mRNA_E-fasciculatus_F_contig12193.1702.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12193.1702.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 116 bits (291), Expect = 3.390e-30 Identity = 65/106 (61.32%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 13 AGLDCSRQSPTLGRT----CYRWTAVTMTTTGGGSKCLDAFMLALNQACDGEEYRWYVSTLELQLVSLEFCGACRSAQLFDVRVDEHTPPTLWTSRTPHATPATRS 318
A L SR S TL RT + V M T GG LD ++ALNQACDG+E RWYVSTLELQLVSLE CGACRSAQL V V E TPPTLW+SRT TP+ RS
Sbjct: 53 ASLPASRHSWTLARTPTLRSKKKIIVAMANTEGGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRS 158
BLAST of mRNA_E-fasciculatus_F_contig12193.1702.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 100 bits (249), Expect = 3.950e-25 Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 103 SKCLDAFMLALNQACDGEEYRWYVSTLELQLVSLEFCGACRSAQLFDVRVDEHTPPTLWTSRTPHATPATRSR 321
SKCLDAF++ALNQ CDG+E RWY STLELQLVSLEFCGACR VRVD TP +LW+ RT T RSR
Sbjct: 39 SKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSR 111
BLAST of mRNA_E-fasciculatus_F_contig12193.1702.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 104 bits (260), Expect = 6.090e-24 Identity = 52/77 (67.53%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 88 TTGGGSKCLDAFMLALNQACDGEEYRWYVSTLELQLVSLEFCGACRSAQLFDVRVDEHTPPTLWTSRTPHATPATRS 318
TT G SKCLDAF++ALNQACDG+E RWYVSTLELQLVSLE CGACR Q VRV TPP+LW H T RS
Sbjct: 2 TTKGNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRS 78
BLAST of mRNA_E-fasciculatus_F_contig12193.1702.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.110e-21 Identity = 49/75 (65.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 97 GGSKCLDAFMLALNQACDGEEYRWYVSTLELQLVSLEFCGACRSAQLFDVRVDEHTPPTLWTSRTPHATPATRSR 321
G S+CLDAF++AL QA DG RWYVSTLELQLVSLEFCGACRSA FDV++ TP +LW+ R H T RSR
Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSR 99
BLAST of mRNA_E-fasciculatus_F_contig12193.1702.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 2.460e-21 Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query: 97 GGSKCLDAFMLALNQACDGEEYRWYVSTLELQLVSLEFCGACRSAQLFDVRVDEHTPPTLWTSRTPHATPATRSR 321
G S+CL AF++ALNQ C+G+E RWY STLELQLVSLEFCGACR VRVD TP +LW+ HAT RSR
Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSR 87
BLAST of mRNA_E-fasciculatus_F_contig12193.1702.1 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 3.570e-20 Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 97 GGSKCLDAFMLALNQACDGEEYRWYVSTLELQLVSLEFCGACRSAQLFDVRVDEHTP 267
G KCLDAF++ALNQ CDG E RWY STLELQLVSL+FCGACR VRVD TP
Sbjct: 5 GRRKCLDAFIVALNQTCDGRENRWYASTLELQLVSLKFCGACRRFPTLHVRVDRQTP 61
BLAST of mRNA_E-fasciculatus_F_contig12193.1702.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.250e-19 Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 103 SKCLDAFMLALNQACDGEEYRWYVSTLELQLVSLEFCGACRSAQLFDVRVDEHTPPTLWTSRTPHATPATRS 318
++CLDAF++AL+QAC+G E RWY STLELQL SL+ C ACR+ + V VD+ TP +LW+SRT P TRS
Sbjct: 9 TRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRS 80
BLAST of mRNA_E-fasciculatus_F_contig12193.1702.1 vs. uniprot
Match: A0A6H5JSE5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE5_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 4.550e-19 Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 97 GGSKCLDAFMLALNQACDGEEYRWYVSTLELQLVSLEFCGACRSAQLFDVRVDEHTPPTLWTSRTPHATPATR 315
G SKCLDAF++ +NQA DG + +WY STLELQLVSL FCGACRSA++ + VD PP+LW + TP R
Sbjct: 971 GKSKCLDAFIVTMNQAADGRKQQWYASTLELQLVSLAFCGACRSAKMLHLHVDRGKPPSLWFPHKSYTTPNKR 1043
BLAST of mRNA_E-fasciculatus_F_contig12193.1702.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.440e-17 Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 106 KCLDAFMLALNQACDGEEYRWYVSTLELQLVSLEFCGACRSAQLFDVRVDEHTPPTLWTSRTPHATPATRSR 321
+CLDAF++AL+Q +G E RWY STL+LQL SLEFCGACRS + V VD TPPTLW+ + T T +R
Sbjct: 8 RCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTAGTSTR 79
BLAST of mRNA_E-fasciculatus_F_contig12193.1702.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 1.420e-15 Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 91 TGGGSKCLDAFMLALNQACDGEEYRWYVSTLELQLVSLEFCGACRSAQLFDVRVDEHTPPTLWTSRTPHATPATRS 318
T G ++ DAF +AL+QAC+G E RWY ST ELQL SL+ C ACRS VRV TP +LW+ T A P T+S
Sbjct: 3 TEGYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQS 78 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12193.1702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12193.1702.1 >prot_E-fasciculatus_F_contig12193.1702.1 ID=prot_E-fasciculatus_F_contig12193.1702.1|Name=mRNA_E-fasciculatus_F_contig12193.1702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp PTDIAGLDCSRQSPTLGRTCYRWTAVTMTTTGGGSKCLDAFMLALNQACDback to top mRNA from alignment at E-fasciculatus_F_contig12193:558..3922- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12193.1702.1 ID=mRNA_E-fasciculatus_F_contig12193.1702.1|Name=mRNA_E-fasciculatus_F_contig12193.1702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3365bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12193:558..3922- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12193:558..3922- >mRNA_E-fasciculatus_F_contig12193.1702.1 ID=mRNA_E-fasciculatus_F_contig12193.1702.1|Name=mRNA_E-fasciculatus_F_contig12193.1702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12193:558..3922- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |