mRNA_E-fasciculatus_F_contig12453.1883.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12453.1883.1
Unique NamemRNA_E-fasciculatus_F_contig12453.1883.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12453.1883.1 vs. uniprot
Match: A0A6H5JGJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ1_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 2.030e-79
Identity = 155/185 (83.78%), Postives = 159/185 (85.95%), Query Frame = 1 
Query:    1 EHWTKAATQLKAGAQQDVVDEEGGEGGAEAQVVAGVEAKKALASTLLVAPRLHPFNAAQFENFARNLGIALKQAPIVDRIEVEVYHPELVCDGGVIDLDRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPLDDAGDKDKSHDEADGPEGNSXXXXXXXXXXXXXXXXGPVGEVSADDAQL 555
            EHWTKAAT+LKAGAQQDV DE+ GEG AEA V AGVEAKK+LASTLLVAPRLHPFNAAQFENFAR L IALKQAPIVDRIEVEVYHPELVCDGGVIDLDRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPL+D                  XXXXXXXXXXXXXXXXGP GEVSADDAQL
Sbjct:  504 EHWTKAATKLKAGAQQDVADEDRGEGAAEAAVGAGVEAKKSLASTLLVAPRLHPFNAAQFENFARTLAIALKQAPIVDRIEVEVYHPELVCDGGVIDLDRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPLEDXXXXXXXXXXX-------XXXXXXXXXXXXXXXXGPFGEVSADDAQL 681
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BLAST of mRNA_E-fasciculatus_F_contig12453.1883.1 vs. uniprot
Match: D7G0L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L3_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.100e-35
Identity = 84/103 (81.55%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:  247 EVYHPELVCDGGVIDLDRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPLDDAGDKDKSHDEADGPEGNSXXXXXXXXXXXXXXXXGPVGEVSADDAQL 555
            +VYHPELVCDGGVID+DRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPL+D   +D+S +  D      XXXXXXXXXXXXXXXXGP GEVSADDAQL
Sbjct:  419 KVYHPELVCDGGVIDIDRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPLEDEDSEDESDNATDXXXXXXXXXXXXXXXXXXXXXXGPFGEVSADDAQL 521
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12453.1883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGJ1_9PHAE2.030e-7983.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0L3_ECTSI1.100e-3581.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12453contigE-fasciculatus_F_contig12453:878..2295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size575
Cds size558
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12453.1883.1prot_E-fasciculatus_F_contig12453.1883.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12453 893..2295 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.2630923-UTR-E-fasciculatus_F_contig12453:877..8921622927751.2630923-UTR-E-fasciculatus_F_contig12453:877..892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12453 878..892 -
1695995679.3880098-UTR-E-fasciculatus_F_contig12453:877..8921695995679.3880098-UTR-E-fasciculatus_F_contig12453:877..892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12453 878..892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.3278892-CDS-E-fasciculatus_F_contig12453:892..10731622927751.3278892-CDS-E-fasciculatus_F_contig12453:892..1073Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12453 893..1073 -
1695995679.3965487-CDS-E-fasciculatus_F_contig12453:892..10731695995679.3965487-CDS-E-fasciculatus_F_contig12453:892..1073Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12453 893..1073 -
1622927751.338267-CDS-E-fasciculatus_F_contig12453:1298..14261622927751.338267-CDS-E-fasciculatus_F_contig12453:1298..1426Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12453 1299..1426 -
1695995679.405173-CDS-E-fasciculatus_F_contig12453:1298..14261695995679.405173-CDS-E-fasciculatus_F_contig12453:1298..1426Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12453 1299..1426 -
1622927751.3566947-CDS-E-fasciculatus_F_contig12453:2046..22951622927751.3566947-CDS-E-fasciculatus_F_contig12453:2046..2295Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12453 2047..2295 -
1695995679.4140518-CDS-E-fasciculatus_F_contig12453:2046..22951695995679.4140518-CDS-E-fasciculatus_F_contig12453:2046..2295Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12453 2047..2295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12453.1883.1

>prot_E-fasciculatus_F_contig12453.1883.1 ID=prot_E-fasciculatus_F_contig12453.1883.1|Name=mRNA_E-fasciculatus_F_contig12453.1883.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=186bp
EHWTKAATQLKAGAQQDVVDEEGGEGGAEAQVVAGVEAKKALASTLLVAP
RLHPFNAAQFENFARNLGIALKQAPIVDRIEVEVYHPELVCDGGVIDLDR
RSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPLDDAGDKDKSHDEAD
GPEGNSSSSSSSSSSSSSAPPPGPVGEVSADDAQL*
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mRNA from alignment at E-fasciculatus_F_contig12453:878..2295-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12453.1883.1 ID=mRNA_E-fasciculatus_F_contig12453.1883.1|Name=mRNA_E-fasciculatus_F_contig12453.1883.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1418bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12453:878..2295- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGCACTGGACGAAGGCCGCGACGCAGTTGAAGGCCGGGGCCCAGCAAGA
TGTAGTAGATGAGGAGGGAGGGGAGGGGGGGGCGGAAGCACAAGTGGTTG
CGGGCGTCGAGGCAAAGAAGGCTCTGGCGTCGACCCTGCTGGTGGCGCCC
CGCCTACACCCGTTCAACGCGGCTCAGTTCGAGAACTTCGCGAGGAACCT
GGGCATCGCGCTTAAGCAGGCGCCCATTGTGGACCGGATCGAGGTGGAGG
TGGGTAGACGCGCTGCGGTGTGGCAGGCAGGGGGGGGCTCTTGTGTGTGT
TTTTGTTGGTAGCATCGACCGCGCTAACCGGCTGACCAATGACAAGACGT
CAGGCTCCGTGCGGTGGAAAACACAAAATGCTTCTATAGTCCACAATCTG
GGACCCTGTGACCGAGCGTCATGAGGGAGTCTACGCTTTTGTCCGGATTA
GAGGCAGATACTTGTGTGTGTGTTGTTGTTAGCATCGACCGCGCTAACCG
GCTGACCAATGAAAAGACGTGCGTGTGTTGTGTGTGTCGTCGTCGTGTAG
ACTAACCTTGTTGCCACTACACGAAATTTGTTCTTGTCCTTTTGGGAGCG
AATGTGCTGCTTCTGCTGCTGTCGGTGTGTTTTCAGGGGGGTGATTTGCG
CTTTGACTCGTGAGCTTCTTGGCACTGCTGTCGCTACTGGCGGTGCTATC
TAGCAGTCTGTTCCTGTCTGCTGCCGGTGTGTGCAGGTAGCTATGTGCAG
GCTCCCTGGTCACATACGGTGCCCCCCCTCTCCCTCCCCGCTTTCAATGG
GCCGCTTTTTTCTCGTGTGATCCGCAACCATCAACCCAAATCGCCCAACC
AACCGCGCGTGGCTTGCAGGTGTACCACCCAGAGTTGGTGTGCGATGGAG
GCGTCATCGATCTCGACCGCCGTTCGCCGTACCCGACCCTGCTCCTCAAG
CACTGCGGTCTAAAGGATGTTCTGTTCGAGCCCAGCGGGAACTACAGGTA
GAGAGCTGACGGTTGGCGAATATTAGACTTTCCATGCTTCGGTATTTGTA
CATACCATTGTCGTTGTTGATGGTCTTCGAACCTCCAGGCTGACCCCCCC
CGTGTGTGTGTGCTTGTTCAGCTAGCATCGACCGTGCCACCCGGCTGCCT
CACCACGATACTCCTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGCTTCCTCTCAGGCATGTCCTCCCCCCTCTCAAGCTCCCG
CTGGACGACGCTGGCGACAAAGACAAGAGCCACGACGAAGCGGACGGCCC
AGAGGGAAACTCCTCTTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCG
CGCCTCCCCCGGGCCCGGTAGGCGAGGTCTCCGCGGACGATGCCCAGCTT
TAGAGAGAGAGTCGTCGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12453:878..2295-

>mRNA_E-fasciculatus_F_contig12453.1883.1 ID=mRNA_E-fasciculatus_F_contig12453.1883.1|Name=mRNA_E-fasciculatus_F_contig12453.1883.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1116bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12453:878..2295- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGCACTGGACGAAGGCCGCGACGCAGTTGAAGGCCGGGGCCCAGCAAGA
TGTAGTAGATGAGGAGGGAGGGGAGGGGGGGGCGGAAGCACAAGTGGTTG
CGGGCGTCGAGGCAAAGAAGGCTCTGGCGTCGACCCTGCTGGTGGCGCCC
CGCCTACACCCGTTCAACGCGGCTCAGTTCGAGAACTTCGCGAGGAACCT
GGGCATCGCGCTTAAGCAGGCGCCCATTGTGGACCGGATCGAGGTGGAGG
AGCACTGGACGAAGGCCGCGACGCAGTTGAAGGCCGGGGCCCAGCAAGAT
GTAGTAGATGAGGAGGGAGGGGAGGGGGGGGCGGAAGCACAAGTGGTTGC
GGGCGTCGAGGCAAAGAAGGCTCTGGCGTCGACCCTGCTGGTGGCGCCCC
GCCTACACCCGTTCAACGCGGCTCAGTTCGAGAACTTCGCGAGGAACCTG
GGCATCGCGCTTAAGCAGGCGCCCATTGTGGACCGGATCGAGGTGGAGGT
GTACCACCCAGAGTTGGTGTGCGATGGAGGCGTCATCGATCTCGACCGCC
GTTCGCCGTACCCGACCCTGCTCCTCAAGCACTGCGGTCTAAAGGATGTT
CTGTTCGAGCCCAGCGGGAACTACAGGTGTACCACCCAGAGTTGGTGTGC
GATGGAGGCGTCATCGATCTCGACCGCCGTTCGCCGTACCCGACCCTGCT
CCTCAAGCACTGCGGTCTAAAGGATGTTCTGTTCGAGCCCAGCGGGAACT
ACAGGCATGTCCTCCCCCCTCTCAAGCTCCCGCTGGACGACGCTGGCGAC
AAAGACAAGAGCCACGACGAAGCGGACGGCCCAGAGGGAAACTCCTCTTC
CTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCGCGCCTCCCCCGGGCCCGG
TAGGCGAGGTCTCCGCGGACGATGCCCAGCTTTAGGCATGTCCTCCCCCC
TCTCAAGCTCCCGCTGGACGACGCTGGCGACAAAGACAAGAGCCACGACG
AAGCGGACGGCCCAGAGGGAAACTCCTCTTCCTCTTCCTCTTCCTCCTCC
TCCTCCTCCTCCGCGCCTCCCCCGGGCCCGGTAGGCGAGGTCTCCGCGGA
CGATGCCCAGCTTTAG
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