mRNA_E-fasciculatus_F_contig12491.1917.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12491.1917.1 vs. uniprot
Match: D8LGY8_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY8_ECTSI) HSP 1 Score: 508 bits (1308), Expect = 3.990e-163 Identity = 357/464 (76.94%), Postives = 367/464 (79.09%), Query Frame = 1
Query: 43 MPVLESAVGSEASLSLPRAVETCDDQAGQEEEKIRQRQSHEQRNEGGASLQDVKRALRNNFHATGVIDDVTARLRRQFVLELRRKGLGVPGAQEAAVAAGSSRRRRSPSGISLQERVFHSLVVDHLASNGLLQSLAVFLPESGLGGGXXXXXXXXXXXXXXXXXPAAEAALSREDLLQALPIPADSALFRRVIRRAEEGEGKDAGPVRCCSDGETAAGPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSRQQKRVCGLLEALVGEVATRSRAVAVDSNTQTDEAGRSHKENLVSRLEAVRETWLRRSADERREPAQDVTERMLAYQRECESRAAAQ----------IKAERDSFRERDLAXXXXXXXXXXXXXXXXXXXXXXSQYDGRVERLQETERDREXXXXXXXXXXXXXXXXXXXXXXXEMDLLRTREQEIRRSAELDSRGV 1404
MPVLESAV SE S +LPR VET D+QA QEE+KIRQ +Q NEGGASL DVKRALR+NF ATGVIDDVTARLRRQFVLELRRKGLGVPGAQEAAVAAG+ RRRRSPSGISLQERV HSLVVDHLASNGLLQSLAVFLPESGLGGG PAAEAALSRED+LQALPIPADS LFRRVIRRAEEGEGK AG V C SDGETAA PGA XXXXXXXXXXXXXXXXXXXX SR+QKRVCGLLEALVGEVATRSRAVAVDSNTQTDEAGRSHKENLV+RLEAVRETWLRRSADERREPAQDVTERMLAYQRECESRAAAQ IKAERDSFRERDLA SQYD RVERLQETERDREXXXXXXXXXXXXXXXXXXXXXXX MDLLRTREQE+RRSAELDSRGV
Sbjct: 1 MPVLESAVESEVSFALPRVVETRDEQAEQEEQKIRQESHEQQPNEGGASLHDVKRALRDNFRATGVIDDVTARLRRQFVLELRRKGLGVPGAQEAAVAAGTCRRRRSPSGISLQERVLHSLVVDHLASNGLLQSLAVFLPESGLGGGSNCGNTATVGTGPGAA-PAAEAALSREDVLQALPIPADSNLFRRVIRRAEEGEGKAAGSV-CRSDGETAAVPGAAAGADTAVVSNASVAVXXXXXXXXXXXXXXXXXXXX---------SREQKRVCGLLEALVGEVATRSRAVAVDSNTQTDEAGRSHKENLVTRLEAVRETWLRRSADERREPAQDVTERMLAYQRECESRAAAQASCWVAPRLLIKAERDSFRERDLAALRVQMASTRRREVDAMRKELQSQYDARVERLQETERDREXXXXXXXXXXXXXXXXXXXXXXXXMDLLRTREQEVRRSAELDSRGV 453
BLAST of mRNA_E-fasciculatus_F_contig12491.1917.1 vs. uniprot
Match: A0A6H5KME2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KME2_9PHAE) HSP 1 Score: 283 bits (723), Expect = 3.640e-89 Identity = 170/238 (71.43%), Postives = 181/238 (76.05%), Query Frame = -1
Query: 394 LRCCPRLALPLVGQHSLRHILCWLASFVRGAPQPRLPHRFQTRDQVLLVAAPRLVRLRVGVNRDSAGSSGHLADKCLEQAADTLLLTRIPXXXXXXAGRCSNVTPASCSRRRLIQHXXXXIQHHGRISRSSRRRSRPCRCFPVAAAAHRARVFSLALFRPPDHASEESGVGRYR*RLQEVLSRERRLSRRSGTGASAGGSRXXXXXXPSP-EARLRQEHCQRLQQTVAGEVVHHKAME 1104
LRCCPRLALPLVGQH+LRHIL +A FVRGAPQPRL HRFQT +LLVAAPRLVRL VGVN DSA GHLADKCLEQAADT+ LTR P +G CS+VTPASCSR H ++HHGRIS S R R R RCF VAAA RARV +LALFRPPDHASEE G+ RYR RLQ V SRERRLSRRSGT ASA GSR XXX EARLRQE CQRLQQ VAGE+VHHKA E
Sbjct: 64 LRCCPRLALPLVGQHALRHILRRVAPFVRGAPQPRLSHRFQT---ILLVAAPRLVRLCVGVNHDSARPGGHLADKCLEQAADTVSLTRTPPAAD--SGCCSSVTPASCSR-----HRRRRVRHHGRISTSHRPRHR--RCFSVAAA-RRARVVALALFRPPDHASEEGGIDRYRQRLQHVFSRERRLSRRSGTRASADGSRDAAXXXXXXXEARLRQEDCQRLQQAVAGEMVHHKADE 288
BLAST of mRNA_E-fasciculatus_F_contig12491.1917.1 vs. uniprot
Match: A0A835Z6Y0_9STRA (LisH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y0_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 4.350e-13 Identity = 48/95 (50.53%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 187 SLQDVKRALRNNFHATGVIDDVTARLRRQFVLELRRKGLGVPGAQEAAVAAGSSRRRRSPSGISLQERVFHSLVVDHLASNGLLQSLAVFLPESG 471
SL +++ LR +F TGV+ D+TARLRRQFV EL + G P A +A VA R S + L +R +LV D L + GLLQSLAVFLPESG
Sbjct: 18 SLHELRDRLRTSFRETGVLADITARLRRQFVAELVQHHHGPP-AMKALVA------NRQISELPLTQRQLRNLVADFLRAQGLLQSLAVFLPESG 105
BLAST of mRNA_E-fasciculatus_F_contig12491.1917.1 vs. uniprot
Match: G5A2S0_PHYSP (LisH domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A2S0_PHYSP) HSP 1 Score: 52.8 bits (125), Expect = 8.260e-5 Identity = 34/98 (34.69%), Postives = 54/98 (55.10%), Query Frame = 1
Query: 187 SLQDVKRALRNNFHATGVIDDVTARLRRQFVLEL---RRKGLGVPGAQEAAVAAGSSRRRRSPSGISLQERVFHSLVVDHLASNGLLQSLAVFLPESG 471
SL+++K + + G ++ + A+LRR+F+ +L RR G A SR RS ++ E++ H LV ++LAS GL +LAVF+PE G
Sbjct: 21 SLEELKEGMFQSIRDNGTVELIRAQLRRRFIEKLQQQRRLRDDQDGENNA------SRANRSTQSLTPDEKLVHGLVAEYLASKGLENTLAVFVPEIG 112 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12491.1917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12491.1917.1 >prot_E-fasciculatus_F_contig12491.1917.1 ID=prot_E-fasciculatus_F_contig12491.1917.1|Name=mRNA_E-fasciculatus_F_contig12491.1917.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=468bp VLVGSSTRQLYATPMPVLESAVGSEASLSLPRAVETCDDQAGQEEEKIRQback to top mRNA from alignment at E-fasciculatus_F_contig12491:82..3996+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12491.1917.1 ID=mRNA_E-fasciculatus_F_contig12491.1917.1|Name=mRNA_E-fasciculatus_F_contig12491.1917.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3915bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12491:82..3996+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12491:82..3996+ >mRNA_E-fasciculatus_F_contig12491.1917.1 ID=mRNA_E-fasciculatus_F_contig12491.1917.1|Name=mRNA_E-fasciculatus_F_contig12491.1917.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2808bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12491:82..3996+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |