mRNA_E-fasciculatus_F_contig12398.1842.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12398.1842.1
Unique NamemRNA_E-fasciculatus_F_contig12398.1842.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12398.1842.1 vs. uniprot
Match: A0A6H5JW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW72_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.130e-38
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:   46 GDAVCQGMEQFDTERKFAWDHARTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPM 261
            GDA+CQ ME F TERKFAWDH RTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAV+TKLGVSVAVLPPM
Sbjct:   38 GDALCQAMETFGTERKFAWDHTRTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVMTKLGVSVAVLPPM 109
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BLAST of mRNA_E-fasciculatus_F_contig12398.1842.1 vs. uniprot
Match: D7G038_ECTSI (Integral membrane protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G038_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.960e-35
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:   67 MEQFDTERKFAWDHARTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPM 261
            ME F TERKFAWDHARTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPM
Sbjct:    1 METFGTERKFAWDHARTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPM 65
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BLAST of mRNA_E-fasciculatus_F_contig12398.1842.1 vs. uniprot
Match: A0A835ZBN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBN1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.100e-11
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:   46 GDAVCQGMEQFDTERKFAWDHARTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPMV 264
            GD  CQ ME  D +  + W+ ART R+  TG F +TP S  WN  AERL PGR ++A++ KL V +  +PPM+
Sbjct:   35 GDVACQVMEA-DDKLHWKWNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMI 106
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12398.1842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JW72_9PHAE1.130e-3891.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G038_ECTSI1.960e-3596.92Integral membrane protein-like protein n=1 Tax=Ect... [more]
A0A835ZBN1_9STRA1.100e-1146.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12398contigE-fasciculatus_F_contig12398:74..367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue7e-28
Seed eggNOG ortholog2880.D7G038
Preferred nameSYM1
KEGG koko:K03259,ko:K13348,ko:K13349
KEGG Pathwayko01521,ko03013,ko04066,ko04146,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04146,map04150,map04151,map04211,map04910
KEGG ModuleM00428
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006066,GO:0006067,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016999,GO:0017144,GO:0019866,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901615
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-12_007090.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927745.73091-CDS-E-fasciculatus_F_contig12398:73..3671622927745.73091-CDS-E-fasciculatus_F_contig12398:73..367Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12398 74..367 -
1695995676.7826219-CDS-E-fasciculatus_F_contig12398:73..3671695995676.7826219-CDS-E-fasciculatus_F_contig12398:73..367Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12398 74..367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12398.1842.1prot_E-fasciculatus_F_contig12398.1842.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12398 74..367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12398.1842.1

>prot_E-fasciculatus_F_contig12398.1842.1 ID=prot_E-fasciculatus_F_contig12398.1842.1|Name=mRNA_E-fasciculatus_F_contig12398.1842.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=98bp
LSFLRTTRAAGVWLTGDAVCQGMEQFDTERKFAWDHARTMRMGITGAFFV
TPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPMVRQTAAYSEML
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mRNA from alignment at E-fasciculatus_F_contig12398:74..367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12398.1842.1 ID=mRNA_E-fasciculatus_F_contig12398.1842.1|Name=mRNA_E-fasciculatus_F_contig12398.1842.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=294bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12398:74..367- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTCCTTTCTCCGAACCACTCGCGCTGCTGGTGTGTGGTTAACAGGGGA
CGCGGTCTGCCAAGGGATGGAACAGTTTGACACGGAGAGAAAGTTCGCTT
GGGACCACGCCCGCACCATGCGGATGGGGATAACGGGAGCGTTCTTCGTG
ACGCCCGCTAGCTTCGCGTGGAACATGTACGCCGAGCGCCTGGCCCCGGG
GCGATCGCTCCGGGCGGTGGTGACGAAGCTCGGGGTGTCCGTGGCGGTAC
TTCCGCCGATGGTGAGGCAGACGGCGGCCTACTCGGAAATGCTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12398:74..367-

>mRNA_E-fasciculatus_F_contig12398.1842.1 ID=mRNA_E-fasciculatus_F_contig12398.1842.1|Name=mRNA_E-fasciculatus_F_contig12398.1842.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=588bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12398:74..367- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTCCTTTCTCCGAACCACTCGCGCTGCTGGTGTGTGGTTAACAGGGGA
CGCGGTCTGCCAAGGGATGGAACAGTTTGACACGGAGAGAAAGTTCGCTT
GGGACCACGCCCGCACCATGCGGATGGGGATAACGGGAGCGTTCTTCGTG
ACGCCCGCTAGCTTCGCGTGGAACATGTACGCCGAGCGCCTGGCCCCGGG
GCGATCGCTCCGGGCGGTGGTGACGAAGCTCGGGGTGTCCGTGGCGGTAC
TTCCGCCGATGGTGAGGCAGACGGCGGCCTACTCGGAAATGCTCTTGTCC
TTTCTCCGAACCACTCGCGCTGCTGGTGTGTGGTTAACAGGGGACGCGGT
CTGCCAAGGGATGGAACAGTTTGACACGGAGAGAAAGTTCGCTTGGGACC
ACGCCCGCACCATGCGGATGGGGATAACGGGAGCGTTCTTCGTGACGCCC
GCTAGCTTCGCGTGGAACATGTACGCCGAGCGCCTGGCCCCGGGGCGATC
GCTCCGGGCGGTGGTGACGAAGCTCGGGGTGTCCGTGGCGGTACTTCCGC
CGATGGTGAGGCAGACGGCGGCCTACTCGGAAATGCTC
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