mRNA_E-fasciculatus_F_contig12253.1744.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12253.1744.1
Unique NamemRNA_E-fasciculatus_F_contig12253.1744.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12253.1744.1 vs. uniprot
Match: D7G287_ECTSI (Putative serine esterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G287_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 1.520e-115
Identity = 220/283 (77.74%), Postives = 229/283 (80.92%), Query Frame = 1 
Query:    1 GKTGHDLFLSRRKSGGGEVXXXXXXXXXXX-----AKDGRENSLLYNMATTEDFLRPLKAFRWRRAYANRRGDFMVPYGTAAFVESDEGDGSEPSPSDRDGAKTGAEEE--QDVSESD-VVSRGVSSPPPDGATAVLAAGTGSFTFADRLLGARNAALVGVSRVSAEGAAARNGGGDSDAGGAVPDGTLDGAGAAKKEEVHAGKSMEEEMAAGLNSCGWEKVSVDFGGLAPFSHNKICALSRTTITTALYGSGRSVVDHAAAFLVAHDREASDDDD-DRGNSS 822
            GKTGHDLFLSR+K G    XXXXXXXXXXX     AKDGRENSLLYNMATT+DFLRPLKAFRWRRAYANRRGDFMVPYGTAAFVE DEGDGS+ SPS RDGAKTG EEE  QDVSESD VVSRGVSSP PDGA A LA GT SFTFADRLLGA+NAA+VGVSRVSA G         +D+      G  D AGAAKKEE    KSMEEEMAAGLNSCGWEKVSVDFGG+APFSHNKICALSRT ITTALYGSGRSVVDHAAAFLV  DRE +D    DRGN S
Sbjct:  209 GKTGHDLFLSRKKGGXXXXXXXXXXXXXXXXXXXXAKDGRENSLLYNMATTKDFLRPLKAFRWRRAYANRRGDFMVPYGTAAFVEPDEGDGSDASPSGRDGAKTGEEEEXEQDVSESDAVVSRGVSSP-PDGAAAALADGTESFTFADRLLGAKNAAIVGVSRVSAAGXXXXXXXXRTDS----DSGVGDRAGAAKKEEALTRKSMEEEMAAGLNSCGWEKVSVDFGGVAPFSHNKICALSRTAITTALYGSGRSVVDHAAAFLVKRDRETNDXXXXDRGNPS 486
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12253.1744.1 vs. uniprot
Match: A0A6H5LMX6_9PHAE (DUF676 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMX6_9PHAE)

HSP 1 Score: 345 bits (886), Expect = 8.490e-114
Identity = 216/269 (80.30%), Postives = 223/269 (82.90%), Query Frame = 1 
Query:    1 GKTGHDLFLSRRKSGGGEVXXXXXXXXXXX----AKDGRENSLLYNMATTEDFLRPLKAFRWRRAYANRRGDFMVPYGTAAFVESDEGDGSEPSPSDRDGAKTGAEE-EQDVSESD-VVSRGVSSPPPDGATAVLAAGTGSFTFADRLLGARNAALVGVSRVSAEGAAARNGG-GDSDAGGAVPDGTLDGAGAAKKEEVHAGKSMEEEMAAGLNSCGWEKVSVDFGGLAPFSHNKICALSRTTITTALYGSGRSVVDHAAAFLVAHDRE 786
            GKTGHDLFLSR+K G    XXXXXXXXXXX    AKDGRENSLLYNMATTEDFLRPLKAFRWRRAYANRRGDFMVPYGTAAFVE DEGDGS+ SPS RD AKTG EE EQDVSESD VVSRGVSSP PDGA A LAAGT SFTFADR LGA+NAA+VGVSRV A GAA       D+D+G        D AG A KEE HA KSMEEEMAAGLNSCGWEKVSVDFGG+APFSHNKICALSRT ITTALYGSGRSVVDHAAAFLV  DRE
Sbjct:  241 GKTGHDLFLSRKKVGXXXXXXXXXXXXXXXXXXAAKDGRENSLLYNMATTEDFLRPLKAFRWRRAYANRRGDFMVPYGTAAFVEPDEGDGSDASPSGRDDAKTGEEEQEQDVSESDAVVSRGVSSP-PDGAAASLAAGTESFTFADRWLGAKNAAIVGVSRVPAAGAAXXXXXRSDTDSG------MGDRAGGANKEEAHARKSMEEEMAAGLNSCGWEKVSVDFGGVAPFSHNKICALSRTAITTALYGSGRSVVDHAAAFLVKRDRE 502
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12253.1744.1 vs. uniprot
Match: A0A7S3XVN6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVN6_HETAK)

HSP 1 Score: 101 bits (252), Expect = 7.040e-22
Identity = 89/279 (31.90%), Postives = 114/279 (40.86%), Query Frame = 1 
Query:    1 GKTGHDLFLSRRKSGGGEVXXXXXXXXXXXAKDGRENSLLYNMATTEDFLRPLKAFRWRRAYANRRGDFMVPYGTAAFVESDEGDGSEPSPSDRDGAKTGAEEEQDVSESDVVSRGVSSPPPDGATAVLAAGTGSFTFADRLLGARNAALVGVSRVSAEGAAARNGGGDSDAGGAVPDGTLDGAGAAKKEEV-------------------HAGKSMEEEMAAGLNSCGWEKVSVDFGGLAPFSHNKICALSRTTITTALYGSGRSVVDHAAAFLVAHD 780
            G+TG DLFL                     A       LL  MAT+  +L PL  F+ RRAYAN +GDFMVP+GTA+F          P P+    A   A       E           P         +G   F             +V   R ++     RN                DGAG   KE V                     GK++EE MA  L+S GW KV VDFGG+ PFSHN ICALSR  IT  ++ +G+ V+DHAA ++++ D
Sbjct:   39 GRTGEDLFLR-----------------DAAAAAAARPPLLLEMATSPAYLEPLALFQRRRAYANVQGDFMVPFGTASFA---------PDPA----AFAAAASAPTTQEGPXXXXXXXXXPVASVGGRAFSGFRRFGHFAPFGRGNKEKVVWEYRTASASKYGRN---------------ADGAGRFSKEIVKERANFWDQQHDPSTSSIERGGKTIEETMAKSLDSVGWSKVGVDFGGIIPFSHNMICALSRNPITEKVFEAGKPVMDHAAQYILSED 272
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12253.1744.1 vs. uniprot
Match: L1J7J1_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J7J1_GUITC)

HSP 1 Score: 62.4 bits (150), Expect = 2.560e-7
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:    1 GKTGHDLFLSRRKSGGGEVXXXXXXXXXXXAKDGRENSLLYNMATTEDFLRPLKAFRWRRAYANRRGDFMVPYGTAAFVESD 246
            G+TG DLF+                      K+G E  LL  M+T E FLR L++F  RRAYAN  GDF+VP+GTAAF+  D
Sbjct:  303 GRTGDDLFM--------------------LGKEGDEPPLLLLMSTCEVFLRGLRSFSRRRAYANLEGDFLVPFGTAAFMVED 364
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12253.1744.1 vs. uniprot
Match: A0A7S0F5S5_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F5S5_9CRYP)

HSP 1 Score: 53.9 bits (128), Expect = 2.480e-5
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  127 MATTEDFLRPLKAFRWRRAYANRRGDFMVPYGTAAFVESD 246
            M+T E FLR L++F  RRAYAN  GDF+VP+GTAAF+  D
Sbjct:    1 MSTCEVFLRGLRSFTRRRAYANLEGDFLVPFGTAAFMVED 40
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12253.1744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G287_ECTSI1.520e-11577.74Putative serine esterase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5LMX6_9PHAE8.490e-11480.30DUF676 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3XVN6_HETAK7.040e-2231.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1J7J1_GUITC2.560e-743.90Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0F5S5_9CRYP2.480e-562.50Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12253contigE-fasciculatus_F_contig12253:2520..4093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.3
Seed ortholog evalue4.1e-94
Seed eggNOG ortholog2880.D7G287
KEGG koko:K02737
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
EggNOG free text desc.acylglycerol lipase activity
EggNOG OGsKOG4372@1,KOG4372@2759
EC3.4.25.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative serine esterase
Ec32 orthologEc-16_002070.1
Exons3
Model size825
Cds size825
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12253.1744.1prot_E-fasciculatus_F_contig12253.1744.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12253 2520..4093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927733.289078-CDS-E-fasciculatus_F_contig12253:2519..27051622927733.289078-CDS-E-fasciculatus_F_contig12253:2519..2705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12253 2520..2705 -
1695995670.957891-CDS-E-fasciculatus_F_contig12253:2519..27051695995670.957891-CDS-E-fasciculatus_F_contig12253:2519..2705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12253 2520..2705 -
1622927733.306814-CDS-E-fasciculatus_F_contig12253:3403..35231622927733.306814-CDS-E-fasciculatus_F_contig12253:3403..3523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12253 3404..3523 -
1695995670.971714-CDS-E-fasciculatus_F_contig12253:3403..35231695995670.971714-CDS-E-fasciculatus_F_contig12253:3403..3523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12253 3404..3523 -
1622927733.3244238-CDS-E-fasciculatus_F_contig12253:3574..40931622927733.3244238-CDS-E-fasciculatus_F_contig12253:3574..4093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12253 3575..4093 -
1695995670.9798894-CDS-E-fasciculatus_F_contig12253:3574..40931695995670.9798894-CDS-E-fasciculatus_F_contig12253:3574..4093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12253 3575..4093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12253.1744.1

>prot_E-fasciculatus_F_contig12253.1744.1 ID=prot_E-fasciculatus_F_contig12253.1744.1|Name=mRNA_E-fasciculatus_F_contig12253.1744.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=275bp
GKTGHDLFLSRRKSGGGEVGGEARAAAAAAAKDGRENSLLYNMATTEDFL
RPLKAFRWRRAYANRRGDFMVPYGTAAFVESDEGDGSEPSPSDRDGAKTG
AEEEQDVSESDVVSRGVSSPPPDGATAVLAAGTGSFTFADRLLGARNAAL
VGVSRVSAEGAAARNGGGDSDAGGAVPDGTLDGAGAAKKEEVHAGKSMEE
EMAAGLNSCGWEKVSVDFGGLAPFSHNKICALSRTTITTALYGSGRSVVD
HAAAFLVAHDREASDDDDDRGNSS*
back to top

mRNA from alignment at E-fasciculatus_F_contig12253:2520..4093-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12253.1744.1 ID=mRNA_E-fasciculatus_F_contig12253.1744.1|Name=mRNA_E-fasciculatus_F_contig12253.1744.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1574bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12253:2520..4093- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAAGACCGGCCACGACCTCTTCCTCAGCAGAAGGAAAAGCGGCGGCGG
CGAGGTAGGGGGCGAGGCTCGCGCGGCGGCGGCAGCGGCGGCGAAGGACG
GCCGGGAAAACTCCCTCCTGTACAACATGGCCACGACCGAAGACTTCCTG
CGGCCGCTGAAGGCCTTCCGGTGGCGGCGGGCCTACGCGAACCGCCGCGG
GGACTTCATGGTGCCGTACGGAACCGCGGCGTTCGTCGAGTCCGACGAAG
GGGACGGCTCCGAGCCATCCCCTTCAGACCGAGATGGCGCCAAGACGGGG
GCGGAGGAGGAGCAGGACGTGTCCGAAAGCGACGTCGTCTCGCGAGGCGT
GTCGTCGCCACCACCGGATGGCGCCACGGCCGTCCTTGCTGCCGGAACGG
GGTCGTTTACCTTCGCGGATCGCTTGCTGGGCGCGAGGAACGCGGCGCTC
GTCGGGGTGTCGCGCGTTTCCGCAGAGGGGGCGGCGGCAAGGAACGGCGG
CGGCGACAGCGACGCAGGAGTGGGAGGCTCTGGGTCGACGGCGGCGACGA
ACGCACCGGCAGCGGCGGAGGGCGCGGTACCTGATGGGACGCTAGACGGG
GCTGGCGCTGCAAAGAAGGAGGAGGTGCACGCGGGAAAGAGCATGGAGGA
GGAGATGGCCGCCGGGCTGAACTCGTGCGGGTGGGAGAAGGTGAGTTTTT
TTTTTTACGTTGGTTTTCTCGGAGGAGTCCTGCTGAAAGGAAAGGGAGGA
GGGGCGATGCGGCGGAGAGCTTTTGGTAGCATGATCCCAACCCCCAACCA
TATCACGAAACTACTCATAACAACCAATAGTAGTACTTGCGTGATGATGG
TCCGTTGTCTGCGTGAATGCCGCTTTGAGTCCCTCACAAGAGATATTTAC
AAACGTTGTTCGGTCTTTCTCTCTCTCTGAAACGTGCTTTTTTGCTTACA
TGTAGTTTCACCCACCTTTTTTCGGTTCCGTGCGAGTGAGTGAGCGTTCT
CGAGCTTTCATCATCATGCCATGGGTGCGCCCTCCTATTTGGGGCAAAAA
CCAACTCAACTCCACTCCCTGTATTTCGTCGCGAAGCAAAAAGAATGCTT
TCATTTCTCTTCCGAGCGCAGCGCCTAGGTAAAGTGAGCCTTTTGGTTGT
TGCCGGGACATGTACGTCCGGGACTATTTTTCGCCGGAGGACGTACGTAT
GACGTTGCTTCAGAATTTATTTCTTGGGTTGCGAGGTAGAGCAGGCTTAC
GAAGGGTAAAAAAATGTCTGCCCGCGCATGTGTATCTTGGGAACCGGCAG
GCGGGCGCGTGAGCCTATCGACCACACCTTCCCCCCACCGTTCGATGCTC
TGTACCGATATCCCATGTCATGGGGGCACGACGAGCAGGTGTCGGTGGAT
TTCGGCGGGCTCGCTCCCTTCTCCCACAACAAGATCTGCGCACTGTCCAG
GACCACCATCACGACCGCCTTGTACGGCTCCGGAAGATCGGTCGTCGACC
ACGCCGCTGCCTTCTTGGTGGCGCACGACCGTGAGGCTAGCGACGACGAC
GACGATCGAGGCAATTCTTCTTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12253:2520..4093-

>mRNA_E-fasciculatus_F_contig12253.1744.1 ID=mRNA_E-fasciculatus_F_contig12253.1744.1|Name=mRNA_E-fasciculatus_F_contig12253.1744.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1650bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12253:2520..4093- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAAGACCGGCCACGACCTCTTCCTCAGCAGAAGGAAAAGCGGCGGCGG
CGAGGTAGGGGGCGAGGCTCGCGCGGCGGCGGCAGCGGCGGCGAAGGACG
GCCGGGAAAACTCCCTCCTGTACAACATGGCCACGACCGAAGACTTCCTG
CGGCCGCTGAAGGCCTTCCGGTGGCGGCGGGCCTACGCGAACCGCCGCGG
GGACTTCATGGTGCCGTACGGAACCGCGGCGTTCGTCGAGTCCGACGAAG
GGGACGGCTCCGAGCCATCCCCTTCAGACCGAGATGGCGCCAAGACGGGG
GCGGAGGAGGAGCAGGACGTGTCCGAAAGCGACGTCGTCTCGCGAGGCGT
GTCGTCGCCACCACCGGATGGCGCCACGGCCGTCCTTGCTGCCGGAACGG
GGTCGTTTACCTTCGCGGATCGCTTGCTGGGCGCGAGGAACGCGGCGCTC
GTCGGGGTGTCGCGCGTTTCCGCAGAGGGGGCGGCGGCAAGGAACGGCGG
CGGCGACAGCGACGCAGGAGGGAAGACCGGCCACGACCTCTTCCTCAGCA
GAAGGAAAAGCGGCGGCGGCGAGGTAGGGGGCGAGGCTCGCGCGGCGGCG
GCAGCGGCGGCGAAGGACGGCCGGGAAAACTCCCTCCTGTACAACATGGC
CACGACCGAAGACTTCCTGCGGCCGCTGAAGGCCTTCCGGTGGCGGCGGG
CCTACGCGAACCGCCGCGGGGACTTCATGGTGCCGTACGGAACCGCGGCG
TTCGTCGAGTCCGACGAAGGGGACGGCTCCGAGCCATCCCCTTCAGACCG
AGATGGCGCCAAGACGGGGGCGGAGGAGGAGCAGGACGTGTCCGAAAGCG
ACGTCGTCTCGCGAGGCGTGTCGTCGCCACCACCGGATGGCGCCACGGCC
GTCCTTGCTGCCGGAACGGGGTCGTTTACCTTCGCGGATCGCTTGCTGGG
CGCGAGGAACGCGGCGCTCGTCGGGGTGTCGCGCGTTTCCGCAGAGGGGG
CGGCGGCAAGGAACGGCGGCGGCGACAGCGACGCAGGAGGCGCGGTACCT
GATGGGACGCTAGACGGGGCTGGCGCTGCAAAGAAGGAGGAGGTGCACGC
GGGAAAGAGCATGGAGGAGGAGATGGCCGCCGGGCTGAACTCGTGCGGGT
GGGAGAAGGGCGCGGTACCTGATGGGACGCTAGACGGGGCTGGCGCTGCA
AAGAAGGAGGAGGTGCACGCGGGAAAGAGCATGGAGGAGGAGATGGCCGC
CGGGCTGAACTCGTGCGGGTGGGAGAAGGTGTCGGTGGATTTCGGCGGGC
TCGCTCCCTTCTCCCACAACAAGATCTGCGCACTGTCCAGGACCACCATC
ACGACCGCCTTGTACGGCTCCGGAAGATCGGTCGTCGACCACGCCGCTGC
CTTCTTGGTGGCGCACGACCGTGAGGCTAGCGACGACGACGACGATCGAG
GCAATTCTTCTTGAGTGTCGGTGGATTTCGGCGGGCTCGCTCCCTTCTCC
CACAACAAGATCTGCGCACTGTCCAGGACCACCATCACGACCGCCTTGTA
CGGCTCCGGAAGATCGGTCGTCGACCACGCCGCTGCCTTCTTGGTGGCGC
ACGACCGTGAGGCTAGCGACGACGACGACGATCGAGGCAATTCTTCTTGA
back to top