mRNA_E-fasciculatus_F_contig12202.1715.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12202.1715.1
Unique NamemRNA_E-fasciculatus_F_contig12202.1715.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12202.1715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12202contigE-fasciculatus_F_contig12202:2021..2500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size481
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927729.6511548-CDS-E-fasciculatus_F_contig12202:2020..23261622927729.6511548-CDS-E-fasciculatus_F_contig12202:2020..2326Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 2021..2326 +
1695995669.3655136-CDS-E-fasciculatus_F_contig12202:2020..23261695995669.3655136-CDS-E-fasciculatus_F_contig12202:2020..2326Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 2021..2326 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927729.6698961-UTR-E-fasciculatus_F_contig12202:2326..25001622927729.6698961-UTR-E-fasciculatus_F_contig12202:2326..2500Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12202 2327..2500 +
1695995669.373121-UTR-E-fasciculatus_F_contig12202:2326..25001695995669.373121-UTR-E-fasciculatus_F_contig12202:2326..2500Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12202 2327..2500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12202.1715.1prot_E-fasciculatus_F_contig12202.1715.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12202 2021..2326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12202.1715.1

>prot_E-fasciculatus_F_contig12202.1715.1 ID=prot_E-fasciculatus_F_contig12202.1715.1|Name=mRNA_E-fasciculatus_F_contig12202.1715.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
STAVFFLSWSRAVWVFVVDTRGLVLLYLWGMGRDCGVFHSGFAADIRCQG
GEAVRSKTVTESRRWCFRAKVQPYRAHLLLRRLLREICFILWYAVFRVEQ
A*
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mRNA from alignment at E-fasciculatus_F_contig12202:2021..2500+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12202.1715.1 ID=mRNA_E-fasciculatus_F_contig12202.1715.1|Name=mRNA_E-fasciculatus_F_contig12202.1715.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12202:2021..2500+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTACCGCCGTGTTTTTTTTGTCTTGGAGCCGAGCCGTGTGGGTGTTTGT
CGTTGACACGCGGGGATTGGTCTTGTTGTACCTCTGGGGGATGGGCCGCG
ACTGTGGTGTCTTCCACAGTGGTTTTGCTGCCGATATCCGTTGCCAGGGC
GGCGAAGCTGTGCGATCGAAGACGGTCACAGAGTCCCGTCGTTGGTGTTT
TCGTGCAAAAGTACAGCCGTACCGCGCCCACCTTCTGTTGAGACGCTTGC
TGAGGGAGATATGTTTTATACTTTGGTATGCGGTTTTTCGAGTAGAACAA
GCTTGATAGCATACGCGGTTGGAAAGGCCGCTACCAGGCGTTTTCAATCG
CTCTTCACAAAACAATGGCAGCCACAACGCAAGACCTACACCTCGCCGTG
GGAGCGGCATCGCCTTCTTATTGAAAGGAATTTGTGCGATTTTGCCGCAT
CTGGTGGCCTCGCTCCAACCAGACCCCTGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12202:2021..2500+

>mRNA_E-fasciculatus_F_contig12202.1715.1 ID=mRNA_E-fasciculatus_F_contig12202.1715.1|Name=mRNA_E-fasciculatus_F_contig12202.1715.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12202:2021..2500+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTACCGCCGTGTTTTTTTTGTCTTGGAGCCGAGCCGTGTGGGTGTTTGT
CGTTGACACGCGGGGATTGGTCTTGTTGTACCTCTGGGGGATGGGCCGCG
ACTGTGGTGTCTTCCACAGTGGTTTTGCTGCCGATATCCGTTGCCAGGGC
GGCGAAGCTGTGCGATCGAAGACGGTCACAGAGTCCCGTCGTTGGTGTTT
TCGTGCAAAAGTACAGCCGTACCGCGCCCACCTTCTGTTGAGACGCTTGC
TGAGGGAGATATGTTTTATACTTTGGTATGCGGTTTTTCGAGTAGAACAA
GCTTGAAGTACCGCCGTGTTTTTTTTGTCTTGGAGCCGAGCCGTGTGGGT
GTTTGTCGTTGACACGCGGGGATTGGTCTTGTTGTACCTCTGGGGGATGG
GCCGCGACTGTGGTGTCTTCCACAGTGGTTTTGCTGCCGATATCCGTTGC
CAGGGCGGCGAAGCTGTGCGATCGAAGACGGTCACAGAGTCCCGTCGTTG
GTGTTTTCGTGCAAAAGTACAGCCGTACCGCGCCCACCTTCTGTTGAGAC
GCTTGCTGAGGGAGATATGTTTTATACTTTGGTATGCGGTTTTTCGAGTA
GAACAAGCTTGA
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