mRNA_E-fasciculatus_F_contig12375.1829.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12375.1829.1
Unique NamemRNA_E-fasciculatus_F_contig12375.1829.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12375.1829.1 vs. uniprot
Match: A0A6H5KI41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI41_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 9.190e-15
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   10 RTCNGMVLPCSPWNLDRCVSPAQAQNLFEAGDWS 111
            RTCNGMVLPCSPWNL RCVSPAQAQ LFEAGDWS
Sbjct:  163 RTCNGMVLPCSPWNLGRCVSPAQAQTLFEAGDWS 196
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BLAST of mRNA_E-fasciculatus_F_contig12375.1829.1 vs. uniprot
Match: A0A1L9SD76_9EURO (Uncharacterized protein n=1 Tax=Penicilliopsis zonata CBS 506.65 TaxID=1073090 RepID=A0A1L9SD76_9EURO)

HSP 1 Score: 50.1 bits (118), Expect = 1.440e-5
Identity = 21/36 (58.33%), Postives = 24/36 (66.67%), Query Frame = 1 
Query:    1 FAFRTCNGMVLPCSPWNLDRCVSPAQAQNLFEAGDW 108
            F  R CNG  LPCS  NL  CV+ AQA+ +F AGDW
Sbjct:  299 FQARLCNGYELPCSRANLSECVTQAQAEEIFRAGDW 334
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BLAST of mRNA_E-fasciculatus_F_contig12375.1829.1 vs. uniprot
Match: A0A0C3GM31_9PEZI (Uncharacterized protein n=1 Tax=Oidiodendron maius Zn TaxID=913774 RepID=A0A0C3GM31_9PEZI)

HSP 1 Score: 48.5 bits (114), Expect = 5.040e-5
Identity = 24/58 (41.38%), Postives = 30/58 (51.72%), Query Frame = 1 
Query:    1 FAFRTCNGMVLPCSPWNLDRCVSPAQAQNLFEAGDWSXXXXXXGVPIVVHAVVVVRPL 174
            F  R CNG  LPC   N   CV+ AQA+ +F AGDW         P VV  + +V+ L
Sbjct:  302 FQGRLCNGYKLPCDFTNTSNCVTTAQAEEIFRAGDWEWNYYWRNNPDVVEYIQLVQGL 359
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12375.1829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KI41_9PHAE9.190e-1594.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1L9SD76_9EURO1.440e-558.33Uncharacterized protein n=1 Tax=Penicilliopsis zon... [more]
A0A0C3GM31_9PEZI5.040e-541.38Uncharacterized protein n=1 Tax=Oidiodendron maius... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12375contigE-fasciculatus_F_contig12375:3669..3888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_000680.1
Exons2
Model size174
Cds size150
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12375.1829.1prot_E-fasciculatus_F_contig12375.1829.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12375 3669..3864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927743.9472933-CDS-E-fasciculatus_F_contig12375:3668..37321622927743.9472933-CDS-E-fasciculatus_F_contig12375:3668..3732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12375 3669..3732 -
1695995676.0304317-CDS-E-fasciculatus_F_contig12375:3668..37321695995676.0304317-CDS-E-fasciculatus_F_contig12375:3668..3732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12375 3669..3732 -
1622927743.9602206-CDS-E-fasciculatus_F_contig12375:3778..38641622927743.9602206-CDS-E-fasciculatus_F_contig12375:3778..3864Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12375 3779..3864 -
1695995676.0463917-CDS-E-fasciculatus_F_contig12375:3778..38641695995676.0463917-CDS-E-fasciculatus_F_contig12375:3778..3864Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12375 3779..3864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927743.9702547-UTR-E-fasciculatus_F_contig12375:3864..38881622927743.9702547-UTR-E-fasciculatus_F_contig12375:3864..3888Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12375 3865..3888 -
1695995676.0595672-UTR-E-fasciculatus_F_contig12375:3864..38881695995676.0595672-UTR-E-fasciculatus_F_contig12375:3864..3888Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12375 3865..3888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12375.1829.1

>prot_E-fasciculatus_F_contig12375.1829.1 ID=prot_E-fasciculatus_F_contig12375.1829.1|Name=mRNA_E-fasciculatus_F_contig12375.1829.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=50bp
MVLPCSPWNLDRCVSPAQAQNLFEAGDWSWRWGWGGVPIVVHAVVVVRPL
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mRNA from alignment at E-fasciculatus_F_contig12375:3669..3888-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12375.1829.1 ID=mRNA_E-fasciculatus_F_contig12375.1829.1|Name=mRNA_E-fasciculatus_F_contig12375.1829.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=220bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12375:3669..3888- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGCTTTTAGGACATGCAACGGGATGGTGCTACCGTGCAGTCCGTGGAA
CTTGGATCGGTGCGTCAGCCCGGCGCAGGCTCAGAACCTTTTCGAAGCGG
GGGACTGGTCGTTTCACCGCAAGTACACGTTTAAGGTGGGTGCCAGCAGA
GCAGAGTTGGCGTTGGGGATGGGGGGGGGTACCCATAGTCGTGCATGCCG
TGGTCGTCGTTAGACCATTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12375:3669..3888-

>mRNA_E-fasciculatus_F_contig12375.1829.1 ID=mRNA_E-fasciculatus_F_contig12375.1829.1|Name=mRNA_E-fasciculatus_F_contig12375.1829.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12375:3669..3888- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGCTACCGTGCAGTCCGTGGAACTTGGATCGGTGCGTCAGCCCGGC
GCAGGCTCAGAACCTTTTCGAAGCGGGGGACTGGTCATGGTGCTACCGTG
CAGTCCGTGGAACTTGGATCGGTGCGTCAGCCCGGCGCAGGCTCAGAACC
TTTTCGAAGCGGGGGACTGGTCTTGGCGTTGGGGATGGGGGGGGGTACCC
ATAGTCGTGCATGCCGTGGTCGTCGTTAGACCATTGTTGGCGTTGGGGAT
GGGGGGGGGTACCCATAGTCGTGCATGCCGTGGTCGTCGTTAGACCATTG
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