mRNA_E-fasciculatus_F_contig1218.1693.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1218.1693.1
Unique NamemRNA_E-fasciculatus_F_contig1218.1693.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1218.1693.1 vs. uniprot
Match: A0A6H5JSQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSQ9_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 7.670e-41
Identity = 79/131 (60.31%), Postives = 99/131 (75.57%), Query Frame = 2 
Query:  497 KGEARATPG*HEHTNAGLIASTSYVPPKDMGETKIHMQKPFFKGMETLTLRRIGPHFLLYSTEDIDVQYDRHLKCPYAWLDPGQFQIRHYRSKSLEEYVQRRAGTDSAYKRMQHTKEQLALEWRENSNRCG 889
            +G+    PG       G+I +  Y   +DMGE KIHMQKP F+ +E+LTLR+IGPHFLLY+TED+ +QY R+L CPY WLDP  F+IRHYRSKSLEEYVQRR G DSAY+  ++TKEQLALEW+E + +CG
Sbjct:  602 RGQVSKPPG-------GIIEN--YHEIEDMGEPKIHMQKPLFRALESLTLRKIGPHFLLYATEDVTLQYRRNLSCPYEWLDPDAFRIRHYRSKSLEEYVQRRTGADSAYRNKRYTKEQLALEWQETNAQCG 723
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BLAST of mRNA_E-fasciculatus_F_contig1218.1693.1 vs. uniprot
Match: D7G5V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V6_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.400e-31
Identity = 59/89 (66.29%), Postives = 74/89 (83.15%), Query Frame = 2 
Query:  623 KGMETLTLRRIGPHFLLYSTEDIDVQYDRHLKCPYAWLDPGQFQIRHYRSKSLEEYVQRRAGTDSAYKRMQHTKEQLALEWRENSNRCG 889
            K +E+LTLR+IGPHFLL +TED+ +QY R+L CPY WLDP  F+IRHYRSKSLEEYV RR G DSAY+  ++TKE+LALEW+E + +CG
Sbjct:  167 KALESLTLRKIGPHFLLSATEDVVLQYRRNLSCPYEWLDPDAFRIRHYRSKSLEEYVHRRTGADSAYRNKRYTKERLALEWQETNAQCG 255
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1218.1693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSQ9_9PHAE7.670e-4160.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5V6_ECTSI1.400e-3166.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1218contigE-fasciculatus_F_contig1218:17371..19079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1307
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1218.1693.1prot_E-fasciculatus_F_contig1218.1693.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1218 17954..18673 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927727.1222396-UTR-E-fasciculatus_F_contig1218:17370..179531622927727.1222396-UTR-E-fasciculatus_F_contig1218:17370..17953Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1218 17371..17953 +
1695995668.0537498-UTR-E-fasciculatus_F_contig1218:17370..179531695995668.0537498-UTR-E-fasciculatus_F_contig1218:17370..17953Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1218 17371..17953 +
1622927727.1634448-UTR-E-fasciculatus_F_contig1218:18673..190791622927727.1634448-UTR-E-fasciculatus_F_contig1218:18673..19079Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1218 18674..19079 +
1695995668.0789168-UTR-E-fasciculatus_F_contig1218:18673..190791695995668.0789168-UTR-E-fasciculatus_F_contig1218:18673..19079Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1218 18674..19079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927727.1383495-CDS-E-fasciculatus_F_contig1218:17953..180781622927727.1383495-CDS-E-fasciculatus_F_contig1218:17953..18078Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1218 17954..18078 +
1695995668.0617337-CDS-E-fasciculatus_F_contig1218:17953..180781695995668.0617337-CDS-E-fasciculatus_F_contig1218:17953..18078Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1218 17954..18078 +
1622927727.1519792-CDS-E-fasciculatus_F_contig1218:18480..186731622927727.1519792-CDS-E-fasciculatus_F_contig1218:18480..18673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1218 18481..18673 +
1695995668.0698102-CDS-E-fasciculatus_F_contig1218:18480..186731695995668.0698102-CDS-E-fasciculatus_F_contig1218:18480..18673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1218 18481..18673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1218.1693.1

>prot_E-fasciculatus_F_contig1218.1693.1 ID=prot_E-fasciculatus_F_contig1218.1693.1|Name=mRNA_E-fasciculatus_F_contig1218.1693.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=106bp
MGETKIHMQKPFFKGMETLTLRRIGPHFLLYSTEDIDVQYDRHLKCPYAW
LDPGQFQIRHYRSKSLEEYVQRRAGTDSAYKRMQHTKEQLALEWRENSNR
CGRSS*
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mRNA from alignment at E-fasciculatus_F_contig1218:17371..19079+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1218.1693.1 ID=mRNA_E-fasciculatus_F_contig1218.1693.1|Name=mRNA_E-fasciculatus_F_contig1218.1693.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1709bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1218:17371..19079+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGGTGTTCGAGGGAGTGAAGCCGTTTCTTGCACAACGTTTCGCAGAATC
GTCCTCTGACTAATTGTATCTCTTTCCGACATGCGCTCCACTCCGCTCTG
CTCCTTGAATATTCCCTCACATGGAACCCCGTATGGCCCTTGAAGGCCTC
TGTCGACGTTCAGTTTCTGATTGGCTTTTTCTGAAACCCTACTCGGGAGT
ATTTTAAGGCAAATATCTACGCAAATCTAAAACGATATCTATGATTTACG
AGGCAATTCTAACGTCACGTCGTACACCCCACACCCGCGGGGCGGGTGTA
AAAAGAGCCCCTTGCATATTGATTCTAGGGCTTATTGGGCAACGAGGAAG
GCTAGAGGCCTGTGGCTTGGTCGGTGAGCAAACACAGAATAGGCACGGCC
CTGGGGTTTCATTAACGTTTGCACGTCTGGGCGCGGCATCAACGATTTCG
GGGCTTATCTCGTGAGACAGCCCTTCTTTTGTGAGCCCGCTGGCTAAAAG
GAGAGGCCAGGGCTACCCCGGGCTAACATGAACACACAAATGCCGGTTTA
ATTGCTTCAACTTCTTACGTCCCGCCAAAGGACATGGGAGAAACGAAGAT
TCACATGCAGAAGCCGTTCTTCAAAGGGATGGAAACATTGACATTAAGGA
GGATAGGCCCGCACTTCTTGCTGTACTCAACTGAGGACATCGATGTGCAG
TACGACAGGTGATATCAACGTTAGATAGAGGGCCCTGGTCTTGTCGCGAC
TAACTCAGACTATCCTCAATTTTTGCTATACGATGGGGATTTGGCCAACA
CACATGTCCTAATTGCCATAACGCTCAGTAAATAGTTCGGTGCTAAACGG
TGTCCTAGGATTTAACGGTCTTCGTGGCATGGCCATGCTGCAGACTTGTC
GCGTGCCTCAAAGGCCCCGTACCCGGGTGTCCCACCTTGCACGGGGTGCA
CGTGACAAAAAGCCTCACGTAGATACTGCCTTGTTTCCTGAAGATCAGAG
CAGTTTGATTATGCCATAGCAGTATATCCATGGCTCAGATTTGCCTACCG
AATCACCCACCCCATGCTCACAGTACCTTGCTTTGTTCCGCGCGTCCGTG
ACCATGGCAGACACTTGAAATGTCCATATGCATGGCTTGACCCTGGCCAA
TTTCAGATTCGCCACTATCGAAGTAAATCCCTCGAGGAGTACGTGCAGAG
AAGGGCTGGTACGGACTCTGCGTATAAACGAATGCAACATACGAAAGAGC
AGCTGGCGCTGGAGTGGCGAGAAAATAGCAACCGGTGCGGGAGGTCAAGC
TGAATGCCGCGTGTTGTTGAAAAGTTATTATTTGTAAAGACATGCTAGCG
GACAGCGTGGCACATCCGGGCAGCTGCACAACACTCGTCCAACAATGGTA
CGGCGTGCCTTGTTTGAAATTTGGTGTTCATTGTGGAGCATGCCTGCGAC
TGCGACCTCTGGTGGCGTCCGCCTACCTCTGAGATGCTTTGCTAGTGCTT
GCTGGGTAACATTCCCACGCTACCTCAACCACACTACGGACTTGCCGGTG
TTGAGGAAAACCGTGTTTTTCTGCTTCTGGTATCCTGTTGATATCGTTTA
CATATTCTGCTCATGCGCTAGTTCATTGCCACTTGCAGCCCACCTTTGGT
AAACATGCGTGGAGTATCCGCCCGACGGAAGCCACACCTAAGCCGATCAT
ACAGATCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1218:17371..19079+

>mRNA_E-fasciculatus_F_contig1218.1693.1 ID=mRNA_E-fasciculatus_F_contig1218.1693.1|Name=mRNA_E-fasciculatus_F_contig1218.1693.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1218:17371..19079+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGAGAAACGAAGATTCACATGCAGAAGCCGTTCTTCAAAGGGATGGA
AACATTGACATTAAGGAGGATAGGCCCGCACTTCTTGCTGTACTCAACTG
AGGACATCGATGTGCAGTACGACAGATGGGAGAAACGAAGATTCACATGC
AGAAGCCGTTCTTCAAAGGGATGGAAACATTGACATTAAGGAGGATAGGC
CCGCACTTCTTGCTGTACTCAACTGAGGACATCGATGTGCAGTACGACAG
ACACTTGAAATGTCCATATGCATGGCTTGACCCTGGCCAATTTCAGATTC
GCCACTATCGAAGTAAATCCCTCGAGGAGTACGTGCAGAGAAGGGCTGGT
ACGGACTCTGCGTATAAACGAATGCAACATACGAAAGAGCAGCTGGCGCT
GGAGTGGCGAGAAAATAGCAACCGGTGCGGGAGGTCAAGCTGAACACTTG
AAATGTCCATATGCATGGCTTGACCCTGGCCAATTTCAGATTCGCCACTA
TCGAAGTAAATCCCTCGAGGAGTACGTGCAGAGAAGGGCTGGTACGGACT
CTGCGTATAAACGAATGCAACATACGAAAGAGCAGCTGGCGCTGGAGTGG
CGAGAAAATAGCAACCGGTGCGGGAGGTCAAGCTGA
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