mRNA_E-fasciculatus_F_contig12298.1769.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12298.1769.1
Unique NamemRNA_E-fasciculatus_F_contig12298.1769.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12298.1769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12298contigE-fasciculatus_F_contig12298:1944..2674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size643
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12298.1769.1prot_E-fasciculatus_F_contig12298.1769.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12298 2095..2674 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927736.4078226-UTR-E-fasciculatus_F_contig12298:1943..20941622927736.4078226-UTR-E-fasciculatus_F_contig12298:1943..2094Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12298 1944..2094 +
1695995672.269907-UTR-E-fasciculatus_F_contig12298:1943..20941695995672.269907-UTR-E-fasciculatus_F_contig12298:1943..2094Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12298 1944..2094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927736.4207911-CDS-E-fasciculatus_F_contig12298:2094..23441622927736.4207911-CDS-E-fasciculatus_F_contig12298:2094..2344Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12298 2095..2344 +
1695995672.2789185-CDS-E-fasciculatus_F_contig12298:2094..23441695995672.2789185-CDS-E-fasciculatus_F_contig12298:2094..2344Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12298 2095..2344 +
1622927736.4309223-CDS-E-fasciculatus_F_contig12298:2432..26741622927736.4309223-CDS-E-fasciculatus_F_contig12298:2432..2674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12298 2433..2674 +
1695995672.288223-CDS-E-fasciculatus_F_contig12298:2432..26741695995672.288223-CDS-E-fasciculatus_F_contig12298:2432..2674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12298 2433..2674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12298.1769.1

>prot_E-fasciculatus_F_contig12298.1769.1 ID=prot_E-fasciculatus_F_contig12298.1769.1|Name=mRNA_E-fasciculatus_F_contig12298.1769.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=164bp
MEKKRTGLARFLFRYLLTASYRGSPTCTGEWRRKGELEGRCQRREMKKCQ
RKRGCGGMDGAGFTETGEEETYGRRERDGNNSVGILVKMLARTVLQRTLG
RRYITHNAAAMVDTNRYNFLRLLYFTVSVFSPERSAVSLICRPMGSQMVT
FNSVPYVRQLLTFQ
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mRNA from alignment at E-fasciculatus_F_contig12298:1944..2674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12298.1769.1 ID=mRNA_E-fasciculatus_F_contig12298.1769.1|Name=mRNA_E-fasciculatus_F_contig12298.1769.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=731bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12298:1944..2674+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGACCTTTTACACCGACAAGAGTCGGAGATGGTTTACGTTGAGCTGGC
CTAGCCCGTTTCCAATTAGTTCAAACTCGTTACGTCTCTGAACGCCAGGA
ATTATGATGGACCACATCCCAACACAGTCAGTTGGTTGAGATTGCAATTT
AATGGAAAAGAAACGGACGGGTTTGGCTAGATTTTTGTTCCGATATTTAT
TGACTGCTTCTTATCGGGGATCTCCAACATGCACGGGGGAATGGAGGAGG
AAGGGAGAACTCGAAGGAAGGTGCCAACGAAGAGAGATGAAAAAGTGCCA
GCGAAAGAGAGGATGTGGTGGCATGGACGGGGCAGGTTTTACGGAAACGG
GAGAGGAGGAAACATATGGAAGAAGGGAGAGGGATGGAAATAACAGCGTG
GGAGGAGGATTCGGCATGGGAAAGAGCAAGAGCGTTGACCCGGATGACCG
TCCGCACAACAAACGCCGGAGGCATACAGAGCTGACCAAGGATATTGGTA
AAAATGCTTGCGAGGACGGTACTGCAGCGCACGCTAGGAAGAAGATACAT
TACACACAATGCAGCAGCCATGGTAGACACTAACCGGTACAATTTTCTTC
GATTGCTTTATTTTACCGTTTCTGTTTTTAGTCCAGAGAGAAGCGCAGTC
TCCCTCATATGCCGCCCCATGGGGTCCCAGATGGTGACCTTTAATTCTGT
GCCGTATGTCCGACAACTCCTCACTTTCCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12298:1944..2674+

>mRNA_E-fasciculatus_F_contig12298.1769.1 ID=mRNA_E-fasciculatus_F_contig12298.1769.1|Name=mRNA_E-fasciculatus_F_contig12298.1769.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12298:1944..2674+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAAAGAAACGGACGGGTTTGGCTAGATTTTTGTTCCGATATTTATT
GACTGCTTCTTATCGGGGATCTCCAACATGCACGGGGGAATGGAGGAGGA
AGGGAGAACTCGAAGGAAGGTGCCAACGAAGAGAGATGAAAAAGTGCCAG
CGAAAGAGAGGATGTGGTGGCATGGACGGGGCAGGTTTTACGGAAACGGG
AGAGGAGGAAACATATGGAAGAAGGGAGAGGGATGGAAATAACAGCGTGG
ATGGAAAAGAAACGGACGGGTTTGGCTAGATTTTTGTTCCGATATTTATT
GACTGCTTCTTATCGGGGATCTCCAACATGCACGGGGGAATGGAGGAGGA
AGGGAGAACTCGAAGGAAGGTGCCAACGAAGAGAGATGAAAAAGTGCCAG
CGAAAGAGAGGATGTGGTGGCATGGACGGGGCAGGTTTTACGGAAACGGG
AGAGGAGGAAACATATGGAAGAAGGGAGAGGGATGGAAATAACAGCGTGG
GGATATTGGTAAAAATGCTTGCGAGGACGGTACTGCAGCGCACGCTAGGA
AGAAGATACATTACACACAATGCAGCAGCCATGGTAGACACTAACCGGTA
CAATTTTCTTCGATTGCTTTATTTTACCGTTTCTGTTTTTAGTCCAGAGA
GAAGCGCAGTCTCCCTCATATGCCGCCCCATGGGGTCCCAGATGGTGACC
TTTAATTCTGTGCCGTATGTCCGACAACTCCTCACTTTCCAGGGATATTG
GTAAAAATGCTTGCGAGGACGGTACTGCAGCGCACGCTAGGAAGAAGATA
CATTACACACAATGCAGCAGCCATGGTAGACACTAACCGGTACAATTTTC
TTCGATTGCTTTATTTTACCGTTTCTGTTTTTAGTCCAGAGAGAAGCGCA
GTCTCCCTCATATGCCGCCCCATGGGGTCCCAGATGGTGACCTTTAATTC
TGTGCCGTATGTCCGACAACTCCTCACTTTCCAG
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