAGGGTGACAATCATCCCCCTCAAC
AAGATCACCCCCAACCCCCTCCGGCCGAACCAGCTCAGCCGTGCCGCGTC
CATCGCTCAGAAGATGAACGGCACTGCCTCGTGCGCCATTGAGCTGGTGG
GCTACGACGACGAGCTCCGCGGCGCCATGTCCTACGTGTTCGGATCCAGC
ATAGTGTGCGACTCCCTTCAGATTGCCAAGGAGGTGGGCTACGACGACGA
GCTCCGCGGCGCCATGTCCTACGTGTTCGGATCCAGCATAGTGTGCGACT
CCCTTCAGATTGCCAAGGAGGTGGCGTTCGACAGGGGAGTCCGCGCGAAG
ACAGTTACCCTCGAGGGCGACTCCTTCGAGCCACAAGGCACGCTCACCGG
GGGTTCCAAGTCCCAGCTAGGCGTTATCCTAGGGCGTTTGGCGGAGCTGC
AGTCGGCATCCCGCGAGCTGGGGGGTCACCAGGAGAGGCTCCGCGTTGTG
TCGGACAAGATCGGAAGGCTCTCGGCCGCTTCCAAGAAGGTGGCGTTCGA
CAGGGGAGTCCGCGCGAAGACAGTTACCCTCGAGGGCGACTCCTTCGAGC
CACAAGGCACGCTCACCGGGGGTTCCAAGTCCCAGCTAGGCGTTATCCTA
GGGCGTTTGGCGGAGCTGCAGTCGGCATCCCGCGAGCTGGGGGGTCACCA
GGAGAGGCTCCGCGTTGTGTCGGACAAGATCGGAAGGCTCTCGGCCGCTT
CCAAGAAGTTCGCCGAGCTGAGCAACGAGGTCGAGATACGCAAGCAGGAG
CTGAGCCTCCTCGCCGACCGCCTGGGGCAGTCTTCCCACAGCCAGCTCGA
GACCCAGCTGGAGGAGACTCGCAAGGCTCTGGAGGAGGAGACGAAGGCGG
TGGAGGACGCCAAGACTGCCGGGGCCGCGGCTGTACAGAGGCAAGTCGGG
TTCGCCGAGCTGAGCAACGAGGTCGAGATACGCAAGCAGGAGCTGAGCCT
CCTCGCCGACCGCCTGGGGCAGTCTTCCCACAGCCAGCTCGAGACCCAGC
TGGAGGAGACTCGCAAGGCTCTGGAGGAGGAGACGAAGGCGGTGGAGGAC
GCCAAGACTGCCGGGGCCGCGGCTGTACAGAGGCAAGTCGGGGGTCGACT
TGCGTCCTTTTGCGGGGTCGACTTGCGTCCTTTTGCGGAAACGCCCAGCT
GAAGGCGGAGGAGGCATCCTTCCGCCAGGCCAGGGAGAAGCTCCTCGAGG
ACCTAGAGCGTCGCGTCAAGGCGGCCAAGGCAGCCCTTGCGTCCGCCACA
GCGGCTCTCAAGAAGGAGGAGCGGCTATCCCAGAAACGCCCAGCTGAAGG
CGGAGGAGGCATCCTTCCGCCAGGCCAGGGAGAAGCTCCTCGAGGACCTA
GAGCGTCGCGTCAAGGCGGCCAAGGCAGCCCTTGCGTCCGCCACAGCGGC
TCTCAAGAAGGAGGAGCGGCTATCCCAG
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