mRNA_E-fasciculatus_F_contig1250.1923.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig1250.1923.1
Unique Name	mRNA_E-fasciculatus_F_contig1250.1923.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot
Match: D7FXR2_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR2_ECTSI)

HSP 1 Score: 366 bits (939), Expect = 1.870e-119
Identity = 222/441 (50.34%), Postives = 261/441 (59.18%), Query Frame = 1

Query:   82 IKEFVA-LDHLSYGTLKCCWWTLGSVWKTMLCIWTALEVREYVQQRRPSTTCHRAHTYVGRHARCPIAWNSITRGFHGYCDFTWAVSTIEVQLEFLEEVDFLRERAQMETTRAPLFSLPSPLQISDDRDDHLSKIGMILSTSVLSGESRCQ------RHTRSERTPNLAPCTCLVNERL--CAYRKTPSLFAVYNTGIQ---------------VLPVGSSKITLRMVDYNRGEYKALCAKFNARWIKPRPANGVSVVRIFSIKVSRWMRFKHALYTFIFGNMCQRFHGTSCNEGCNFMLGPQGGEAVPCGKSSCSVCNICKLGFKLGTNVARTARATLFPLRYGAGIYLTSVSGKANDYAGRSAKKLGNGSELRCMFVASVALGNPFKTKRTGLPPDECPPSGYQSVVGEVGQGLNYDEFVVYREEAVLPTHLIVYALRH 1332
            +K FVA LDHLSYGTLKCCWW+LG+VWKT   I    E RE+    R      R H  +GR       W   T+ +  Y D    V   E       E+ + +++                               ++    +     R +      R   ++   +L  C  +V   L  C  +K+   +    T  +               VL VG S   L+ ++ N  E KALC  FNARWIKPRP NGVS+VRIFSI+VSR +R KH  Y   FGN+CQRFHGTSCNEGCNFM+ PQGG+A PCG+SSCSVCNICKLGF+LG NVARTARAT FPLRYGAGIYLTSVSGKANDYA RSAKK+G   ELRCMFVASVALGN FKT    LP D+CPP GY SVVGE GQ LN+DEFVVY+EEA LPTHLIVYALRH
Sbjct:    1 MKAFVAILDHLSYGTLKCCWWSLGNVWKT---ITRVKEAREHKSLGRWKLAKAREHMRLGRR------WYFATKQYKAYRDQV-GVFNPEWHFTVARELKYCQQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLQKGRIHRKRGRWELAITLFRLYLNDEGADLDTCI-IVRAELHDCQQKKSEEDWRENATEDERKKNVEHEQRRTSRGVLSVGFSGSFLQRLEGNGAECKALCDLFNARWIKPRPENGVSIVRIFSIQVSREVREKHERYKGKFGNLCQRFHGTSCNEGCNFMVDPQGGQA-PCGESSCSVCNICKLGFQLGPNVARTARATRFPLRYGAGIYLTSVSGKANDYASRSAKKVGE-LELRCMFVASVALGNTFKTTSARLPADQCPPPGYHSVVGEAGQRLNFDEFVVYKEEAALPTHLIVYALRH 428

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BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot
Match: A0A6H5JBF5_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBF5_9PHAE)

HSP 1 Score: 352 bits (903), Expect = 6.570e-117
Identity = 175/228 (76.75%), Postives = 193/228 (84.65%), Query Frame = 1

Query:  649 QVLPVGSSKITLRMVDYNRGEYKALCAKFNARWIKPRPANGVSVVRIFSIKVSRWMRFKHALYTFIFGNMCQRFHGTSCNEGCNFMLGPQGGEAVPCGKSSCSVCNICKLGFKLGTNVARTARATLFPLRYGAGIYLTSVSGKANDYAGRSAKKLGNGSELRCMFVASVALGNPFKTKRTGLPPDECPPSGYQSVVGEVGQGLNYDEFVVYREEAVLPTHLIVYALRH 1332
            QVLPVGSS+  L+M++ N  EY AL   FNARW+KPRPA GVS+ R++SI+VSR MR KH  Y  +FGN+CQRFHGTSCNEGCNFM+ PQGG+A PCGKSSCSVCNICKLGFKLG NVA TARAT  PLRYG GIYLTSVSGKANDYA RSAKK+G  SELRCMFVASVA+G  FKTK T LP ++CPP GYQSVVGEVGQGLN+DEFVVY EEA LPTHLIVYALRH
Sbjct:    6 QVLPVGSSESVLQMLEENSREYTALRGLFNARWMKPRPAKGVSIERVYSIQVSREMREKHERYKGMFGNLCQRFHGTSCNEGCNFMVDPQGGQA-PCGKSSCSVCNICKLGFKLGANVAGTARATGVPLRYGEGIYLTSVSGKANDYASRSAKKIGIASELRCMFVASVAVGRAFKTKSTRLPANQCPPPGYQSVVGEVGQGLNFDEFVVYNEEAALPTHLIVYALRH 232

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BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot
Match: D8LKU9_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU9_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 1.100e-92
Identity = 154/230 (66.96%), Postives = 175/230 (76.09%), Query Frame = 1

Query:  643 GIQVLPVGSSKITLRMVDYNRGEYKALCAKFNARWIKPRPANGVSVVRIFSIKVSRWMRFKHALYTFIFGNMCQRFHGTSCNEGCNFMLGPQGGEAVPCGKSSCSVCNICKLGFKLGTNVARTARATLFPLRYGAGIYLTSVSGKANDYAGRSAKKLGNGSELRCMFVASVALGNPFKTKRTGLPPDECPPSGYQSVVGEVGQGLNYDEFVVYREEAVLPTHLIVYALRH 1332
            G   +PVGSS  TLRM+D +  +Y+ LC  F+ RW+KP+PA GVSVVRIFSI+  R           +  N+ QRFHGTSCN GCNFM+ PQG  A PCG SSCSVCNIC LGF LG NVARTARAT FPLRYG G+YL+SVSGKANDYAGRSAK   +G+ELRCMFVA+VA+G  F TK + LP   CPP GYQSVVGEVGQ LN+DE VVY+E AVLPTHLIVYALRH
Sbjct:  321 GRNEVPVGSSSSTLRMLDNSDWQYENLCDMFHTRWLKPQPARGVSVVRIFSIQYKRN----------VVVNLRQRFHGTSCNAGCNFMIDPQGATA-PCGLSSCSVCNICMLGFNLGKNVARTARATRFPLRYGPGVYLSSVSGKANDYAGRSAKTGSDGTELRCMFVANVAVGKAFNTKSSNLPQSACPPLGYQSVVGEVGQALNFDEVVVYKEAAVLPTHLIVYALRH 539

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BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot
Match: D7FXR1_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR1_ECTSI)

HSP 1 Score: 289 bits (740), Expect = 2.460e-92
Identity = 143/186 (76.88%), Postives = 158/186 (84.95%), Query Frame = 1

Query:  775 SVVRIFSIKVSRWMRFKHALYTFIFGNMCQRFHGTSCNEGCNFMLGPQGGEAVPCGKSSCSVCNICKLGFKLGTNVARTARATLFPLRYGAGIYLTSVSGKANDYAGRSAKKLGNGSELRCMFVASVALGNPFKTKRTGLPPDECPPSGYQSVVGEVGQGLNYDEFVVYREEAVLPTHLIVYALRH 1332
            S +   S +VSR +R +H  Y   FGN+CQRFHGTSCNEGCNFM+ PQGG+A PCGKSSCSVCNICKLGFKLG NVA TARAT FPLRYG G+YLTSVSGKANDYA RSAKK+GN SELRCMFVA+VA+G  FKTK T LP ++CPP GYQSVVGEVG+GLN+DEFVVY EEA LPTHLIVYALRH
Sbjct:   47 STLEKHSEEVSREVREEHERYKGKFGNLCQRFHGTSCNEGCNFMVDPQGGQA-PCGKSSCSVCNICKLGFKLGANVAGTARATGFPLRYGEGVYLTSVSGKANDYASRSAKKIGNDSELRCMFVANVAVGRTFKTKSTSLPANQCPPPGYQSVVGEVGRGLNFDEFVVYDEEAALPTHLIVYALRH 231

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BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot
Match: D8LKU5_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU5_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 4.060e-90
Identity = 154/231 (66.67%), Postives = 176/231 (76.19%), Query Frame = 1

Query:  643 GIQVLPVGSSKITLRMVDYNRGEYKALCAKFNARWIKPRPANGVSVVRIFSIKVSRWMRFKHALYT-FIFGNMCQRFHGTSCNEGCNFMLGPQGGEAVPCGKSSCSVCNICKLGFKLGTNVARTARATLFPLRYGAGIYLTSVSGKANDYAGRSAKKLGNGSELRCMFVASVALGNPFKTKRTGLPPDECPPSGYQSVVGEVGQGLNYDEFVVYREEAVLPTHLIVYALRH 1332
            G   + VGSS  TLR++D +  EY+ALC  F  RW+KP+P NGVS+VRIFSI+V   +  KH LY   +  N+ QRFHGTSCN+GCNFM+ PQG  A PCG SSCSVCNIC LGFKLG NVARTARA+  PLRYG GIY +SVSGKANDYA  SAK   +G+ELRCMFVA+VA G  F TK++ LP  ECPPSG QSVVGEVG  LNYDE VVY+EEA LPTHLIVYA RH
Sbjct:  449 GQSEISVGSSSSTLRILDDDDWEYEALCDLFKTRWLKPQPTNGVSIVRIFSIQVPLEVHDKHELYKRMVVVNLRQRFHGTSCNDGCNFMVDPQGATA-PCGLSSCSVCNICMLGFKLGKNVARTARASGIPLRYGTGIYFSSVSGKANDYARLSAKTGSDGAELRCMFVANVAGGKAFSTKKSHLPQSECPPSGCQSVVGEVGHALNYDEVVVYKEEAALPTHLIVYAPRH 678

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BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot
Match: D8LS88_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS88_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 1.430e-73
Identity = 126/225 (56.00%), Postives = 158/225 (70.22%), Query Frame = 1

Query:  652 VLPVGSSKITLRMVDYNRGEYKALCAKFNARWIKPRPANGVSVVRIFSIKVSRWMRFKHALYTFIFGNMCQRFHGTSCNEGCNFMLGPQGGEAVPCGKSSCSVCNICKLGFKLGTNVARTARATLFPLRYGAGIYLTSVSGKANDYAGRSAKKLGNGSELRCMFVASVALGNPFKTKRTGLPPDECPPSGYQSVVGEVGQGLNYDEFVVYREEAVLPTHLIVYAL 1326
            V  VG+ +  L  +D    E  +L ++F+ +W+KP+PA G+SVVRIF ++V   +R KH  Y     N+ +RFHGTSC++GCNF++ PQ     PCG  SCS+CNI   GFKL  NV RTA A  F LRYG G+Y +SVSGKANDYA  +AK   +G++LRCMFVA+VA G  + TK   L   +CPP GY+SVVGEVGQGLNYDE VVY+EEA LPTHLIVYAL
Sbjct:  227 VYSVGTPRFNLCALDEAHPECPSLRSQFSTKWVKPQPAEGISVVRIFRVEVPAEVRDKHDKYARTVRNIRRRFHGTSCSDGCNFIVDPQ---RSPCGLRSCSLCNISMRGFKLDENVGRTALARNFNLRYGKGVYFSSVSGKANDYADLTAKTAKDGTKLRCMFVANVAAGKAYSTKEKALDDGKCPPPGYESVVGEVGQGLNYDELVVYKEEAALPTHLIVYAL 448

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BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot
Match: A0A6H5JDH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDH1_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 3.440e-64
Identity = 126/227 (55.51%), Postives = 138/227 (60.79%), Query Frame = 1

Query:  652 VLPVGSSKITLRMVDYNRGEYKALCAKFNARWIKPRPANGVSVVRIFSIKVSRWMRFKHALYTFIFGNMCQRFHGTSCNEGCNFMLGPQGGEAVPCGKSSCSVCNICKLGFKLGTNVARTARATLFPLRYGAGIYLTSVSGKANDYAGRSAKKLGNGSELRCMFVASVALGNPFKTKRTGLPPDECPPSGYQSVVGEVGQGLNYDEFVVYREEAVLPTHLIVYALRH 1332
            +LPVGSS+ TLRM++ N  EY  L   FN RWIKPRPA GVS+ RIFSI                                       QGG+A PCGKSSC+VCNICKLGFKLG NVA TARAT  PLRYG   YLTSVSGKANDYA RSAK               + +GN        LP ++CPP G QSVVGEVGQGLN+DEFVVY EEA LPTHLIVYALRH
Sbjct:    6 ILPVGSSESTLRMLEGNGREYNTLRDLFNDRWIKPRPAKGVSIERIFSI---------------------------------------QGGQA-PCGKSSCTVCNICKLGFKLGANVAGTARATGVPLRYGEDTYLTSVSGKANDYASRSAK-------------VRMIMGNEAFFAAHQLPANQCPPPGCQSVVGEVGQGLNFDEFVVYNEEAALPTHLIVYALRH 179

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BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot
Match: D8LS87_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS87_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 6.310e-64
Identity = 117/223 (52.47%), Postives = 145/223 (65.02%), Query Frame = 1

Query:  664 GSSKITLRMVDYNRGEYKALCAKFNARWIKPRPANGVSVVRIFSIKVSRWMRFKHALYTFIFGNMCQRFHGTSCNEGCNFMLGPQGGEAVPCGKSSCSVCNICKLGFKLGTNVARTARATLFPLRYGAGIYLTSVSGKANDYAGRSAKKLGNGSELRCMFVASVALGNPFKTKRTGLPPDECPPSGYQSVVGEVGQGLNYDEFVVYREEAVLPTHLIVYALRH 1332
            G++   L ++      Y +L  +F  +W+KP P  G+SV +I +++V   +R K   Y    GN+ +RFHGTSC+  CNF +  +G    PC    C VC+IC  GF L  NV  TAR T F LRYG G+Y +SVSGKANDYA  S K   NG  LRCMFVA+VA G  FKT  T L  +ECPP+GY SVVGEVGQGLNYDE VVY++EA LPTHLIVY+ RH
Sbjct:  237 GTTDFKLCVLSKAHPHYPSLIDQFVNKWVKPEPVGGISVEKILTVEVPADVRRKTKTYEKTVGNVRRRFHGTSCSTKCNFFVDLRGN---PCSDKGCKVCSICTHGFTLQGNVGGTARRTNFGLRYGEGLYFSSVSGKANDYADFSEKTDSNGRRLRCMFVANVAAGKAFKTHETSLQQNECPPAGYDSVVGEVGQGLNYDELVVYKDEAALPTHLIVYS-RH 455

[Close]

BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot
Match: D8LS86_ECTSI (PARP catalytic domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS86_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 5.210e-58
Identity = 109/206 (52.91%), Postives = 138/206 (66.99%), Query Frame = 1

Query:  709 EYKALCAKFNARWIKPRPANGVSVVRIFSIKVSRWMRFKHALYTFIFGNMCQRFHGTSCNEGCNFMLGPQGGEAVPCGKSSCSVCNICKLGFKLGTNVARTARATLFPLRYGAGIYLTSVSGKANDYAGRSAKKLGNGSELRCMFVASVALGNPFKTKRTGLPPDECPPSGYQSVVGEVGQGLNYDEFVVYREEAVLPTHLIVYAL 1326
            EY +   +F  +W KP    GVSV+RIF ++V + +R +        GN+ +RFHGTSC+  C F +  +GG   PCG+S+C VCNIC  GF+L  NV  TAR T F LRYG G+Y +SVSGKANDYA  S K   +G ++RCMF++SV +G  F T    LPP++CPP G+ SVVGE G  LNY E VVY+EEA LPTHLIVYAL
Sbjct:  272 EYLSRKQQFMQKWEKPLVGTGVSVLRIFKVQVPKDIRRRTETCMGQVGNVQRRFHGTSCSNVCTFFVDLRGG---PCGESTCKVCNICTHGFQLRDNVGDTARRTNFDLRYGDGLYFSSVSGKANDYAELSEKTDRSGKKVRCMFLSSVTVGRAFITYEGKLPPEQCPPPGFDSVVGEKGPALNYPEVVVYKEEAALPTHLIVYAL 474

[Close]

BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot
Match: A0A6H5JYU8_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU8_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 2.010e-56
Identity = 108/196 (55.10%), Postives = 133/196 (67.86%), Query Frame = 1

Query:  655 LPVGSSKITLRMVDYNRGEYKALCAKFNARWIKPRPANGVSVVRIFSIKVSRWMRFKHALYTFIFG-NMCQRFHGTSCNEGCNFMLGPQGGEAVPCGKSSCSVCNICKLGFKLGTNVARTARATLFPLRYGAGIYLTSVSGKANDYAGRSAKKLGNGSELRCMFVASVALGNPFKTKRTGLPPDECPPSGYQSVVG 1239
            +PVGSS  TL M+D +  EY+ALC +F  +W+K +P  GVS+ RIFSI++   +R KH  Y      N  ++FHGTSCNE CNF++ PQ     PCG SSCSVC+IC  GFK+  NV  TAR T F LRYG G+Y +SVSGKANDYA  S K   +G  LRCMFVA VA GNP+ TK   LP ++CPPSG +SV G
Sbjct:  308 MPVGSS--TLHMLDQHDWEYEALCDQFRTKWLKFQPPRGVSIERIFSIQIDPAVRNKHDRYKLTVSINPRRQFHGTSCNEKCNFIVNPQ--REAPCGLSSCSVCSICMQGFKIKDNVGTTARRTGFSLRYGEGVYFSSVSGKANDYARFSQKTAPDGRRLRCMFVAYVAKGNPYLTKEASLPRNKCPPSGLESVEG 499

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig1250.1923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FXR2_ECTSI	1.870e-119	50.34	PARP catalytic domain-containing protein n=1 Tax=E...	[more]
A0A6H5JBF5_9PHAE	6.570e-117	76.75	PARP catalytic domain-containing protein n=1 Tax=E...	[more]
D8LKU9_ECTSI	1.100e-92	66.96	PARP catalytic domain-containing protein n=1 Tax=E...	[more]
D7FXR1_ECTSI	2.460e-92	76.88	PARP catalytic domain-containing protein n=1 Tax=E...	[more]
D8LKU5_ECTSI	4.060e-90	66.67	TPR repeat-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LS88_ECTSI	1.430e-73	56.00	PARP catalytic domain-containing protein n=1 Tax=E...	[more]
A0A6H5JDH1_9PHAE	3.440e-64	55.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LS87_ECTSI	6.310e-64	52.47	PARP catalytic domain-containing protein n=1 Tax=E...	[more]
D8LS86_ECTSI	5.210e-58	52.91	PARP catalytic domain-containing protein n=2 Tax=E...	[more]
A0A6H5JYU8_9PHAE	2.010e-56	55.10	PARP catalytic domain-containing protein n=1 Tax=E...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig1250	contig	E-fasciculatus_F_contig1250:1981..6278 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	301.2
Seed ortholog evalue	7.9e-79
Seed eggNOG ortholog	2880.D8LKU5
KEGG ko	ko:K06972
EggNOG free text desc.	determination of stomach left/right asymmetry
EggNOG OGs	COG0457@1,KOG1840@2759
COG Functional cat.	C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko01002
Hectar predicted targeting category	signal peptide
Exons	9
Model size	1479
Cds size	1335
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig1250.1923.1	prot_E-fasciculatus_F_contig1250.1923.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig1250 2125..6278 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927756.5529196-UTR-E-fasciculatus_F_contig1250:1980..2124	1622927756.5529196-UTR-E-fasciculatus_F_contig1250:1980..2124	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1250 1981..2124 -
1695995681.594761-UTR-E-fasciculatus_F_contig1250:1980..2124	1695995681.594761-UTR-E-fasciculatus_F_contig1250:1980..2124	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1250 1981..2124 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig1250:1981..6278-
coding sequence from alignment at E-fasciculatus_F_contig1250:1981..6278-

protein sequence of mRNA_E-fasciculatus_F_contig1250.1923.1

>prot_E-fasciculatus_F_contig1250.1923.1 ID=prot_E-fasciculatus_F_contig1250.1923.1|Name=mRNA_E-fasciculatus_F_contig1250.1923.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=445bp
MISQLLAVAIGAVLYVSLREATFQNGRIKEFVALDHLSYGTLKCCWWTLG
SVWKTMLCIWTALEVREYVQQRRPSTTCHRAHTYVGRHARCPIAWNSITR
GFHGYCDFTWAVSTIEVQLEFLEEVDFLRERAQMETTRAPLFSLPSPLQI
SDDRDDHLSKIGMILSTSVLSGESRCQRHTRSERTPNLAPCTCLVNERLC
AYRKTPSLFAVYNTGIQVLPVGSSKITLRMVDYNRGEYKALCAKFNARWI
KPRPANGVSVVRIFSIKVSRWMRFKHALYTFIFGNMCQRFHGTSCNEGCN
FMLGPQGGEAVPCGKSSCSVCNICKLGFKLGTNVARTARATLFPLRYGAG
IYLTSVSGKANDYAGRSAKKLGNGSELRCMFVASVALGNPFKTKRTGLPP
DECPPSGYQSVVGEVGQGLNYDEFVVYREEAVLPTHLIVYALRH*

mRNA from alignment at E-fasciculatus_F_contig1250:1981..6278-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig1250.1923.1 ID=mRNA_E-fasciculatus_F_contig1250.1923.1|Name=mRNA_E-fasciculatus_F_contig1250.1923.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4298bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1250:1981..6278- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATTTCCCAGTTGCTTGCCGTGGCCATTGGAGCCGTGCTGTATGTCTC
ATTGAGGGAGGCAACCTTCCAGGTACTGTACGACGAAGAAGTTGGAAAAG
GTCATCCAACTTGGCACCTACAGCAGTGTAGTCTATGATAAGCGCCATCT
ACAGTAGACTATCTGTCTTCGGAACTGACGGGATCAATGTAATAAGTAGC
ACATAATATTGGCTACGCATAGCAACGGCGGGACATGAGATCGATCGCAC
CATATCCGACCATTGTCGTCGCAGAATGGGCGGATCAAGGAATTCGTTGC
GTTGGACCACCTTTCGTATGGGACGTTGAAGTGCTGCTGGTGGACCTTGG
GCAGCGTGTGGAAGACTATGTTATGCATATGGACGGCGCTTGAGGTGAGA
GAGTGTCAATGAACATTAAACGCAATAATTTCAGATGATATATTGTTCGG
CCAAAAAGACTTCCCTCCTTTTTCGGCGGGGAAAACTAAAGAAGAAATTA
AATAACACTTACGAATTCCCCGTCGGACTCCCAGCTGCTGTTTTGTTGGG
CGTTGATGTGCTGCTGGTGGGCCTTGGGCAGTGTGTGGACGATCATGATA
TGGATAGCGAAACAGGTGAGAGAGTGTCAACGAACACCAAATACAATTTC
AGATGATATATTGTTCGGCCTGAAAGCCCCCTCCCTCTTCTTTCGGGGAA
AAGAAAAGAAGAAACAATAATTAACCTGAAAAAAAGAATATCAATAAGTT
ATCGGTTATTGTAGTGACCGACACCAATACTAGCACTTTTGGAATCTCAC
GTCGGACGCCCAGCTGTCGTATGGGATGTTGATGGGCCCTGGACAGTGTG
TGGAAGACAATGATATGGATAGCAACACAGGTGAGAAAGTGTTAATGATT
TCATGCGCCTGGGTGTTAAATCCCATGGGACGTCCTATAAGACGTCCAGC
AGAGACGTCCGTCCACGACATGTCATCGGGCGCATACATACGTGGGACGA
CACGCACGATGTCCCATTGCTTGGAATTCAATCACGCGAGGCTTCCATGG
CTACTGCGATTTCACCTGGGCGGTGTCTACAATAGAGGTACAACTCGAAT
TTCTCGAAGAGGTAAACATTAGACTGGTCGGTTTTCATGGACGGACGATT
TTTCTCTCGGCGTCCATGGAAATTAGGTCGACTTCCTCCGTGAAAGAGCA
CAAATGGAAACTACGCGTGCGCCATTATTTTCACTGCCGTCGCCCTTGCA
AATCTCTGATGATCGGGATGATCACCTATCGAAAATTGGTATGATATTGA
GCACTTCTGTCCTTTCAGGGGAATCCCGCTGCCAAAGGCACACACGCAGT
GAAAGGACACCGAATCTGGCGCCATGCACTTGTCTCGTGAACGAACGCCG
TCGAAAACTCAAGTTTCGCACCCAGGATGAGCGGTACGACTTGACATGAC
GATCAGAAACCTATCCCAACCAGCCGAAGACCGCCACCATGACAGCGCTA
CACACATTGCAGACACACGTTTTATCCTGGTATCACGGCGTGTGGCGCTG
AGTGTGCGCCTATCGAAAAACGCCCTCCCTGTTTGCTGTCTACAACACTG
GTATACAGGTGTTGCCTGTGGGCAGCAGCAAAATTACCCTGCGAATGGTT
GACTACAATCGCGGGGAGTACAAGGCCCTATGCGCTAAGTTCAACGCTCG
GTGGATTAAGCCAAGGCCGGCAAATGGTGTTTCGGTCGTGCGCATCTTCA
GCATCAAGGTGTAATGACCCCAGCTAGTGGTGGAATGTATATCTTTGAAG
AAGCGCATTCGTTAGAACCGAACATACAACAGCACATGTGTGCATGAGTC
GCGAATACAATATTCAATAGAACACCAGACAAGTTGGCCCAAGCAGTACA
TGGGACATCTCGCTTCCCTTGTTTTTTGAACTACCAAACCGTGACGGACG
CTCCGAATGGCTTGATTTTACTTTGCCACGTGCCTCGCCACGACATGCCA
AAATGGGCAGATTTACAAGAAGTCATTTCAGCAATCCCTAACCGCGTTAC
AGTGTTGAAAGTAAGAGTAGAACAGTCAACATTTGGGGCAGGATCTATTT
TCCGCACTCGCTAGTCTTGCTGTTATTCGTTGACCAGCTTTAACGTCCCT
GCCCGTTCCCCTGCCAAGGTCTCTCGTTGGATGCGTTTCAAGCACGCGTT
ATACACATTTATTTTCGGGAATATGTGCCAACGCTTTCATGGCACCTCCT
GCAACGAAGGGTGCAACTTCATGCTGGGCCCACAGGTGAACAACAGCCCT
TCCAATAGTAGGCTCGTGCATCGTAGGTATTGGTTTGGCCCCCGTCACTT
CTTCCCGATCGGTTCCGAACCACGCTCCGGCGCCCAGGTCTCCTGCATTC
TGCCTTCCTTTTTCGCGCAGTTCGTCGTCAGTCAACCTTGTACACTCGGT
CGGGGTCTGTTGACGTGCAGGGCGGAGAGGCAGTCCCGTGCGGGAAGAGC
AGCTGCAGCGTCTGCAACATCTGCAAGCTAGGCTTCAAACTGGGAACCAA
CGTCGCCCGCACGGCCCGGGCAACCCTTTTCCCGCTTCGGTATGGGGCGG
GCATCTACTTGACAAGCGTGTCGGGCAAGGCAAACGACTACGCCGGGCGC
TCGGCCAAGGTGCGCATGATGATGGGATAGGGAATGAGGGTTTCCTCGCG
ACACACCAAGGTGTTCTTTCTCAGCGAAGGGGCGACATGCACACTCCTGC
CCGGCGCAGGAGCCCTCGTCCAATCCACTACTTACATATACTTCAAATTA
TCCTCGGTATATGGAGACAGAATACGTCAGATAGCCTCGCAGCGGGCAAC
CCACGCTATTCCATCGACGGAGCACCTTCCCACGTATCATCCATGTTCAA
TAGTAACGGTCAGGGACCGGTTTCCCCGTTTGGGGTGGAGAGGGTAGACA
AGACCCAACTTTCTATAGCAAGCCGCTCGTCAGTCCATTGGCGGCCTGCT
GGCTAAAGAACAAACGGGATGAAATGATGCGTCCCTCTCGCCGCCGCATG
TATGCGCTCCCATCTGATCCCTTTTTGTCTCGCTCGCACCCGGCCCTCGT
TGTCCTCTTCGTCTTGAACGTCATCATCAGAAACTCGGCAACGGCTCGGA
GCTGAGGTGCATGTTCGTCGCCAGCGTCGCCCTGGGGAACCCGTTCAAAA
CCAAGAGAACTGGGCTCCCGCCAGACGAGTGCCCGCCTTCTGGCTACCAA
TCTGTGGTGGGAGAGGTATGCAATCGCCATCGAGTGAGGGAAATCAACTC
TCTCTACTGACTACAGTAGACTCTTTTACATAGAAACAATGCAGTTACCA
TTGGCGTGGTTGCAAGTGCTACCATTCGGATCTTGGGTTTCGCCCGTCTC
GAGGTGAACGGCTCCAAACAAAGCTGAGAAACGCGTTCTGCCCGCCCTTC
CATAGCGCAAGACTCCGTTTTCTCCGCCCCGTGACATCCAAAACAAGAGC
TTGTCGTAGTCGGGGAGTCTCTGCGTACGCCAAGCCGTGCGCAGCCGCGG
TTGTCAAGGCTGCGGCGCTTTGCCTTCCCGCTCTGTTTTTGCGGTTGCGG
GGGCCGGCGTTGCGCTGCTGGTCACAGAACGCGGTACTTCTGTGCGGCTA
CTGGCCGTCCACACATTCAATAGTCTAGTTCACATTGTGTACCGTAGATA
TCTCGTGGCAGAATCGACGTCATAATGTGCAAGTCGGAACAGACATTATC
TTGCTCGGCCTGGTTCTCCCAGCGTTGAGCGGAGATGCACGAGAAGGTAT
GCATACGCGCACTCGCAACGAGGACACCCCGAAGACGCCGTGGGACATGC
AAGAGTGATTTGGCGCTCTGTCGTTTCCCGCCGGTCCTGCTCGTTGCTGC
ACGCGTTCCAGCATCACGAGGCCTCCATCGTCGAAGATATTGATTGGGAT
TCCTGGCTCGCGTGTTGTTTATCGCTGAATATATATACCCGAGATGGAGG
ACACGGCAGCCGAAACGTAAGCCCTGTGCCGCCCGTCCCACCTCGGTCGT
CGCTCGGTCAGGTGGGCCAAGGGCTAAACTACGACGAGTTCGTGGTGTAC
AGGGAGGAGGCGGTTCTGCCAACCCACCTCATCGTGTATGCTCTTCGGCA
CTGAGTACGACGAGGTCAAAGCTGCGCGGGGCGATGTGTTCCAGTGGTCC
TGATTCTGCGTTGCACGCCGAACACCAGTAGGGACGGTGGTGCGAATATC
TGCGATTACGAGGGCGCGGCTCGCCCTTACCGCCTGCTATCGTAGGGC

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1250:1981..6278-

>mRNA_E-fasciculatus_F_contig1250.1923.1 ID=mRNA_E-fasciculatus_F_contig1250.1923.1|Name=mRNA_E-fasciculatus_F_contig1250.1923.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2670bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1250:1981..6278- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATTTCCCAGTTGCTTGCCGTGGCCATTGGAGCCGTGCTGTATGTCTC
ATTGAGGGAGGCAACCTTCCAGATGATTTCCCAGTTGCTTGCCGTGGCCA
TTGGAGCCGTGCTGTATGTCTCATTGAGGGAGGCAACCTTCCAGAATGGG
CGGATCAAGGAATTCGTTGCGTTGGACCACCTTTCGTATGGGACGTTGAA
GTGCTGCTGGTGGACCTTGGGCAGCGTGTGGAAGACTATGTTATGCATAT
GGACGGCGCTTGAGGTGAGAGAGTAATGGGCGGATCAAGGAATTCGTTGC
GTTGGACCACCTTTCGTATGGGACGTTGAAGTGCTGCTGGTGGACCTTGG
GCAGCGTGTGGAAGACTATGTTATGCATATGGACGGCGCTTGAGGTGAGA
GAGTACGTCCAGCAGAGACGTCCGTCCACGACATGTCATCGGGCGCATAC
ATACGTGGGACGACACGCACGATGTCCCATTGCTTGGAATTCAATCACGC
GAGGCTTCCATGGCTACTGCGATTTCACCTGGGCGGTGTCTACAATAGAG
GTACAACTCGAATTTCTCGAAGAGACGTCCAGCAGAGACGTCCGTCCACG
ACATGTCATCGGGCGCATACATACGTGGGACGACACGCACGATGTCCCAT
TGCTTGGAATTCAATCACGCGAGGCTTCCATGGCTACTGCGATTTCACCT
GGGCGGTGTCTACAATAGAGGTACAACTCGAATTTCTCGAAGAGGTCGAC
TTCCTCCGTGAAAGAGCACAAATGGAAACTACGCGTGCGCCATTATTTTC
ACTGCCGTCGCCCTTGCAAATCTCTGATGATCGGGATGATCACCTATCGA
AAATTGGTATGATATTGAGCACTTCTGTCCTTTCAGGGGAATCCCGCTGC
CAAAGGCACACACGCAGTGAAAGGACACCGAATCTGGCGCCATGCACTTG
TCTCGTGAACGAACGCCGTCGACTTCCTCCGTGAAAGAGCACAAATGGAA
ACTACGCGTGCGCCATTATTTTCACTGCCGTCGCCCTTGCAAATCTCTGA
TGATCGGGATGATCACCTATCGAAAATTGGTATGATATTGAGCACTTCTG
TCCTTTCAGGGGAATCCCGCTGCCAAAGGCACACACGCAGTGAAAGGACA
CCGAATCTGGCGCCATGCACTTGTCTCGTGAACGAACGCCTGTGCGCCTA
TCGAAAAACGCCCTCCCTGTTTGCTGTCTACAACACTGGTATACAGGTGT
TGCCTGTGGGCAGCAGCAAAATTACCCTGCGAATGGTTGACTACAATCGC
GGGGAGTACAAGGCCCTATGCGCTAAGTTCAACGCTCGGTGGATTAAGCC
AAGGCCGGCAAATGGTGTTTCGGTCGTGCGCATCTTCAGCATCAAGTGTG
CGCCTATCGAAAAACGCCCTCCCTGTTTGCTGTCTACAACACTGGTATAC
AGGTGTTGCCTGTGGGCAGCAGCAAAATTACCCTGCGAATGGTTGACTAC
AATCGCGGGGAGTACAAGGCCCTATGCGCTAAGTTCAACGCTCGGTGGAT
TAAGCCAAGGCCGGCAAATGGTGTTTCGGTCGTGCGCATCTTCAGCATCA
AGGTCTCTCGTTGGATGCGTTTCAAGCACGCGTTATACACATTTATTTTC
GGGAATATGTGCCAACGCTTTCATGGCACCTCCTGCAACGAAGGGTGCAA
CTTCATGCTGGGCCCACAGGTCTCTCGTTGGATGCGTTTCAAGCACGCGT
TATACACATTTATTTTCGGGAATATGTGCCAACGCTTTCATGGCACCTCC
TGCAACGAAGGGTGCAACTTCATGCTGGGCCCACAGGGCGGAGAGGCAGT
CCCGTGCGGGAAGAGCAGCTGCAGCGTCTGCAACATCTGCAAGCTAGGCT
TCAAACTGGGAACCAACGTCGCCCGCACGGCCCGGGCAACCCTTTTCCCG
CTTCGGTATGGGGCGGGCATCTACTTGACAAGCGTGTCGGGCAAGGCAAA
CGACTACGCCGGGCGCTCGGCCAAGGGCGGAGAGGCAGTCCCGTGCGGGA
AGAGCAGCTGCAGCGTCTGCAACATCTGCAAGCTAGGCTTCAAACTGGGA
ACCAACGTCGCCCGCACGGCCCGGGCAACCCTTTTCCCGCTTCGGTATGG
GGCGGGCATCTACTTGACAAGCGTGTCGGGCAAGGCAAACGACTACGCCG
GGCGCTCGGCCAAGAAACTCGGCAACGGCTCGGAGCTGAGGTGCATGTTC
GTCGCCAGCGTCGCCCTGGGGAACCCGTTCAAAACCAAGAGAACTGGGCT
CCCGCCAGACGAGTGCCCGCCTTCTGGCTACCAATCTGTGGTGGGAGAGA
AACTCGGCAACGGCTCGGAGCTGAGGTGCATGTTCGTCGCCAGCGTCGCC
CTGGGGAACCCGTTCAAAACCAAGAGAACTGGGCTCCCGCCAGACGAGTG
CCCGCCTTCTGGCTACCAATCTGTGGTGGGAGAGGTGGGCCAAGGGCTAA
ACTACGACGAGTTCGTGGTGTACAGGGAGGAGGCGGTTCTGCCAACCCAC
CTCATCGTGTATGCTCTTCGGCACTGAGTGGGCCAAGGGCTAAACTACGA
CGAGTTCGTGGTGTACAGGGAGGAGGCGGTTCTGCCAACCCACCTCATCG
TGTATGCTCTTCGGCACTGA