mRNA_E-fasciculatus_F_contig12203.1716.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12203.1716.1
Unique NamemRNA_E-fasciculatus_F_contig12203.1716.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12203.1716.1 vs. uniprot
Match: D7G2C6_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C6_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.410e-46
Identity = 84/98 (85.71%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    1 WRKRYARGQVKLGCNEGWRKGCAQYVVLLGADDGAHGTPPPPSGGNPARSPAPRHHQHDTGSSSLATSP-DGRGGWERPTTVLSPSRPSPTKPRGLLP 291
            WRKRYARGQVKLGCNEGWRKGCAQYVVLLGADDGAHG PPP SGG+PARS  PRHHQH TGS+ LA +P  GRGG ERPTT+LSPSRPSPTKPRGLLP
Sbjct: 2429 WRKRYARGQVKLGCNEGWRKGCAQYVVLLGADDGAHGAPPP-SGGDPARSAGPRHHQHGTGSNRLAPAPAGGRGGGERPTTLLSPSRPSPTKPRGLLP 2525
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BLAST of mRNA_E-fasciculatus_F_contig12203.1716.1 vs. uniprot
Match: A0A6H5KWU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU7_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.580e-42
Identity = 82/98 (83.67%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:    1 WRKRYARGQVKLGCNEGWRKGCAQYVVLLGADDGAHGTPPPPSGGNPARSPAPRHHQHDTGSSSLATSP-DGRGGWERPTTVLSPSRPSPTKPRGLLP 291
            WRKRYARGQVKLG NEGWRKGCAQYVVLLGADDGA G PPP SGGNPA SP PRHHQHDTG++ LA +P  GRGG ER TTVLSPSRPS TKPRGLLP
Sbjct:  137 WRKRYARGQVKLGSNEGWRKGCAQYVVLLGADDGALGAPPP-SGGNPAFSPGPRHHQHDTGTTRLAPAPAGGRGGGERCTTVLSPSRPSLTKPRGLLP 233
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12203.1716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2C6_ECTSI4.410e-4685.71C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWU7_9PHAE3.580e-4283.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12203contigE-fasciculatus_F_contig12203:983..2008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-16_001650.1
Exons2
Model size293
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927729.879988-CDS-E-fasciculatus_F_contig12203:983..12471622927729.879988-CDS-E-fasciculatus_F_contig12203:983..1247Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12203 984..1247 -
1695995669.424801-CDS-E-fasciculatus_F_contig12203:983..12471695995669.424801-CDS-E-fasciculatus_F_contig12203:983..1247Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12203 984..1247 -
1622927729.895072-CDS-E-fasciculatus_F_contig12203:1981..20081622927729.895072-CDS-E-fasciculatus_F_contig12203:1981..2008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12203 1982..2008 -
1695995669.4327059-CDS-E-fasciculatus_F_contig12203:1981..20081695995669.4327059-CDS-E-fasciculatus_F_contig12203:1981..2008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12203 1982..2008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12203.1716.1prot_E-fasciculatus_F_contig12203.1716.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12203 984..2008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12203.1716.1

>prot_E-fasciculatus_F_contig12203.1716.1 ID=prot_E-fasciculatus_F_contig12203.1716.1|Name=mRNA_E-fasciculatus_F_contig12203.1716.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=97bp
WRKRYARGQVKLGCNEGWRKGCAQYVVLLGADDGAHGTPPPPSGGNPARS
PAPRHHQHDTGSSSLATSPDGRGGWERPTTVLSPSRPSPTKPRGLLP
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mRNA from alignment at E-fasciculatus_F_contig12203:983..2008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12203.1716.1 ID=mRNA_E-fasciculatus_F_contig12203.1716.1|Name=mRNA_E-fasciculatus_F_contig12203.1716.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1026bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12203:983..2008- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGAGGAAGCGTTACGCTCGGGGGCAGGTGCGCGCGGTTTGTTTGTTTCG
TTTGTGCCGCGTGCGTGACCAGGGCTGTGTGCTGTGTGGCGAGTCTTATC
TTTGCGACAGTCTTCTCGCCCATCCTGCGTGACTCCGGATGATACATACG
TCAAACGTATTCGCACAGAAAGGTGTGTGGATTGGCACCAGAGTAGATGG
GACGAGTATCCATACACAAACATTCTTAGGCGATGTTGTCTGTCAGAACG
GATTTGCAGATGGGGTTCATTTTTTGCGTTCACATTCACCGCGTTGCGCA
TTTTCGAATTTTGTCCCCCTGCCAGGGACCGCTCTAAGTCTGGCGTATTG
TATTGGTCAGCCAGTTGGCGCGGTCAATGCGTAGAATATGGGCACACACA
CGCACACACCCTCACGGGGTCCCAGACCATGGCGTTAAGGCGTCTTTACA
TTGGTCAGCCGGTGAGCGCGGTCGATGCCAAACTACAAGGACACGCACAC
ACGCACACACGCACACACGCACACACCCGGGCGTGGGTGCTCTGTTCGTC
GCTGTTTTTTCTCGTGCGGTGTTTTCCGTTTACCGCTAGCGAGGAGGGTC
TCGTACCACGGAACGGTCGATCATCCCGTCCCGGATAGTTCACTTTTGTC
TGCCAACCACCGGATAGTTTCAGCCTTGTGGCTCTTCCTTGCCTTTGGCG
GCTCTTTGTTCCGTCTAAGATAGCCACCACCACCACGTACGCGACGCGGC
GCGCGAGACAGGTGAAGCTCGGGTGCAACGAGGGCTGGCGCAAGGGCTGC
GCGCAGTACGTCGTCCTCCTCGGCGCGGACGATGGCGCTCACGGCACGCC
ACCGCCTCCTTCGGGAGGAAACCCCGCCCGCTCCCCCGCTCCCCGCCACC
ACCAGCACGACACCGGCAGTAGTAGTCTAGCAACTTCCCCCGACGGCCGT
GGCGGTTGGGAGAGACCCACAACGGTGTTGTCTCCTTCGCGACCATCACC
GACAAAGCCGAGGGGGCTTCTGCCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12203:983..2008-

>mRNA_E-fasciculatus_F_contig12203.1716.1 ID=mRNA_E-fasciculatus_F_contig12203.1716.1|Name=mRNA_E-fasciculatus_F_contig12203.1716.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12203:983..2008- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGAGGAAGCGTTACGCTCGGGGGCAGTGGAGGAAGCGTTACGCTCGGGG
GCAGGTGAAGCTCGGGTGCAACGAGGGCTGGCGCAAGGGCTGCGCGCAGT
ACGTCGTCCTCCTCGGCGCGGACGATGGCGCTCACGGCACGCCACCGCCT
CCTTCGGGAGGAAACCCCGCCCGCTCCCCCGCTCCCCGCCACCACCAGCA
CGACACCGGCAGTAGTAGTCTAGCAACTTCCCCCGACGGCCGTGGCGGTT
GGGAGAGACCCACAACGGTGTTGTCTCCTTCGCGACCATCACCGACAAAG
CCGAGGGGGCTTCTGCCCGTGAAGCTCGGGTGCAACGAGGGCTGGCGCAA
GGGCTGCGCGCAGTACGTCGTCCTCCTCGGCGCGGACGATGGCGCTCACG
GCACGCCACCGCCTCCTTCGGGAGGAAACCCCGCCCGCTCCCCCGCTCCC
CGCCACCACCAGCACGACACCGGCAGTAGTAGTCTAGCAACTTCCCCCGA
CGGCCGTGGCGGTTGGGAGAGACCCACAACGGTGTTGTCTCCTTCGCGAC
CATCACCGACAAAGCCGAGGGGGCTTCTGCCC
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