mRNA_E-fasciculatus_F_contig12503.1927.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12503.1927.1
Unique NamemRNA_E-fasciculatus_F_contig12503.1927.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12503.1927.1 vs. uniprot
Match: D7FWZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWZ5_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 5.420e-67
Identity = 113/126 (89.68%), Postives = 115/126 (91.27%), Query Frame = 2 
Query:  449 MGVWYTFHLGVLVAAAAA-VASPAEAFVTSFGGGGSKMLRVGQRHQPSLGGTGSCSSRQRRFVLGMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKK 823
            MGVWY F  GVLVAAAAA VASPAEAF+TSFGGGGSKMLRVGQRHQPS   +GSCS RQRR  L MKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKK
Sbjct:    1 MGVWYAFRSGVLVAAAAAAVASPAEAFITSFGGGGSKMLRVGQRHQPSFKSSGSCS-RQRRADLDMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKK 125
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12503.1927.1 vs. uniprot
Match: A0A7R9UCL3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.260e-18
Identity = 56/113 (49.56%), Postives = 66/113 (58.41%), Query Frame = 2 
Query:  479 VLVAAAAAVASPAEAFVTSFGGGGSKMLRVGQRHQPSLGGTGSCSSRQRRFVLGMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDP 817
            VL+AA AA+++PA AF                   P +      SSR  RF L M YVPDG+SPEQWKKMQ +E  K K   +LG  G+  F+SRSLQAWQE GA HLFP DP
Sbjct:   34 VLLAAVAALSAPAHAFAP-----------------PGM----LTSSRGTRFQLSMGYVPDGMSPEQWKKMQAKEKSKSKGK-NLGATGITKFQSRSLQAWQEAGAKHLFPTDP 124
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12503.1927.1 vs. uniprot
Match: D7G4S4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S4_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 9.270e-16
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:  632 VLGMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKK 823
             L M Y+PDGLSP +WKK++  +   KKK  +LG++G   FKSRS QAWQE GAGHLFPVDPKK
Sbjct:   40 ALKMVYIPDGLSPAEWKKIKDAD---KKKQENLGKLGPSRFKSRSFQAWQESGAGHLFPVDPKK 100
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12503.1927.1 vs. uniprot
Match: A0A7S2US33_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US33_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.030e-14
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 2 
Query:  635 LGMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKK 823
            L M YVP+GL+PEQWKK+Q    EK K  G+LG++G K FKSRS  AWQ  G  HLFPVDPKK
Sbjct:   38 LRMGYVPEGLTPEQWKKIQ----EKDKAKGNLGEMGPKRFKSRSFAAWQAAGGKHLFPVDPKK 96
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12503.1927.1 vs. uniprot
Match: A0A836CGF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.370e-13
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 2 
Query:  614 SRQRRFVLGMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQE----DGAGHLFPVDPKK 823
            +R     L M Y+PDGL+PEQWK ++++E EK  K  +LG+VG  SFKSRS QAWQE       GHLFPVDP K
Sbjct:   31 ARPATSSLSMAYIPDGLTPEQWKVIKEKEQEKASK--NLGRVGATSFKSRSFQAWQEAMERGEGGHLFPVDPVK 102
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12503.1927.1 vs. uniprot
Match: A0A1Z5KB69_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB69_FISSO)

HSP 1 Score: 62.4 bits (150), Expect = 5.460e-8
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:  599 TGSCSSRQRRFVLGMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQE----DGAGHLFPV 811
            TGS SS++    +   YVPDG +PE +KK  KEE  KK +  +LG+VG K FKSRS Q++QE      A HL PV
Sbjct:   22 TGSLSSQRPSLTVVNGYVPDGFTPESYKKF-KEEERKKNEKKNLGRVGPKGFKSRSFQSFQEALERGEATHLLPV 95
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12503.1927.1 vs. uniprot
Match: B7FS70_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FS70_PHATC)

HSP 1 Score: 60.1 bits (144), Expect = 2.080e-7
Identity = 34/68 (50.00%), Postives = 49/68 (72.06%), Query Frame = 2 
Query:  635 LGMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQE----DGAGHLF-PVDPKK 823
            L M YVPDGL+ +Q++K++ ++A +K K  +LG++G K FKSRSLQ+WQE      AGH F P+D K+
Sbjct:   33 LEMGYVPDGLTEDQYRKIKMDDA-RKAKGKELGRLGPKGFKSRSLQSWQEAFDHGKAGHTFAPIDYKE 99
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12503.1927.1 vs. uniprot
Match: A0A8J2SFN1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFN1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.400e-6
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 2 
Query:  647 YVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAW---QEDG-AGHLFPVDPKK 823
            YVP G+SPE++ K++K EA+ KKK  + G  G + F+SRS+ ++   QE G A HLFPVDP+K
Sbjct:   32 YVPSGMSPEEYAKLKKREADAKKKK-NFGAGGARGFESRSMASFMRAQERGEAEHLFPVDPEK 93
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12503.1927.1 vs. uniprot
Match: B7GDH0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GDH0_PHATC)

HSP 1 Score: 55.1 bits (131), Expect = 1.170e-5
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 2 
Query:  617 RQRRFVLG--MKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQED----GAGHLFPV 811
            R + F+    M YVPDG+SPE+++K++++E +K K     G  G ++FKSRS+QA+Q+D      GHL PV
Sbjct:   21 RTQSFISSKNMGYVPDGMSPEEYRKLRQKEQDKVKNKR-FGAFGPQTFKSRSMQAFQKDLEEGKGGHLMPV 90
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12503.1927.1 vs. uniprot
Match: A0A6U3BRN0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3BRN0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.540e-5
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  647 YVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQE----DGAGHLFPV 811
            YVPDG +PE +KK ++ EA+K +K  +LG++G K FKSRS Q++QE      A HL PV
Sbjct:   37 YVPDGFTPESYKKFKEAEAKKLQKQ-NLGKLGPKGFKSRSFQSFQEALERGEADHLMPV 94
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12503.1927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FWZ5_ECTSI5.420e-6789.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9UCL3_9STRA1.260e-1849.56Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
D7G4S4_ECTSI9.270e-1662.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2US33_9STRA1.030e-1463.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CGF0_9STRA2.370e-1355.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5KB69_FISSO5.460e-849.33Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7FS70_PHATC2.080e-750.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A8J2SFN1_9STRA4.400e-650.79Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
B7GDH0_PHATC1.170e-543.66Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6U3BRN0_9STRA3.540e-550.85Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12503contigE-fasciculatus_F_contig12503:403..2140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue5.5e-54
Seed eggNOG ortholog2880.D7FWZ5
EggNOG OGs2D1KJ@1,2S4WB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_001160.1
Exons2
Model size825
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12503.1927.1prot_E-fasciculatus_F_contig12503.1927.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12503 403..1692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.9433646-CDS-E-fasciculatus_F_contig12503:402..4891622927756.9433646-CDS-E-fasciculatus_F_contig12503:402..489Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12503 403..489 -
1695995681.8332505-CDS-E-fasciculatus_F_contig12503:402..4891695995681.8332505-CDS-E-fasciculatus_F_contig12503:402..489Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12503 403..489 -
1622927756.9608688-CDS-E-fasciculatus_F_contig12503:1404..16921622927756.9608688-CDS-E-fasciculatus_F_contig12503:1404..1692Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12503 1405..1692 -
1695995681.8445368-CDS-E-fasciculatus_F_contig12503:1404..16921695995681.8445368-CDS-E-fasciculatus_F_contig12503:1404..1692Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12503 1405..1692 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.9746914-UTR-E-fasciculatus_F_contig12503:1692..21401622927756.9746914-UTR-E-fasciculatus_F_contig12503:1692..2140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12503 1693..2140 -
1695995681.8614357-UTR-E-fasciculatus_F_contig12503:1692..21401695995681.8614357-UTR-E-fasciculatus_F_contig12503:1692..2140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12503 1693..2140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12503.1927.1

>prot_E-fasciculatus_F_contig12503.1927.1 ID=prot_E-fasciculatus_F_contig12503.1927.1|Name=mRNA_E-fasciculatus_F_contig12503.1927.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=125bp
MGVWYTFHLGVLVAAAAAVASPAEAFVTSFGGGGSKMLRVGQRHQPSLGG
TGSCSSRQRRFVLGMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVK
SFKSRSLQAWQEDGAGHLFPVDPKK
back to top

mRNA from alignment at E-fasciculatus_F_contig12503:403..2140-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12503.1927.1 ID=mRNA_E-fasciculatus_F_contig12503.1927.1|Name=mRNA_E-fasciculatus_F_contig12503.1927.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12503:403..2140- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCCGCACAACTCCAGACTTCAACAACAGATGCTCCTACTGCTGCATCTT
GAAACCGCCAAGAAGCGTGCTGCTGCCGCTCTCGCTGGCACCACCATTCA
TAATCCCGCTGCAAGCCTCCTGTCTAACGACCAAGAACACAACATTGATT
CTACAGGATAGTGCAGATCGCGGTTGGTGCAGCGTGGTGAAGAAGAGAGA
GCTCCATCCAGCAGTTTCGTTGTGTGAGCATCTGGTGGGATAGCGGAAGG
AATAGAGCCAGCTGCTGCTAAATCGAACAGCCACCGCGCACATACACATA
ACGCCGCCCCCCCCCCGACAGCAATACTCCTCATCACACGACGCGCTGCC
AGGACCGGCTGGGAAGAACAACGCCCCTCTTCGTCCTGCGTTGAAACACC
AAACACTTGATATATTCATCGAGAGGTGGGTGAGGGGCGGCAACAACGAT
GGGTGTCTGGTACACCTTCCACCTAGGGGTGCTGGTGGCAGCGGCTGCTG
CTGTTGCTTCTCCTGCCGAAGCCTTCGTTACTTCGTTCGGAGGAGGAGGC
TCGAAGATGCTGCGTGTCGGGCAGCGACACCAGCCTTCGTTGGGAGGCAC
TGGAAGCTGCTCCAGCAGGCAGCGTCGCTTCGTTCTCGGCATGAAGTACG
TGCCTGACGGGCTTTCCCCGGAGCAGTGGAAGAAGATGCAGAAGGAGGAG
GCTGAGAAGAAGAAAAAGATGGGCGACCTTGGGCAGGTACAGTAGGTACA
AGGAGTCGAGAGAGGGTGAACCCTTGTGCTATGCTATGGTCTTTAGTCCT
CCGCAATTCTTGATCCATACCCTTTCACCATGATGACGGGCACCAACAAA
CCGAATACCTTTCGCAGTCTGTGTTCTCTACAAGAAGAGTAGCATCGACT
ACAACACCAACAAAGAATTGCAGTCGGGATACATACATTTTCGGCGGACC
TGACTCAGAAAGTATTATTTGCTCCGTGAACAGCACGTACTACTCTCGTT
TTTTCTGCTGGCGGCACCGCAGGTGGGAGTACAGAGCTTCAAAGAACATG
GTCGCGCACCCTTGCCCGTTTTGAGTTTATTACACAGTATGCAGACGGCA
CACCTACTACCTATAAATTGCCAAAAACATATCTATTTCTGCCTTTCCTC
GTGCTTGGTCTTTTTCCCTCGTTGGGAGGGCGAAATTACATGTAGTCGGA
GTCGAGGGCTTCAAAGCACCGGCGACACCAGCGCACGCCGCATACCGAGA
GAAGTTTACTCACCATTAGCCAGAGCACTTTACCGACAACTAGCCATTTG
ATGTTAACACACTTTGCATGGCACCTAGAAGTAGGGATGCCAGTACTCTA
TGCCGGTACCCCGAGTTTGCTCTGTCACCTGTTCGTCGTTGGTATTTTCC
TTGGCGGTATCCTACCTTGTTGCTGGTACGGCTTTTTGGTCTCACACTAC
TCCTCATCGCCATTTCCGAGTATATCCTGGTATGTGTGACTGCCCACCCT
GACGTTTTTCGTTCATGAACACCGTGGAGTTGGTCTTTCGCCAAGGTAAT
TGCCTCAAAATGCCTGGTGTGCAAGCTTATCTTGTTCAGGCAGGTGTGGT
CAAACCAATGGATGGTCATGTCCGCATCTCTTTTGGTGCCTGCCGCGCCA
GGTGGGGGTGAAGAGCTTCAAGAGCAGGAGCCTCCAGGCGTGGCAGGAGG
ACGGGGCCGGCCACCTCTTCCCCGTAGATCCCAAGAAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12503:403..2140-

>mRNA_E-fasciculatus_F_contig12503.1927.1 ID=mRNA_E-fasciculatus_F_contig12503.1927.1|Name=mRNA_E-fasciculatus_F_contig12503.1927.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=750bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12503:403..2140- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTGTCTGGTACACCTTCCACCTAGGGGTGCTGGTGGCAGCGGCTGC
TGCTGTTGCTTCTCCTGCCGAAGCCTTCGTTACTTCGTTCGGAGGAGGAG
GCTCGAAGATGCTGCGTGTCGGGCAGCGACACCAGCCTTCGTTGGGAGGC
ACTGGAAGCTGCTCCAGCAGGCAGCGTCGCTTCGTTCTCGGCATGAAGTA
CGTGCCTGACGGGCTTTCCCCGGAGCAGTGGAAGAAGATGCAGAAGGAGG
AGGCTGAGAAGAAGAAAAAGATGGGCGACCTTGGGCAGATGGGTGTCTGG
TACACCTTCCACCTAGGGGTGCTGGTGGCAGCGGCTGCTGCTGTTGCTTC
TCCTGCCGAAGCCTTCGTTACTTCGTTCGGAGGAGGAGGCTCGAAGATGC
TGCGTGTCGGGCAGCGACACCAGCCTTCGTTGGGAGGCACTGGAAGCTGC
TCCAGCAGGCAGCGTCGCTTCGTTCTCGGCATGAAGTACGTGCCTGACGG
GCTTTCCCCGGAGCAGTGGAAGAAGATGCAGAAGGAGGAGGCTGAGAAGA
AGAAAAAGATGGGCGACCTTGGGCAGGTGGGGGTGAAGAGCTTCAAGAGC
AGGAGCCTCCAGGCGTGGCAGGAGGACGGGGCCGGCCACCTCTTCCCCGT
AGATCCCAAGAAGGTGGGGGTGAAGAGCTTCAAGAGCAGGAGCCTCCAGG
CGTGGCAGGAGGACGGGGCCGGCCACCTCTTCCCCGTAGATCCCAAGAAG
back to top