mRNA_E-fasciculatus_F_contig1225.1740.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1225.1740.1
Unique NamemRNA_E-fasciculatus_F_contig1225.1740.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1225.1740.1 vs. uniprot
Match: A0A6H5JW67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW67_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.170e-41
Identity = 86/100 (86.00%), Postives = 87/100 (87.00%), Query Frame = -2 
Query:    3 GGDDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSGESDAESRRRSPVGGRSRSSPVPTPMDVSVSGCDEXXXXXXXXXXXXXXXDEGKGRDRAVEE 302
            G DDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSG SDAESRRRSPVGGRSRSSPVPTPMDVS  GCDE   XXXXXXXX    DEGK RDR V+E
Sbjct:  445 GSDDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSGGSDAESRRRSPVGGRSRSSPVPTPMDVSAPGCDEEREXXXXXXXXAKRKDEGKRRDRTVDE 544
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BLAST of mRNA_E-fasciculatus_F_contig1225.1740.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.410e-29
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -2 
Query:  126 GGDDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSGESDAESRRRSPVGGRSRSSP 302
            GGDDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSGESDAESRRRSPVGGRSRSSP
Sbjct:  263 GGDDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSGESDAESRRRSPVGGRSRSSP 321
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1225.1740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JW67_9PHAE3.170e-4186.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIW7_ECTSI1.410e-29100.00Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1225contigE-fasciculatus_F_contig1225:3005..3309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927733.213928-CDS-E-fasciculatus_F_contig1225:3004..33071622927733.213928-CDS-E-fasciculatus_F_contig1225:3004..3307Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1225 3005..3307 +
1695995670.9389303-CDS-E-fasciculatus_F_contig1225:3004..33071695995670.9389303-CDS-E-fasciculatus_F_contig1225:3004..3307Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1225 3005..3307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1225.1740.1prot_E-fasciculatus_F_contig1225.1740.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1225 3005..3307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1225.1740.1

>prot_E-fasciculatus_F_contig1225.1740.1 ID=prot_E-fasciculatus_F_contig1225.1740.1|Name=mRNA_E-fasciculatus_F_contig1225.1740.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
PSSTALSRPFPSSFFFGMAAAPPPSSLSSSHPDTDTSMGVGTGDDLDRPP
TGERRRDSASLSPESPRQTASSHAPCDTGMNSAFRPSSCTAPGPSRPSSP
P
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mRNA from alignment at E-fasciculatus_F_contig1225:3005..3309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1225.1740.1 ID=mRNA_E-fasciculatus_F_contig1225.1740.1|Name=mRNA_E-fasciculatus_F_contig1225.1740.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=305bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1225:3005..3309+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTTCCTCCACAGCCCTATCCCGTCCTTTTCCTTCGTCTTTCTTTTTCGG
CATGGCCGCAGCCCCTCCCCCTTCCTCCCTCTCCTCATCGCACCCAGACA
CGGACACATCCATGGGCGTAGGCACCGGTGACGACCTGGATCGGCCGCCG
ACGGGAGAGCGGCGGCGCGACTCAGCGTCACTTTCGCCGGAGTCCCCTAG
GCAGACCGCATCCTCCCACGCGCCCTGCGACACGGGCATGAACTCCGCCT
TCAGGCCAAGCAGTTGCACCGCGCCCGGCCCGTCCAGGCCATCGTCGCCT
CCCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1225:3005..3309+

>mRNA_E-fasciculatus_F_contig1225.1740.1 ID=mRNA_E-fasciculatus_F_contig1225.1740.1|Name=mRNA_E-fasciculatus_F_contig1225.1740.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1225:3005..3309+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTTCCTCCACAGCCCTATCCCGTCCTTTTCCTTCGTCTTTCTTTTTCGG
CATGGCCGCAGCCCCTCCCCCTTCCTCCCTCTCCTCATCGCACCCAGACA
CGGACACATCCATGGGCGTAGGCACCGGTGACGACCTGGATCGGCCGCCG
ACGGGAGAGCGGCGGCGCGACTCAGCGTCACTTTCGCCGGAGTCCCCTAG
GCAGACCGCATCCTCCCACGCGCCCTGCGACACGGGCATGAACTCCGCCT
TCAGGCCAAGCAGTTGCACCGCGCCCGGCCCGTCCAGGCCATCGTCGCCT
CCCCCTTCCTCCACAGCCCTATCCCGTCCTTTTCCTTCGTCTTTCTTTTT
CGGCATGGCCGCAGCCCCTCCCCCTTCCTCCCTCTCCTCATCGCACCCAG
ACACGGACACATCCATGGGCGTAGGCACCGGTGACGACCTGGATCGGCCG
CCGACGGGAGAGCGGCGGCGCGACTCAGCGTCACTTTCGCCGGAGTCCCC
TAGGCAGACCGCATCCTCCCACGCGCCCTGCGACACGGGCATGAACTCCG
CCTTCAGGCCAAGCAGTTGCACCGCGCCCGGCCCGTCCAGGCCATCGTCG
CCTCCC
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