mRNA_E-fasciculatus_F_contig12466.1894.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12466.1894.1
Unique NamemRNA_E-fasciculatus_F_contig12466.1894.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12466.1894.1 vs. uniprot
Match: D7FH80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 5.170e-20
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 2 
Query:  116 SMATTEDEWGSAVARGDATKLAELVLDSCGSKPETALSILRNCISLLEKEVALSAPGSSPL 298
            S +   DEWG AVA GDATKLAELVL   G KPE ALS++R+C+S+LEKEVALS PGSSPL
Sbjct:    7 SSSARPDEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSSPL 67
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BLAST of mRNA_E-fasciculatus_F_contig12466.1894.1 vs. uniprot
Match: D7FTA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 8.280e-18
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  116 SMATTEDEWGSAVARGDATKLAELVLDSCGSKPETALSILRNCISLLEKEVALSAPGSSPLPT 304
            S +   D WGSAVA GDAT LAELVL  CG  P  ALSILR C+++LEKEVALSAP SSPLP+
Sbjct:    7 SGSARPDAWGSAVASGDATGLAELVLLWCGVLPHPALSILRRCVAVLEKEVALSAPTSSPLPS 69
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BLAST of mRNA_E-fasciculatus_F_contig12466.1894.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.240e-16
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:   77 RKNAYTAIEEQ*FSMATTEDEWGSAVARGDATKLAELVLDSCGSKPETALSILRNCISLLEKEVALSAPGSSPL 298
            R + YT +E    S + + D+WG AVA GDATKLAELVL   GS+PE ALS+LR C+ LLE+E A S P SSPL
Sbjct:   49 RIDTYTVMEGDVGSGSASPDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPL 122
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BLAST of mRNA_E-fasciculatus_F_contig12466.1894.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.220e-11
Identity = 39/52 (75.00%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:  143 GSAVARGDATKLAELVLDSCGSKPETALSILRNCISLLEKEVALSAPGSSPL 298
            GSAVA G ATKLAELVL    SKPE ALSI R C+SLLEKE A SA GSSPL
Sbjct:   71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPL 122
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BLAST of mRNA_E-fasciculatus_F_contig12466.1894.1 vs. uniprot
Match: D7FH98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH98_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 3.960e-10
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  134 DEWGSAVARGDATKLAELVLDSCGSKPETALSILRNCISLLEKEVALSAPGSSP 295
            DEW SAVA GDA KL++LVL S GS  E ALSIL++C+++LEK+ A +A G++P
Sbjct:    2 DEWNSAVAGGDAEKLSDLVLSSAGSSTEAALSILKSCVTILEKKQA-AATGTTP 54
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BLAST of mRNA_E-fasciculatus_F_contig12466.1894.1 vs. uniprot
Match: A0A6H5KI43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI43_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.890e-7
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 2 
Query:  134 DEWGSAVARGDATKLAELVLDSCGSKPETALSILRNCISLLEK 262
            DEW SAVA GDA KL++LVL S GS  + ALSIL++C+++LEK
Sbjct:    2 DEWKSAVAGGDAAKLSDLVLLSAGSSTDAALSILKSCVTMLEK 44
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BLAST of mRNA_E-fasciculatus_F_contig12466.1894.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.250e-6
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 2 
Query:  167 ATKLAELVLDSCGSKPETALSILRNCISLLEKEVALSAPGSSPLP 301
            AT+LA+LVL   GS+PE ALSIL++C+SLLEKE A SAP    +P
Sbjct:   56 ATRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVP 100
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12466.1894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FH80_ECTSI5.170e-2070.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTA8_ECTSI8.280e-1868.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE3.240e-1658.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI4.220e-1175.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH98_ECTSI3.960e-1059.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI43_9PHAE1.890e-762.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI1.250e-662.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12466contigE-fasciculatus_F_contig12466:1458..2357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12466.1894.1prot_E-fasciculatus_F_contig12466.1894.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12466 1576..2357 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927752.1402578-UTR-E-fasciculatus_F_contig12466:1457..15751622927752.1402578-UTR-E-fasciculatus_F_contig12466:1457..1575Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12466 1458..1575 +
1695995679.829173-UTR-E-fasciculatus_F_contig12466:1457..15751695995679.829173-UTR-E-fasciculatus_F_contig12466:1457..1575Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12466 1458..1575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927752.149703-CDS-E-fasciculatus_F_contig12466:1575..15911622927752.149703-CDS-E-fasciculatus_F_contig12466:1575..1591Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12466 1576..1591 +
1695995679.8396227-CDS-E-fasciculatus_F_contig12466:1575..15911695995679.8396227-CDS-E-fasciculatus_F_contig12466:1575..1591Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12466 1576..1591 +
1622927752.15796-CDS-E-fasciculatus_F_contig12466:2187..23571622927752.15796-CDS-E-fasciculatus_F_contig12466:2187..2357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12466 2188..2357 +
1695995679.858796-CDS-E-fasciculatus_F_contig12466:2187..23571695995679.858796-CDS-E-fasciculatus_F_contig12466:2187..2357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12466 2188..2357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12466.1894.1

>prot_E-fasciculatus_F_contig12466.1894.1 ID=prot_E-fasciculatus_F_contig12466.1894.1|Name=mRNA_E-fasciculatus_F_contig12466.1894.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=62bp
MATTEDEWGSAVARGDATKLAELVLDSCGSKPETALSILRNCISLLEKEV
ALSAPGSSPLPT
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mRNA from alignment at E-fasciculatus_F_contig12466:1458..2357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12466.1894.1 ID=mRNA_E-fasciculatus_F_contig12466.1894.1|Name=mRNA_E-fasciculatus_F_contig12466.1894.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12466:1458..2357+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGCGTGCCTGTTCATTCGTAGGCCCGGCCGACCTTCAACGGCCTCCCTG
GCTGCCTGTAGGTACTCTTCGACCCTCGCAAGAACGCCTACACCGCGATC
GAAGAACAGTAGTTTTCCATGGCTACCACCGAAGGTGAGAGGGCTGGGTT
CGGTTATCACTGCATCGACAGGACTGGGGTTTGCATATGGACCTACTAAA
TATTATATGGGGAAATTGGTTGTGGAGATCCTGCCACAACCCTCTATAAA
ATCCGGTATATACGTATGCACACATTACATACACCGTGCCGTGTGTGAAA
CGTGATCGCCTGCTGGACCGTTACGTATGTTGGAACGTACTGAGCAGGGA
CTGAAAAGGTTTATATTCGTGCAGACAGACACCAACAACAACAACAACAA
CAACAACAACAACAAAATGTATGCATGACTCGAGTTTGACGAGCACGGAG
TTGAACACCGAAGTTTCGAACCACAAAGTAACTATTTTGGGTGGCCTTCT
GGTTCTCACGCGGGATAAACTGGGTGTGTAGTCATTGAGTCCTAAAGAGC
GACAGAGAATATGCTACGGATCACTCAAGTGTACCCAACATGTTTGAAGC
GCCTTCGAAGATGATCGCTGTCTTCGGGAGTAGTGAGCAGGGTATGCGTC
CAACCTTGATAATTTGCAGCGACCAATCCGAAGCCACCCGAGCAACTCTG
ACCGCACTGGGCAAATTGGCGCTTCCGCAGATGAATGGGGTTCGGCTGTG
GCGAGGGGCGACGCGACCAAGCTAGCCGAGCTGGTGCTGGATTCGTGTGG
TTCAAAGCCCGAAACGGCCCTGTCGATTCTGAGAAACTGCATCTCTCTGC
TGGAGAAGGAGGTTGCTCTTTCTGCTCCGGGCTCTTCTCCCCTTCCAACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12466:1458..2357+

>mRNA_E-fasciculatus_F_contig12466.1894.1 ID=mRNA_E-fasciculatus_F_contig12466.1894.1|Name=mRNA_E-fasciculatus_F_contig12466.1894.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12466:1458..2357+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTACCACCGAAGATGGCTACCACCGAAGATGAATGGGGTTCGGCTG
TGGCGAGGGGCGACGCGACCAAGCTAGCCGAGCTGGTGCTGGATTCGTGT
GGTTCAAAGCCCGAAACGGCCCTGTCGATTCTGAGAAACTGCATCTCTCT
GCTGGAGAAGGAGGTTGCTCTTTCTGCTCCGGGCTCTTCTCCCCTTCCAA
CGATGAATGGGGTTCGGCTGTGGCGAGGGGCGACGCGACCAAGCTAGCCG
AGCTGGTGCTGGATTCGTGTGGTTCAAAGCCCGAAACGGCCCTGTCGATT
CTGAGAAACTGCATCTCTCTGCTGGAGAAGGAGGTTGCTCTTTCTGCTCC
GGGCTCTTCTCCCCTTCCAACG
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