mRNA_E-fasciculatus_F_contig12283.1764.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12283.1764.1
Unique NamemRNA_E-fasciculatus_F_contig12283.1764.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12283.1764.1 vs. uniprot
Match: D8LDG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.810e-15
Identity = 83/151 (54.97%), Postives = 89/151 (58.94%), Query Frame = 2 
Query:    2 DVVGGGLSTVVPTGGWAM------NTTGKTMLS---GAVLAGKGSVIPSRRLGSSKRGEARPVGGGG---RSSGWMRRGRRPELEATSSRDVAHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGRALLSARNTPIIFLQKGVVPA 418
            DVVGGG S++V              T GKTM+S    A+LA  GSVIPSRR  SS+ GEA P G G    RSSGW+ R RRPELEA SSR  A  XXXXXXXXXXXXXXXXX                 G  LLSA   P IFLQKGVVPA
Sbjct:    2 DVVGGGPSSIVTXXXXXXXXXXXXTTAGKTMISVPKNAILAENGSVIPSRRSRSSRPGEASPAGVGNQVRRSSGWVLRCRRPELEAKSSRANAKNXXXXXXXXXXXXXXXXXSLKSTAATAEE-----AGTVLLSAWKKPFIFLQKGVVPA 147
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12283.1764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDG2_ECTSI1.810e-1554.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12283contigE-fasciculatus_F_contig12283:610..1952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927735.1777542-CDS-E-fasciculatus_F_contig12283:610..8101622927735.1777542-CDS-E-fasciculatus_F_contig12283:610..810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12283 611..810 -
1695995671.9940484-CDS-E-fasciculatus_F_contig12283:610..8101695995671.9940484-CDS-E-fasciculatus_F_contig12283:610..810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12283 611..810 -
1622927735.1934884-CDS-E-fasciculatus_F_contig12283:1732..19521622927735.1934884-CDS-E-fasciculatus_F_contig12283:1732..1952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12283 1733..1952 -
1695995672.0064204-CDS-E-fasciculatus_F_contig12283:1732..19521695995672.0064204-CDS-E-fasciculatus_F_contig12283:1732..1952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12283 1733..1952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12283.1764.1prot_E-fasciculatus_F_contig12283.1764.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12283 611..1952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12283.1764.1

>prot_E-fasciculatus_F_contig12283.1764.1 ID=prot_E-fasciculatus_F_contig12283.1764.1|Name=mRNA_E-fasciculatus_F_contig12283.1764.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=140bp
RRGGWRPVYGSSDGWMGDEYYWENHAFGRGLGRKGERYPFETFGEFKARR
SAPGGGGGSVIRLDAEGQTSGVGGDIFTGRRPHHHQQQQRQQQRQQVLPS
QLQHQHPQDDSRDHGGSGKGSSFSAEHADYFPSERSCSGR
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mRNA from alignment at E-fasciculatus_F_contig12283:610..1952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12283.1764.1 ID=mRNA_E-fasciculatus_F_contig12283.1764.1|Name=mRNA_E-fasciculatus_F_contig12283.1764.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1343bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12283:610..1952- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGACGTGGTGGGTGGAGGCCTGTCTACGGTAGTTCCGACGGGTGGATGGG
CGATGAATACTACTGGGAAAACCATGCTTTCGGGCGCGGTCTTGGCCGGA
AAGGGGAGCGTTATCCCTTCGAGACGTTTGGGGAGTTCAAAGCGAGGAGA
AGCGCGCCCGGTGGGGGGGGGGGGTCGGTCATCAGGCTGGATGCGGAGGG
GCAGACGTCCGGAGTTGGAGGTGCGTTCGAGGCTGACGTGACAAGTACCG
TGTACAAGTAGGCGTCTTGCAGAAATGTTCATAGTGCGGAGAATCTCGAC
AAGATTTGTTGTGTTGTTCCATGACATTCAACGTCGACGTTTAGTTTAAG
AGTTTGAACATAAGAACAGGTGCTCTGCCTCGCTTCTACACCAGGGCGGG
AGGCCTCAGCTGGTTTCCTATCCCACACATACATGTACGTACAATCTGTG
GGCGCCCCGTCTGTTCCGACGATAGAATCGAAGTTTGAAAGGGAAATCTC
AACCTTTGTGAGGGTGTTTCGAAGCGTAAGGTTTCTTACAGTGTTCTCGA
GGAACACTTTGGGCGTTCAAACTATGTCTCCAACGTACACTCACAGGTGG
ACCTCAAGCGGTGGGTACCCCCCCCCTCCCGTCTCGGGGTCAGATACTAC
CTTGACCGCACGGAGCTTGTTTAGGAACGCCAAAATATTTAGCGAAAGCC
GCCAACGGTTGGTGTGTTCCCTCATAACGTTGAGCTCTCGTATGCCTAGA
TAGCCCCCATACCACGTTCGTCGTTATCGTTACAAGCAAGGCAGCTTTTT
CGTTCTTGTTGGTAGTTTGCATCTCCTCGCCATCTCACTCCATGGTATCC
CACGAAAAACACCGTCCCCGTCCCGAGGCACAACTACTGTAGTTTCACGA
CGATGATCCCCTTAGCATGAACCCAGGTTGGTTTCAAAAATAAAGAGCTA
TTACAGTTTGTAGTACTACCAATCCGTGCGAACATAGTAGAATGTAGAAG
CAAACACACACCTAGACTATCCATTTGGAGAGACGAGCTACCTACCAGCA
TCGGGTCGAAAACAAGACGAACAACTTGGCCCCCTTGCCTGCGACGCCGT
CGACTCATCGCCACGCCTGCCTGTCTGTCTGTCTGTCTTCAGGCGACATC
TTCACGGGACGTCGCCCACACCACCACCAACAACAACAACGACAACAACA
ACGACAACAGGTGCTGCCGTCGCAGCTGCAGCACCAGCATCCTCAAGACG
ACAGCCGCGACCACGGCGGCAGTGGGAAGGGCTCTTCTTTCAGCGCGGAA
CACGCCGATTATTTTCCTTCAGAAAGGAGTTGTTCCGGCCGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12283:610..1952-

>mRNA_E-fasciculatus_F_contig12283.1764.1 ID=mRNA_E-fasciculatus_F_contig12283.1764.1|Name=mRNA_E-fasciculatus_F_contig12283.1764.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12283:610..1952- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGACGTGGTGGGTGGAGGCCTGTCTACGGTAGTTCCGACGGGTGGATGGG
CGATGAATACTACTGGGAAAACCATGCTTTCGGGCGCGGTCTTGGCCGGA
AAGGGGAGCGTTATCCCTTCGAGACGTTTGGGGAGTTCAAAGCGAGGAGA
AGCGCGCCCGGTGGGGGGGGGGGGTCGGTCATCAGGCTGGATGCGGAGGG
GCAGACGTCCGGAGTTGGAGAGACGTGGTGGGTGGAGGCCTGTCTACGGT
AGTTCCGACGGGTGGATGGGCGATGAATACTACTGGGAAAACCATGCTTT
CGGGCGCGGTCTTGGCCGGAAAGGGGAGCGTTATCCCTTCGAGACGTTTG
GGGAGTTCAAAGCGAGGAGAAGCGCGCCCGGTGGGGGGGGGGGGTCGGTC
ATCAGGCTGGATGCGGAGGGGCAGACGTCCGGAGTTGGAGGCGACATCTT
CACGGGACGTCGCCCACACCACCACCAACAACAACAACGACAACAACAAC
GACAACAGGTGCTGCCGTCGCAGCTGCAGCACCAGCATCCTCAAGACGAC
AGCCGCGACCACGGCGGCAGTGGGAAGGGCTCTTCTTTCAGCGCGGAACA
CGCCGATTATTTTCCTTCAGAAAGGAGTTGTTCCGGCCGGGCGACATCTT
CACGGGACGTCGCCCACACCACCACCAACAACAACAACGACAACAACAAC
GACAACAGGTGCTGCCGTCGCAGCTGCAGCACCAGCATCCTCAAGACGAC
AGCCGCGACCACGGCGGCAGTGGGAAGGGCTCTTCTTTCAGCGCGGAACA
CGCCGATTATTTTCCTTCAGAAAGGAGTTGTTCCGGCCGG
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