mRNA_E-fasciculatus_F_contig12341.1808.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12341.1808.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI) HSP 1 Score: 191 bits (486), Expect = 1.460e-54 Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 1
Query: 1 RYLPECANNLSREFKMDILPAGARCAMQHMPRESRPFMGPNLYITPPGSWTQFHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRIL 279
RYLPECANNLSREFKMDILPAGARCAMQHMPRESR FMGPNLYITPPGSWTQ HQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRIL
Sbjct: 270 RYLPECANNLSREFKMDILPAGARCAMQHMPRESRTFMGPNLYITPPGSWTQCHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRIL 362
BLAST of mRNA_E-fasciculatus_F_contig12341.1808.1 vs. uniprot
Match: A0A7S2DKI0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKI0_9STRA) HSP 1 Score: 131 bits (330), Expect = 1.420e-35 Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 1
Query: 1 RYLPECANNLSREFKMDILPAGARCAMQHMPRESRPFMGPNLYITPPGSWTQFHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRILAG 285
+YLPE +L+R K+D+LP G RC ++H+P PFMGPNLYITPPG++T FHQDG+GTVDSGH CL GRN V+MLRRLD E +K ALRIL G
Sbjct: 55 KYLPELQADLTRHLKLDLLPRGERCMLRHLPLNGHPFMGPNLYITPPGTFTHFHQDGHGTVDSGHLCLRGRNEVVMLRRLD-EPNKLRALRILNG 148
BLAST of mRNA_E-fasciculatus_F_contig12341.1808.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA) HSP 1 Score: 134 bits (336), Expect = 2.430e-34 Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 1
Query: 1 RYLPECANNLSREFKMDILPAGARCAMQHMPRESRPFMGPNLYITPPGSWTQFHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRILAGG 288
++LPE +L R FK+D+LP G RC +H+P PFMGPNLYITPPG++T FHQDG+GTVDSGHQCL GRN V+MLRR+D E +KR ALRIL G
Sbjct: 644 KHLPELFCDLERNFKVDLLPRGRRCLFRHLPLRGHPFMGPNLYITPPGTFTHFHQDGHGTVDSGHQCLRGRNEVVMLRRMD-EPNKRHALRILCKG 738
BLAST of mRNA_E-fasciculatus_F_contig12341.1808.1 vs. uniprot
Match: A0A7S1CQ01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ01_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.350e-30 Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = 1
Query: 7 LPECANNLSREFKMDILPAGARCAMQHMPRESRPFMGPNLYITPPGSWTQFHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRILA 282
LP A +L+ + ++ LPAG+ C +Q +P + RPFMGPNLY+TPPGS+T H+DG GT+DSGHQ + G N VIMLRR+D E KRAA+RI+A
Sbjct: 36 LPNLAADLAANYGIETLPAGSNCMLQALPEKGRPFMGPNLYVTPPGSFTWTHEDGRGTLDSGHQTITGYNEVIMLRRMD-EVGKRAAMRIMA 126
BLAST of mRNA_E-fasciculatus_F_contig12341.1808.1 vs. uniprot
Match: A0A7S2VFF2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VFF2_9STRA) HSP 1 Score: 105 bits (261), Expect = 4.150e-26 Identity = 54/94 (57.45%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 7 LPECANNLSREFKMD-ILPAGARCAMQHMPRESRPFMGPNLYITPPGSWTQFHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRILAG 285
LP+ +L FK+ ILP G+ C M + RPFMGPNLYITPP S+T FHQDG+GTVDSGH CL+G N V+MLRRL E K AL +L G
Sbjct: 1 LPKSFEDLQNNFKLSSILPGGSHCMMNAVNINGRPFMGPNLYITPPSSFTHFHQDGHGTVDSGHLCLSGYNEVVMLRRLP-ERHKCRALELLNG 93
BLAST of mRNA_E-fasciculatus_F_contig12341.1808.1 vs. uniprot
Match: K0SGJ8_THAOC (C2H2-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGJ8_THAOC) HSP 1 Score: 109 bits (272), Expect = 1.070e-25 Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 1
Query: 1 RYLPECANNLSREFKM-DILPAGARCAMQHMPRESRPFMGPNLYITPPGSWTQFHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRILAGGED 294
+ LP+ ++L F + ILP G+ C M + RPFMGPNLYITPP S+T FHQDG+GTVDSGH CL+G N V+MLRRL E K ALR+L G D
Sbjct: 864 KLLPQSFDDLKNNFMLPSILPGGSHCMMNALNVNGRPFMGPNLYITPPASFTHFHQDGHGTVDSGHLCLSGYNEVVMLRRLT-ERHKYHALRLLTGASD 961
BLAST of mRNA_E-fasciculatus_F_contig12341.1808.1 vs. uniprot
Match: A0A1E7FK00_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK00_9STRA) HSP 1 Score: 108 bits (269), Expect = 2.680e-25 Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 1 RYLPECANNLSREFKMD-ILPAGARCAMQHMPRESRPFMGPNLYITPPGSWTQFHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRILAG 285
R +P N F++ +LP G+ C M + E+RPFMGPNLY+TPP S+T FHQDG+GTVDSGH C++G N VIMLRRL E KR AL IL+G
Sbjct: 613 RLMPLLNENFLESFELSSVLPGGSHCMMNSVTPEARPFMGPNLYVTPPASFTHFHQDGHGTVDSGHLCISGFNEVIMLRRLT-ERHKRHALWILSG 707
BLAST of mRNA_E-fasciculatus_F_contig12341.1808.1 vs. uniprot
Match: A0A7S1ZIK7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK7_9STRA) HSP 1 Score: 107 bits (266), Expect = 6.890e-25 Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 1
Query: 1 RYLPECANNLSREFKMD-ILPAGARCAMQHMPRESRPFMGPNLYITPPGSWTQFHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRILAG 285
+ LP + +FKM LP G C M + RPFMGPN+Y+TPPGS+T FHQDG+GTVDSGHQCL+G N V+MLRRL E K+ AL++L G
Sbjct: 698 KLLPPLYEDFINKFKMPGCLPGGIHCMMNSVNAGGRPFMGPNIYLTPPGSFTHFHQDGHGTVDSGHQCLSGYNEVVMLRRLT-ERHKQHALQLLRG 792
BLAST of mRNA_E-fasciculatus_F_contig12341.1808.1 vs. uniprot
Match: A0A448ZRZ6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRZ6_9STRA) HSP 1 Score: 106 bits (265), Expect = 9.320e-25 Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = 1
Query: 1 RYLPECANNLSREFKMD-ILPAGARCAMQHMPRESRPFMGPNLYITPPGSWTQFHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRILAG 285
R +P +N F++ +LP G+ C M + E+RPFMGPNLY+TPP S+T FHQDG+GTVDSGH C++G N V+MLRRL E K+ AL IL+G
Sbjct: 636 RLVPLLNDNFLESFELPAVLPGGSHCMMNSVTPEARPFMGPNLYVTPPASFTHFHQDGHGTVDSGHLCISGYNEVVMLRRLT-ERHKKHALWILSG 730
BLAST of mRNA_E-fasciculatus_F_contig12341.1808.1 vs. uniprot
Match: B8CCF4_THAPS (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCF4_THAPS) HSP 1 Score: 106 bits (264), Expect = 1.270e-24 Identity = 53/96 (55.21%), Postives = 64/96 (66.67%), Query Frame = 1
Query: 1 RYLPECANNLSREFKMD-ILPAGARCAMQHMPRESRPFMGPNLYITPPGSWTQFHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRILAG 285
+ LP+ + R FK+ ILP G+ C M + RPFMGPNLY+TPP S+T FHQDG+GTVDSGH C G N V+MLRRL E K ALR+L G
Sbjct: 597 KLLPQTYEDFRRNFKLPGILPGGSHCMMNAVNEGGRPFMGPNLYVTPPSSFTHFHQDGHGTVDSGHHCREGYNEVVMLRRLT-ERHKHHALRLLNG 691 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12341.1808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12341.1808.1 >prot_E-fasciculatus_F_contig12341.1808.1 ID=prot_E-fasciculatus_F_contig12341.1808.1|Name=mRNA_E-fasciculatus_F_contig12341.1808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=98bp RYLPECANNLSREFKMDILPAGARCAMQHMPRESRPFMGPNLYITPPGSWback to top mRNA from alignment at E-fasciculatus_F_contig12341:1533..2062+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12341.1808.1 ID=mRNA_E-fasciculatus_F_contig12341.1808.1|Name=mRNA_E-fasciculatus_F_contig12341.1808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=530bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12341:1533..2062+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12341:1533..2062+ >mRNA_E-fasciculatus_F_contig12341.1808.1 ID=mRNA_E-fasciculatus_F_contig12341.1808.1|Name=mRNA_E-fasciculatus_F_contig12341.1808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=588bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12341:1533..2062+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |