mRNA_E-fasciculatus_F_contig1228.1758.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1228.1758.1
Unique NamemRNA_E-fasciculatus_F_contig1228.1758.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1228.1758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1228contigE-fasciculatus_F_contig1228:776..1705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size306
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1228.1758.1prot_E-fasciculatus_F_contig1228.1758.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1228 776..1704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927734.7207391-CDS-E-fasciculatus_F_contig1228:775..7971622927734.7207391-CDS-E-fasciculatus_F_contig1228:775..797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 776..797 +
1695995671.755607-CDS-E-fasciculatus_F_contig1228:775..7971695995671.755607-CDS-E-fasciculatus_F_contig1228:775..797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 776..797 +
1622927734.734778-CDS-E-fasciculatus_F_contig1228:1101..11511622927734.734778-CDS-E-fasciculatus_F_contig1228:1101..1151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 1102..1151 +
1695995671.7699172-CDS-E-fasciculatus_F_contig1228:1101..11511695995671.7699172-CDS-E-fasciculatus_F_contig1228:1101..1151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 1102..1151 +
1622927734.74681-CDS-E-fasciculatus_F_contig1228:1285..13801622927734.74681-CDS-E-fasciculatus_F_contig1228:1285..1380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 1286..1380 +
1695995671.7848628-CDS-E-fasciculatus_F_contig1228:1285..13801695995671.7848628-CDS-E-fasciculatus_F_contig1228:1285..1380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 1286..1380 +
1622927734.7576966-CDS-E-fasciculatus_F_contig1228:1568..17041622927734.7576966-CDS-E-fasciculatus_F_contig1228:1568..1704Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 1569..1704 +
1695995671.7953413-CDS-E-fasciculatus_F_contig1228:1568..17041695995671.7953413-CDS-E-fasciculatus_F_contig1228:1568..1704Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 1569..1704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1228.1758.1

>prot_E-fasciculatus_F_contig1228.1758.1 ID=prot_E-fasciculatus_F_contig1228.1758.1|Name=mRNA_E-fasciculatus_F_contig1228.1758.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
RKRPSTHEKGASHDQSQPARGESLEGIEEQDLLEFLHGVRLHVGHLTFEE
IHARLRQVSGGAVTATKEELYRHLETKLAKYEQWNDEFGDMIAKSRAADS
V
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mRNA from alignment at E-fasciculatus_F_contig1228:776..1705+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1228.1758.1 ID=mRNA_E-fasciculatus_F_contig1228.1758.1|Name=mRNA_E-fasciculatus_F_contig1228.1758.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=930bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1228:776..1705+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAAAGAGGCCCTCGACCCATGGTGAACACATTTTCATGATGAAGGTGGT
ACTTTGCTTGGGGGTTATCTTTGTTTCGACTTCCCGCGGTGTTTTTAGCA
GTACTATCATTTGTGTCGGCTGCACTACAATGATCCAGTCCTCACAGAAT
GGGTTCTACCCACGATGATATAGTTTTACATTTAGGGCGCCGTAAGAACA
TCGACTTCAATCGTTGTAGGTGCATGGGCTGATCTCATATAGGAACTTCC
AACATACTAGTCTAATTAACAAGGGTTTCGTCCGCACGACATGCCCGATC
GTATTTCGACCAACCGACACTTACAGAGAAGGGAGCATCACATGACCAGA
GCCAACCAGCACGAGGAGAGAGTCTGGTGAGCACCCGTGAATCGTATTAG
AACTACGGCAGGCTCTGTATTTTAGTATTGGTCTGACACGCCCGAATCTT
TGCCGGGAAGAGTACCCAACGCTACCGTTATACCATCGCCGTCGATCACC
AAACCTGCAGGAGGGTATCGAAGAACAAGATTTGCTGGAGTTTCTCCACG
GTGTTCGCCTTCATGTAGGACACCTGACATTCGAGGAAATCCATGCTCGG
TTAAGGTGAGCACTACCTTCACCCTTTGGCTCGTAACGTGGCTGTGCAGC
CTCTTGACTGGCGAGGCTGTAGCCAAGAGCGTACCGGAATGGTGAAAACA
TGAGTATCATGGTCAGCACACTCAGTCACCATTAAACTCTGACATTGCTT
GTTTGACCCTTACATGTCGAAAACTGTTGCCTGTGATCGGCAGACAAGTG
TCAGGTGGGGCGGTCACCGCGACGAAAGAAGAACTATACAGGCACTTGGA
GACGAAACTGGCCAAGTATGAGCAATGGAACGACGAATTCGGAGATATGA
TAGCTAAAAGCCGCGCCGCGGACAGCGTGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1228:776..1705+

>mRNA_E-fasciculatus_F_contig1228.1758.1 ID=mRNA_E-fasciculatus_F_contig1228.1758.1|Name=mRNA_E-fasciculatus_F_contig1228.1758.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1228:776..1705+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAAAGAGGCCCTCGACCCATGAGAAAGAGGCCCTCGACCCATGAGAAGG
GAGCATCACATGACCAGAGCCAACCAGCACGAGGAGAGAGTCTGAGAAGG
GAGCATCACATGACCAGAGCCAACCAGCACGAGGAGAGAGTCTGGAGGGT
ATCGAAGAACAAGATTTGCTGGAGTTTCTCCACGGTGTTCGCCTTCATGT
AGGACACCTGACATTCGAGGAAATCCATGCTCGGTTAAGGAGGGTATCGA
AGAACAAGATTTGCTGGAGTTTCTCCACGGTGTTCGCCTTCATGTAGGAC
ACCTGACATTCGAGGAAATCCATGCTCGGTTAAGACAAGTGTCAGGTGGG
GCGGTCACCGCGACGAAAGAAGAACTATACAGGCACTTGGAGACGAAACT
GGCCAAGTATGAGCAATGGAACGACGAATTCGGAGATATGATAGCTAAAA
GCCGCGCCGCGGACAGCGTGACAAGTGTCAGGTGGGGCGGTCACCGCGAC
GAAAGAAGAACTATACAGGCACTTGGAGACGAAACTGGCCAAGTATGAGC
AATGGAACGACGAATTCGGAGATATGATAGCTAAAAGCCGCGCCGCGGAC
AGCGTG
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