mRNA_E-fasciculatus_F_contig12247.1738.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12247.1738.1
Unique NamemRNA_E-fasciculatus_F_contig12247.1738.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: D7G1S4_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S4_ECTSI)

HSP 1 Score: 533 bits (1373), Expect = 6.020e-185
Identity = 266/271 (98.15%), Postives = 269/271 (99.26%), Query Frame = 1
Query:    1 VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
            VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRG+EGPIVVILAPTRELAGQIY+EANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLK+TNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDI QVVHVLSGDALKWKWFSDNVPAFVAKGKV V
Sbjct:  167 VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGQEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKSTNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIHQVVHVLSGDALKWKWFSDNVPAFVAKGKVLV 437          
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A6H5KLM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM8_9PHAE)

HSP 1 Score: 422 bits (1085), Expect = 2.440e-144
Identity = 211/213 (99.06%), Postives = 213/213 (100.00%), Query Frame = 1
Query:    1 VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ 639
            VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIV+GKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMM+LDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ
Sbjct:  249 VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVKGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ 461          
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A835ZDT0_9STRA (Putative DEAD/DEAH box RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT0_9STRA)

HSP 1 Score: 342 bits (876), Expect = 6.890e-114
Identity = 168/236 (71.19%), Postives = 198/236 (83.90%), Query Frame = 1
Query:  109 QGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFN-LTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
            +G EAPTPIQAQALPV +SGRD+IGVA+TGSGKT AFVWP LVH+M QREI  G EGPI VIL+PTRELA QI+ +A KFAK+ G  VCAV+GGAGKWEMQKAL+EGPEIVVATPGR+IEMIK+KATN+ RCT ++LDEADRMFD+GF YQMRSIV Q RP RQT++FSATFKR+V+QLA D+L DPV +++G    +T+NEDIRQVVHVL  DA KW W +  +P FVA GKV +
Sbjct:   33 EGLEAPTPIQAQALPVALSGRDLIGVAKTGSGKTFAFVWPVLVHVMAQREIEDG-EGPIAVILSPTRELATQIHGQAKKFAKQLGANVCAVFGGAGKWEMQKALREGPEIVVATPGRLIEMIKIKATNLARCTCVVLDEADRMFDLGFGYQMRSIVDQVRPSRQTMLFSATFKRKVEQLARDVLTDPVRINVGHAGAMTSNEDIRQVVHVLPSDAAKWSWLTSELPGFVANGKVLI 267          
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A7S3UTY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTY6_HETAK)

HSP 1 Score: 335 bits (859), Expect = 5.960e-111
Identity = 168/258 (65.12%), Postives = 196/258 (75.97%), Query Frame = 1
Query:   40 VPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
            +P P+ SF+HAG D  L   + R G E PTPIQAQALPV + GRD+IG+A+TGSGKT AF WP L H +DQR I +G EGPI VIL+PTRELA QIY E  KFAK  G KVCA+ GGAGK+EMQK LK GPE+VVATPGR+IEMIK KATNMRRCT+ +LDEADRMF+MGFEYQMRSIV Q RPDRQTLMFSATFK+++Q LA DIL DPV + +G     ANEDI Q++ V+   A KW W +  +  FV  GKV V
Sbjct:   21 LPRPLPSFRHAGLDPKLAQTIARLGLENPTPIQAQALPVALGGRDLIGIAKTGSGKTYAFAWPVLTHALDQRYIEKG-EGPIAVILSPTRELASQIYAEVKKFAKPLGAKVCALIGGAGKYEMQKELKTGPEVVVATPGRLIEMIKCKATNMRRCTICVLDEADRMFEMGFEYQMRSIVDQIRPDRQTLMFSATFKKKIQILARDILRDPVKITVGLVG-QANEDIHQIITVMHDSAAKWNWLAQRMAEFVQAGKVLV 276          
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A443SEW0_9ACAR (RNA helicase (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SEW0_9ACAR)

HSP 1 Score: 307 bits (786), Expect = 1.560e-98
Identity = 153/277 (55.23%), Postives = 201/277 (72.56%), Query Frame = 1
Query:    4 SVEAGKQRNDTGV-------PAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
            +VE  + RN  G+       P PV SF H GFD+ L+  + +Q +  PTPIQAQ +PVV+SGRD+IG+A+TGSGKT A++WP LVH+MDQ+E+  G +GPI +ILAPTREL+ QIY EA KF K YG  V   YGGA K+E+ K ++ G EI+VATPGRMI+MIK+KATN+RR TM++LDEADRMFDMGFE Q+RSI    RPDRQ LMFSATFK++V+++A D+L DP+ V  G     ANED+ Q+V VL+  + KW+W +  +  F + G V +
Sbjct:  215 TVEVNELRNRLGIRVLGASPPKPVTSFAHFGFDEQLMKIIRKQEYTQPTPIQAQGIPVVLSGRDLIGIAKTGSGKTAAYIWPMLVHIMDQKELEPG-DGPIGLILAPTRELSQQIYIEAKKFGKAYGVSVICAYGGANKYELSKDMEAGAEIIVATPGRMIDMIKMKATNLRRVTMLVLDEADRMFDMGFEVQVRSICDHVRPDRQCLMFSATFKKKVERVARDVLTDPIKVIQGELG-EANEDVEQIVKVLADGSEKWEWLNAKLVEFTSNGSVLI 489          
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A4D9D4S8_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4S8_9STRA)

HSP 1 Score: 313 bits (803), Expect = 3.280e-98
Identity = 157/256 (61.33%), Postives = 200/256 (78.12%), Query Frame = 1
Query:   49 PVQSFKHA-GFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
            P+ SFKHA GF + LL E++++GF+APTPIQAQALP+ ++GRD++G+AQTGSGKTLAFVWP+LVHLMDQ E+V+G EGPIV+ILAPTRELA QIY EA KFAK +G +V AV+GGAGKWE  K LK G EI++ATPGR++E +K KAT + RCT ++LDEADRMFD+GFE Q+ S++ Q RPDRQ+LMFSATFKR+V+ LA  +L DP+ +  G     ANED+RQ V V+  +  K +W     P+ V  GKV V
Sbjct:  294 PIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKG-EGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATTLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKMLRDPIRIVCGRAG-QANEDVRQEVVVVPREEGKEEWLFQKFPSLVEAGKVLV 547          
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A7S2S1C1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1C1_9STRA)

HSP 1 Score: 311 bits (796), Expect = 2.420e-97
Identity = 154/260 (59.23%), Postives = 193/260 (74.23%), Query Frame = 1
Query:   34 TGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
            T  P PVQSF   G DD +L  +   G E+PTPIQA ALP  +SGRD+IG+A TGSGKT +F+WP + H M Q+E+  G +GPI ++LAPTREL  QI+  A ++ K +G    AV+GG GKWEM +ALK+G EIVVATPGR++E+I+ KATN+RRCTM++LDEADRMFDMGFEYQMRSIV Q RPDRQTL+FSATFKR+V+QLA+ +L DPV + +GG    A + I QVVHVLS D  KW+W    +   VA GK+ V
Sbjct:  222 TDAPWPVQSFVQLGLDDRILRAIASAGLESPTPIQATALPTALSGRDVIGIAGTGSGKTFSFLWPMITHAMAQQELAPG-DGPIGLVLAPTRELVEQIHRHAKRYLKPFGGYSVAVFGGEGKWEMARALKQGAEIVVATPGRLMELIRAKATNLRRCTMVVLDEADRMFDMGFEYQMRSIVDQVRPDRQTLLFSATFKRKVEQLATQVLRDPVRIQVGGHGEAA-QHIHQVVHVLSTDRDKWQWLVGKIKNLVAAGKLLV 479          
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: K3WM87_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM87_GLOUD)

HSP 1 Score: 303 bits (776), Expect = 3.450e-97
Identity = 149/258 (57.75%), Postives = 192/258 (74.42%), Query Frame = 1
Query:   40 VPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
            VP+P++SF H GFD  +L+ +++ G EAPT IQAQ+ PV +SGRDM+G+A+TGSGKTLAF  P + H+MDQRE+ R  EGPI V+LAPTRELA QI+T A +F   YG +  A+YGG GKWE  +A+++G E++VATPGR+IEMI+ K   M R T ++LDEADRMF+MGFE Q+RSI+ Q RPDRQTLMFSATF+RR++ LA DILD+PV V IG     ANEDI Q+  V+  D  KW W   N+   VA G+V +
Sbjct:   93 VPSPIRSFVHLGFDRKMLALLMKLGLEAPTAIQAQSFPVALSGRDMVGIAKTGSGKTLAFTLPMVQHVMDQREL-RKDEGPIAVVLAPTRELAHQIFTHAKRFLHLYGAECAAIYGGVGKWEQIQAVRKGAEVIVATPGRLIEMIRKKTVKMNRVTFVVLDEADRMFEMGFEPQLRSIMGQIRPDRQTLMFSATFRRRIEALAFDILDNPVKVMIGKIG-QANEDIHQIAVVVPNDNAKWPWLMSNLKGIVADGRVLI 348          
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: D0NN87_PHYIT (DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NN87_PHYIT)

HSP 1 Score: 299 bits (766), Expect = 2.200e-96
Identity = 148/258 (57.36%), Postives = 189/258 (73.26%), Query Frame = 1
Query:   40 VPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
            VPAPV+SF H G D  +L  +++ G EAPT IQ QA PV +SGRD+IG+A+TGSGKTLAF  P + H+MDQRE+ RG EGPI ++LAPTRELA Q Y +A KF   YG    A+YGGAGKWE  +ALK+G E+VVATPGR+IEMI+ KA  M R T ++LDEADRMF+MGFE Q+RS++ Q RPDRQ LMFSATF+RR++ LA D+L +PV + +G     ANEDIRQ+  VL G   KW W    + + V +G++ +
Sbjct:   57 VPAPVRSFMHLGLDRKMLQTLMKLGLEAPTAIQTQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRELQRG-EGPIALVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQALKKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQILMFSATFRRRIETLALDVLTNPVKLTVGQIG-QANEDIRQIAVVLPGHGAKWPWLMSKIRSLVDEGRLLI 312          
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A4P9WHU4_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WHU4_9FUNG)

HSP 1 Score: 300 bits (767), Expect = 3.830e-96
Identity = 154/259 (59.46%), Postives = 190/259 (73.36%), Query Frame = 1
Query:   40 VPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGP-EIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
            V  P  SF H GFD+ LL  V R G+  PT IQ QA+PV + GRD+IG+A+TGSGKT AFVWP LVH+MDQRE+ RG EGPI +ILAPTRELA QI+ EA KFAK YG KV AVYGGA K +  K L+ G  EI+VATPGR+I+++K+KATN+RR + ++LDEADRMFD+GFE Q+RSI A  RPDRQTL+FSATF++RV++LA D L DPV + +G     AN D+ Q   VL  D+LKW W +  +  F A G V V
Sbjct:   59 VAKPCISFAHFGFDEKLLGTVSRHGYAEPTGIQRQAVPVALGGRDIIGIAKTGSGKTAAFVWPMLVHIMDQRELERG-EGPIGLILAPTRELANQIHVEARKFAKAYGLKVAAVYGGASKGDQFKDLRAGGIEILVATPGRLIDLVKMKATNLRRVSYLVLDEADRMFDLGFEPQVRSICAAVRPDRQTLLFSATFQKRVERLARDALTDPVRISVGNVG-QANSDVTQTAVVLEDDSLKWSWLAARLAGFAASGSVIV 315          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1S4_ECTSI6.020e-18598.15DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KLM8_9PHAE2.440e-14499.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDT0_9STRA6.890e-11471.19Putative DEAD/DEAH box RNA helicase n=1 Tax=Tribon... [more]
A0A7S3UTY6_HETAK5.960e-11165.12Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A443SEW0_9ACAR1.560e-9855.23RNA helicase (Fragment) n=1 Tax=Leptotrombidium de... [more]
A0A4D9D4S8_9STRA3.280e-9861.33Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A7S2S1C1_9STRA2.420e-9759.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K3WM87_GLOUD3.450e-9757.75Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0NN87_PHYIT2.200e-9657.36DEAD/DEAH box RNA helicase, putative n=1 Tax=Phyto... [more]
A0A4P9WHU4_9FUNG3.830e-9659.46P-loop containing nucleoside triphosphate hydrolas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12247contigE-fasciculatus_F_contig12247:561..3967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score535.4
Seed ortholog evalue1.5e-149
Seed eggNOG ortholog2880.D7G1S4
Preferred nameDDX42
KEGG koko:K12835
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0010501,GO:0010941,GO:0015030,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0033036,GO:0034641,GO:0042623,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051179,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
EggNOG free text desc.RNA secondary structure unwinding
EggNOG OGsCOG0513@1,KOG0339@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons6
Model size813
Cds size813
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12247.1738.1prot_E-fasciculatus_F_contig12247.1738.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12247 561..3967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927732.6621559-CDS-E-fasciculatus_F_contig12247:560..7251622927732.6621559-CDS-E-fasciculatus_F_contig12247:560..725Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 561..725 +
1695995670.7063828-CDS-E-fasciculatus_F_contig12247:560..7251695995670.7063828-CDS-E-fasciculatus_F_contig12247:560..725Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 561..725 +
1622927732.7092414-CDS-E-fasciculatus_F_contig12247:1320..15111622927732.7092414-CDS-E-fasciculatus_F_contig12247:1320..1511Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 1321..1511 +
1695995670.7207048-CDS-E-fasciculatus_F_contig12247:1320..15111695995670.7207048-CDS-E-fasciculatus_F_contig12247:1320..1511Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 1321..1511 +
1622927732.7552745-CDS-E-fasciculatus_F_contig12247:2201..23581622927732.7552745-CDS-E-fasciculatus_F_contig12247:2201..2358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 2202..2358 +
1695995670.7381575-CDS-E-fasciculatus_F_contig12247:2201..23581695995670.7381575-CDS-E-fasciculatus_F_contig12247:2201..2358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 2202..2358 +
1622927732.77338-CDS-E-fasciculatus_F_contig12247:2865..29911622927732.77338-CDS-E-fasciculatus_F_contig12247:2865..2991Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 2866..2991 +
1695995670.7517612-CDS-E-fasciculatus_F_contig12247:2865..29911695995670.7517612-CDS-E-fasciculatus_F_contig12247:2865..2991Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 2866..2991 +
1622927732.7870464-CDS-E-fasciculatus_F_contig12247:3438..35221622927732.7870464-CDS-E-fasciculatus_F_contig12247:3438..3522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 3439..3522 +
1695995670.7617133-CDS-E-fasciculatus_F_contig12247:3438..35221695995670.7617133-CDS-E-fasciculatus_F_contig12247:3438..3522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 3439..3522 +
1622927732.806169-CDS-E-fasciculatus_F_contig12247:3877..39671622927732.806169-CDS-E-fasciculatus_F_contig12247:3877..3967Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 3878..3967 +
1695995670.7720814-CDS-E-fasciculatus_F_contig12247:3877..39671695995670.7720814-CDS-E-fasciculatus_F_contig12247:3877..3967Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12247 3878..3967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12247.1738.1

>prot_E-fasciculatus_F_contig12247.1738.1 ID=prot_E-fasciculatus_F_contig12247.1738.1|Name=mRNA_E-fasciculatus_F_contig12247.1738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=271bp
VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQAL
PVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILA
PTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVAT
PGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQ
TLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDA
LKWKWFSDNVPAFVAKGKVRV
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mRNA from alignment at E-fasciculatus_F_contig12247:561..3967+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12247.1738.1 ID=mRNA_E-fasciculatus_F_contig12247.1738.1|Name=mRNA_E-fasciculatus_F_contig12247.1738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3407bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12247:561..3967+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTCGGTGGAGGCCGGCAAGCAGAGGAACGACACCGGCGTCCCTGCGCC CGTGCAGTCGTTCAAGCACGCCGGGTTCGACGACCTCCTGCTGTCCGAGG TGGTCCGGCAGGGCTTCGAGGCTCCCACGCCGATCCAGGCGCAGGCCTTG CCCGTCGTCATGTCGGTGAGGGTCTTTTGACGAGTGGGTGGGGACGTTTG GTTTTTTCGCTGACGATATCACAACAAGGAATTTTTCCTGTATCCACAGA TGAGAGTCCGTCTGACGATTGGGGTTAACTAGCTATCTTTTCTTTGCTTT GCAACGGCACTGTTCAGAACGAATTCATCTGCATCCACGCATGAGAGTGC GGGGTAAAATGGCACTGAGCCCGAAAGCGTTCTTCTGGCTGCTGATGATG ATGACACTGCGTTGTGTGGTCTCTTTGTTTAAGTCTCTCTCGCCCACTGG TGATCCTATTGGGTTGCTCTTGTTGTAACCACATCAAGAAAAACGGCAGT GCGACGTTTCTTGTCGGAAAGAAAACCAGCGCGGGAACATGAGCATGTCG AGAATGCCGCCAACAGACTCGCCGAAGATTCAGATTCAGACCCCATCCCG CGCTCTTTTTTTTTTTCTTGTTTCGCCGCATCACCTCTTTTTTTTTCCGC TTTGCCGAATCACTTTTTCTTTCTTTCGTTTTCCCGAACCAGTTGTTTTT TGTTTGCCTCCATCATCCTTCGCCTCGCATCCCTCCCCCTTTTGTCTTTT GTATGTCCAGGGGAGAGACATGATCGGCGTGGCGCAGACCGGGTCGGGCA AGACCCTGGCCTTCGTTTGGCCATCCCTCGTGCACCTTATGGACCAGAGG GAGATCGTGAGGGGGAAGGAAGGCCCCATCGTGGTGATCCTGGCACCGAC GAGAGAGCTTGCCGGTCAGATATACACGGAGGCCAACAAGTTCGCCAAGA GGTTGGTTTCGTTTAAGGGGGCTCGTGCGTGTTTCCCCCGCGCATTTGCT GGAGGATAGATAGCCATGGGAGATACCAAACGCTGCTTGGGTTTCGGGGG TTAGGGGAGCGCGCGTGTGTGTGTGCTTTGTGCGTGTTTCTTGGATTGGA GGTGTCTGAGGTGTCTGGAGGTGTCTGTCTGACCGGCCGAGCAATGAAAA CACGCCGCACGTTCTAGTCTAGCCGGGAAAACAAACACGCTTCTCTGTTC CTCCGGCTCCCCCGCTGTGTGTCTCTTAGTATGCGTGTGTGTATCGGAGT ACATTGGGCAGTTTCTTCTCGTCGAAAACGACAAATAACGCACGTTTTCA GCGTTGCTTCCACTAGCAGCACATAGCAGCACTAGCAGCAGCTCTCCATC TCTACTCTTTGAGGCGAGTGGGAAAAAATCGTATTTTCGTCATCATTTTC GTGGTCACAACCTACATGTATTGTACCACACCGTAGGGTATCTAGACGAG TAACGCAGGAACATGTTGCGTTTCATTTTAGACATTCCGATGGCAAAACA GAACAGCCTACGGAAGGTAGGTTTTCCCCTGGGGTTTGCGACAACCATCT GTCTTACAATGCGACCCAACAGGCGATACCCTCCTCCTCCTCACGACTCA CGATGGTCTTTTGGTTATGTTGTCTTGGCCTTCGACGACAGGTACGGGTG CAAAGTGTGCGCCGTCTATGGCGGTGCGGGTAAGTGGGAGATGCAGAAGG CCCTCAAGGAAGGGCCGGAGATCGTTGTGGCTACCCCTGGCCGCATGATC GAGATGATCAAGCTCAAGGCCACCAACATGCGGAGGTGCACCATGATGGT GAGCGAGAGAGCGATAGGCGGGGGGTACAACCAAGAGGTATACCAGTATT CGACACGAGACATGACAACCAAGAAATGTAACACAATTCCTTTCCCAGTG GTATTGGTCTTGTTGGTCAGCATAAGCCCAACAACATAGCACTACAATAG TCTCGGACCTGTAGCAGGGTGACACGAGATACAACACAAGACACCACACC CCGCACTATTGTAATGAACACGCCTGGTGACAGTTGTTTTGATGACGGTA TGTATTCGGCAGATTCCACCGTGGCGTGTTTTCTTACGGTAGGCCATCGG GTGTTCGCTGTCCCGTTAGCTCCACCGGCAGCAGCGACTTGTTTGTTTCA GCAACAAGGGCGACGAGAGCAGCGGGCGGAGTGCGTCATTGCAACGCTTG TATATCACCACAAAGCAATGGCGCCATCTCCACATCTCTTGGTGTGGAAG GAAACACTTCCCAAATAGTTTTTGCTTTGAACGTTTTTTTTTTTTTTTTT TTCAGATTTTGGACGAGGCCGACCGGATGTTCGACATGGGTTTCGAGTAC CAGATGCGGTCCATCGTGGCACAGACAAGGCCCGACAGGCAGACGCTCAT GTTTAGCGCCACTTTCAAGAGGCGGGTTCAGGTGGGGACACTACGACACC TTTTCCCGACCCTTTTCCTCTTCGGCCTGTAAAGCTCCCTGTGTGCCGCC TGCGGCGGCCTTCCTCTGTTGAGTTGGTGGGTGCGGGGTATCCTAGCCGT CCCGTCCTTCGTGGTTCGTGGTTCGTGGTTTGTTTTATCCGTTCTCTTTA TTCCGGGCTTCCATCTTATTGAATCGAGTGCGCTATGAGGGGAGGCCCAG TTTTCTCGTGCGAAGGCGGCGGGCGTGGCGAAAAAGCATGCTGTCTCTCT TTCTGTCTGCCCTATATCTCCAATGAGCTCGTATTTCGCGGCGACGTCTG ATTGTGTTTTCTGGCGATGTATGTGTGACGTCACGCAAGTCACGCCATCC GTATCCGTGTTGTGTCTTGTCTTGGACCTTGTCTTGGACCTTGCCGCCAT CCCCCTCCCCTCGGTGTTGCCTGCACAGCAACTGGCGAGTGACATCCTCG ACGACCCCGTTCACGTCCACATCGGCGGTTTCAACCTCACGGCCAACGAA GACATCCGGCAGGTGAGACGAGGCACACACATCATGCCCCCGGTGAAGTT TTTGTTCGCGTCCTGCCTGCACCGGGCGTGCAGCGCTCGGCGGTTCATGT GTCCGTTCTTTGGGTTTCGATGTGGCGTTGGCGGCGTTGTTGATGACGGC CAGCGGCGGGCGCTTGGCCGGTGCTGAGGTGAGCAGCGCGCTGCGGTGCT GATGCCACTCGTGATTTCGTTTAGCCTCGCTCACGTTGTTTTCTGTTGCT GCTTCTGCTGCTTCTGCTTCTGCTTCTGCTGCTGCTGCTGCTGCTGCTGC TGCTGCTGATGCTGATGCTGCTGATGCTATTGCTCCCGTCGCTGACGACG TCGTCTTCTTTTTCCAGGTGGTGCACGTGCTCTCGGGAGATGCCCTCAAG TGGAAATGGTTTAGCGACAACGTCCCCGCCTTCGTGGCAAAGGGGAAGGT GCGCGTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12247:561..3967+

>mRNA_E-fasciculatus_F_contig12247.1738.1 ID=mRNA_E-fasciculatus_F_contig12247.1738.1|Name=mRNA_E-fasciculatus_F_contig12247.1738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1626bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12247:561..3967+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTCGGTGGAGGCCGGCAAGCAGAGGAACGACACCGGCGTCCCTGCGCC
CGTGCAGTCGTTCAAGCACGCCGGGTTCGACGACCTCCTGCTGTCCGAGG
TGGTCCGGCAGGGCTTCGAGGCTCCCACGCCGATCCAGGCGCAGGCCTTG
CCCGTCGTCATGTCGGTTTCGGTGGAGGCCGGCAAGCAGAGGAACGACAC
CGGCGTCCCTGCGCCCGTGCAGTCGTTCAAGCACGCCGGGTTCGACGACC
TCCTGCTGTCCGAGGTGGTCCGGCAGGGCTTCGAGGCTCCCACGCCGATC
CAGGCGCAGGCCTTGCCCGTCGTCATGTCGGGGAGAGACATGATCGGCGT
GGCGCAGACCGGGTCGGGCAAGACCCTGGCCTTCGTTTGGCCATCCCTCG
TGCACCTTATGGACCAGAGGGAGATCGTGAGGGGGAAGGAAGGCCCCATC
GTGGTGATCCTGGCACCGACGAGAGAGCTTGCCGGTCAGATATACACGGA
GGCCAACAAGTTCGCCAAGAGGGGAGAGACATGATCGGCGTGGCGCAGAC
CGGGTCGGGCAAGACCCTGGCCTTCGTTTGGCCATCCCTCGTGCACCTTA
TGGACCAGAGGGAGATCGTGAGGGGGAAGGAAGGCCCCATCGTGGTGATC
CTGGCACCGACGAGAGAGCTTGCCGGTCAGATATACACGGAGGCCAACAA
GTTCGCCAAGAGGTACGGGTGCAAAGTGTGCGCCGTCTATGGCGGTGCGG
GTAAGTGGGAGATGCAGAAGGCCCTCAAGGAAGGGCCGGAGATCGTTGTG
GCTACCCCTGGCCGCATGATCGAGATGATCAAGCTCAAGGCCACCAACAT
GCGGAGGTGCACCATGATGGTACGGGTGCAAAGTGTGCGCCGTCTATGGC
GGTGCGGGTAAGTGGGAGATGCAGAAGGCCCTCAAGGAAGGGCCGGAGAT
CGTTGTGGCTACCCCTGGCCGCATGATCGAGATGATCAAGCTCAAGGCCA
CCAACATGCGGAGGTGCACCATGATGATTTTGGACGAGGCCGACCGGATG
TTCGACATGGGTTTCGAGTACCAGATGCGGTCCATCGTGGCACAGACAAG
GCCCGACAGGCAGACGCTCATGTTTAGCGCCACTTTCAAGAGGCGGGTTC
AGATTTTGGACGAGGCCGACCGGATGTTCGACATGGGTTTCGAGTACCAG
ATGCGGTCCATCGTGGCACAGACAAGGCCCGACAGGCAGACGCTCATGTT
TAGCGCCACTTTCAAGAGGCGGGTTCAGCAACTGGCGAGTGACATCCTCG
ACGACCCCGTTCACGTCCACATCGGCGGTTTCAACCTCACGGCCAACGAA
GACATCCGGCAGCAACTGGCGAGTGACATCCTCGACGACCCCGTTCACGT
CCACATCGGCGGTTTCAACCTCACGGCCAACGAAGACATCCGGCAGGTGG
TGCACGTGCTCTCGGGAGATGCCCTCAAGTGGAAATGGTTTAGCGACAAC
GTCCCCGCCTTCGTGGCAAAGGGGAAGGTGCGCGTTGTGGTGCACGTGCT
CTCGGGAGATGCCCTCAAGTGGAAATGGTTTAGCGACAACGTCCCCGCCT
TCGTGGCAAAGGGGAAGGTGCGCGTT
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