mRNA_E-fasciculatus_F_contig1232.1789.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1232.1789.1 vs. uniprot
Match: A0A6H5KST7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST7_9PHAE) HSP 1 Score: 379 bits (974), Expect = 7.220e-124 Identity = 275/349 (78.80%), Postives = 294/349 (84.24%), Query Frame = 1
Query: 4 AVAFEDRVEELEKELSQSRRVLKRSNSVASISSISSAVSSSTDNXXXXXXXXXXXXXXXXXXXXXXXXXKLVETMTLLKDAEKAIRMARGELVGKSERCKPQVGEDAVSSCKANNTDTRARKTRGLDHQPGCNLPAAGVECGNARPLASGNEEGAGEGSTIEAMATTADKSGGXXXXXXXQDMSAKVAKMQAELDGLHAVLDNLSAERAAAALGGAAAERERERGANGVXXXXXXXXXXXXXXRVLLILSREGVSGERDAALEEPGRGGGARHGGAVDDRPT-KSNSRETTGSE-KQKQSQGEVKVLRSCHKRRDQVIKVRRESLGESEERISMAAHFGYPSCIYQPFL 1044
AV FEDRVEELEKELS+SRRVLKRSNS ASIS+I SAVSSS XXXXXXXXXXXXXXXXXXXXXXXXXKLVETMTLLKDAEKA+RMARGELVGK+ERCK QVG+DAVS C+ANNT+T T LDHQPGCN PA GVECG ARPL G EGA EGS IEAMATTADKSGG QDMSAKVAKMQ+ELDGLHAVLDNLSA+RAAAALGGAAA RER GA XXXXXXXXXXXXXX VLL+ REGVSG+R ALE+PGRGG A G AVDDRPT ++N+RET + KQKQSQGEVKVLRSCH+RRDQV + RRE GESEERISMA HFGYPSCI+QPFL
Sbjct: 320 AVPFEDRVEELEKELSESRRVLKRSNSAASISTILSAVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVETMTLLKDAEKAMRMARGELVGKNERCKQQVGKDAVSFCEANNTNT----TVALDHQPGCNAPATGVECGKARPLVGGRGEGAEEGSAIEAMATTADKSGGEGEGQG-QDMSAKVAKMQSELDGLHAVLDNLSAKRAAAALGGAAAGRER--GAXXXXXXXXXXXXXXXXXNVLLLSRREGVSGDRKDALEDPGRGGDAAQG-AVDDRPTTETNTRETAAAPGKQKQSQGEVKVLRSCHRRRDQVKRERREGRGESEERISMATHFGYPSCIFQPFL 660
BLAST of mRNA_E-fasciculatus_F_contig1232.1789.1 vs. uniprot
Match: D7FMI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI6_ECTSI) HSP 1 Score: 373 bits (958), Expect = 1.500e-122 Identity = 278/345 (80.58%), Postives = 289/345 (83.77%), Query Frame = 1
Query: 19 DRVEELEKELSQSRRVLKRSNSVASISSISSAVSSSTDNXXXXXXXXXXXXXXXXXXXXXXXXXK--LVETMTLLKDAEKAIRMARGELVGKSERCKPQVGEDAVSSCKANNTDTRARKTRGLDHQPGCNLPAAGVECGNARPLASGNEEGAGEGSTIEAMATTADKSGGXXXXXXXQDMSAKVAKMQAELDGLHAVLDNLSAERAAAALGGAAAERERERGANGVXXXXXXXXXXXXXXRVLLILSREGVSGERDAALEEPGRGGGARHGGAVDDRPTKSNSRET-TGSEKQKQSQGEVKVLRSCHKRRDQVIKVRRESLGESEERISMAAHFGYPSCIYQPFL 1044
DRVEELEKELS+SRRVLKRS+S ASIS+ SAVSS XXXXXXXXXXXXXXXXXXXXXXX K LVETMTLLKDAEKAIRMARGELVGKSERCK QVGEDAVS C+AN T+ T GLDHQPGC+ PA GVECG ARPL SG EEGAGEGS +EAMATTADKSGG XXXX QDMSAKVAKMQAELDGLHAVLDNLSAERAAAALGGA A XXXXXXXXXXXXXX+VLLIL REGVSGERDAALE+PG GGGA G A +DRPTK +RET TGS KQKQSQGEVKVLRSCHKRRDQV RRE GESEERISMAAHFGYPSCIYQPFL
Sbjct: 237 DRVEELEKELSESRRVLKRSDSAASISTALSAVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXKHKDKLVETMTLLKDAEKAIRMARGELVGKSERCKQQVGEDAVSFCEANITNA----TGGLDHQPGCSAPATGVECGKARPLVSGLEEGAGEGSAMEAMATTADKSGGEGXXXX-QDMSAKVAKMQAELDGLHAVLDNLSAERAAAALGGAVAXXXXXX--XXXXXXXXXXXXXXXXXKVLLILRREGVSGERDAALEDPGPGGGAAQG-AFNDRPTKGYARETATGSGKQKQSQGEVKVLRSCHKRRDQVRPERREGRGESEERISMAAHFGYPSCIYQPFL 573
BLAST of mRNA_E-fasciculatus_F_contig1232.1789.1 vs. uniprot
Match: D8LMT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT9_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 3.090e-9 Identity = 60/146 (41.10%), Postives = 78/146 (53.42%), Query Frame = 1
Query: 211 KLVETMTLLKDAEKAIRMARGELVGKSERCKPQVGEDAVSSCKANNTDTRARKTRGLDHQPGCNLPAAGVECGNARPLASGNEEGAGEGSTIEAMATTADKSGGXXXXXXXQDMSAKVAKMQAELDGLHAVLDNLSAERAAAALGG 648
+L+E M+LLK+AE A + A+ EL GK E+ + + SS + T T GL H G E G AR L E G A A A+ +GG +D+SAKVA +QAELD +HA+LDN+SAER AA LGG
Sbjct: 472 QLLEMMSLLKEAEAAKQAAQDELAGKDEKIEELEAKVLASSTSSPPNGTA--NTGGLHHDSGYT-----AEGGAARSLVGDGEAEGG------AAAAEAEANGG-------EDLSAKVATLQAELDDMHAMLDNVSAERDAA-LGG 596 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1232.1789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1232.1789.1 >prot_E-fasciculatus_F_contig1232.1789.1 ID=prot_E-fasciculatus_F_contig1232.1789.1|Name=mRNA_E-fasciculatus_F_contig1232.1789.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=349bp QAVAFEDRVEELEKELSQSRRVLKRSNSVASISSISSAVSSSTDNDGGEGback to top mRNA from alignment at E-fasciculatus_F_contig1232:562..5567+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1232.1789.1 ID=mRNA_E-fasciculatus_F_contig1232.1789.1|Name=mRNA_E-fasciculatus_F_contig1232.1789.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5006bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1232:562..5567+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1232:562..5567+ >mRNA_E-fasciculatus_F_contig1232.1789.1 ID=mRNA_E-fasciculatus_F_contig1232.1789.1|Name=mRNA_E-fasciculatus_F_contig1232.1789.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2094bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1232:562..5567+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |