mRNA_E-fasciculatus_F_contig12171.1688.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A836CLG1_9STRA (Complex1_LYR_dom domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG1_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.170e-18 Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1
Query: 10 ELLRQAESRLGFLRMATPRSKVGSKGSTRAVYRDGKVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIGPHGF 273
+LL QA+SRL +L++ TPR +G+ + VY+DGK++E + + +A SNW G NMDPDSV H+ L+RAGF +H V+G HGF
Sbjct: 46 QLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRP-RAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF 132
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A7S2S2D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2D5_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.190e-17 Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 10 ELLRQAESRLGFLRMATPRS--KVGSKGSTRAVYRDGKVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
+LL QAESRL FL+M TPR ++G + ST VY++GK ++ AR D+ARHSNW G NMDPDSV H+ L RAGF ++ G
Sbjct: 54 QLLAQAESRLSFLKMVTPREYHRLGGQQSTYYVYQNGKRLDDGSARTQDRARHSNWTGSNMDPDSVAKHQHLLNRAGFQDNSHAKG 139
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A1Z5K517_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K517_FISSO) HSP 1 Score: 64.7 bits (156), Expect = 3.080e-11 Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 16 LRQAESRLGFLRMATPRSKVGSKGSTRAVYRDGKVMEG--EEARKHDKARH-SNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
LR+AESRL FLRM + +S+ + R VYR+G+ +E E + K + SNWDG+N+DP+SV+ H+Q L RAGF N+ G
Sbjct: 50 LREAESRLSFLRMKSTKSQQRGTLAGRWVYRNGERLEADAEGTFRDSKGKVVSNWDGKNLDPESVKMHRQQLRRAGFVNNAHAKG 134
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A7S2HLR1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLR1_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.760e-9 Identity = 38/95 (40.00%), Postives = 51/95 (53.68%), Query Frame = 1
Query: 1 QAHELLRQAESRLGFLRMATPRSK-----VGSKGSTRAVY--RDGKVMEGEEARKHDKAR-HSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
Q LL +A ++ +LR+ TP+ K TR VY + K+ +G H K + HSNW G NMDP SV+ HKQ L+RAGF N+ G
Sbjct: 53 QIQPLLEEAGKKIAYLRIITPKDKWRGDSKSQSAETRWVYNGKGEKIQDGVGTPSHQKGKVHSNWSGGNMDPCSVKRHKQQLSRAGFVNNLHAKG 147
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A4D9CSL6_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSL6_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.780e-9 Identity = 38/97 (39.18%), Postives = 51/97 (52.58%), Query Frame = 1
Query: 10 ELLRQAESRLGFLRMATPR-------------SKVGSKGSTRAVYRDGKVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
EL+ QA S LG+LRM TP+ S G T VY+DG + E +K+ +SNWDG +MDPD+VR H+ L R GF ++ G
Sbjct: 57 ELMEQASSSLGYLRMITPKRWKSLHTGDSDAMGGAQSAGRTYIVYKDGGSVS-REPLPREKSAYSNWDGSSMDPDAVRRHQHQLRRMGFRDNTHAKG 152
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A448YU73_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU73_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 7.450e-9 Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1
Query: 16 LRQAESRLGFLRMATPRSKVGSKGSTRA--------VYRDGKVMEGEEA-RKHDKARH--SNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
L +AES+ FL+M TPR + S T VYR+G+ +E + A R DK SNWDG+N+DPDSV+ H L R GF N+ G
Sbjct: 59 LEEAESKRSFLKMVTPRERPSSSRRTEEGASPSRVWVYRNGERLERDGASRVRDKNGRVVSNWDGKNLDPDSVKQHNYQLKRMGFRNNAHAKG 151
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A6U3XLZ3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3XLZ3_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 3.420e-7 Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query: 13 LLRQAESRLGFLRMATPRSK-VGSKGSTRAVYRDG---KVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
L+ +A ++ +LR+ TP+ + K S R +Y DG KV G D SNW+G+N+DP SV+ H+Q L RAGF N+ G
Sbjct: 71 LIEEAGKKIAYLRIVTPKDRSTNQKSSERWIY-DGNGNKVFNGIGQLNRDGKAVSNWNGKNLDPCSVKRHRQQLGRAGFVNNLHAKG 156
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A6U5IKK5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5IKK5_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 2.440e-5 Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query: 13 LLRQAESRLGFLRMATPRSKVGS---KGSTRAVY-RDGKVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
LL +AE ++ +LRM TP+ + +GS R VY R+G+ G R A SNW G N+DP+SV+ H Q L R G+ ++ G
Sbjct: 66 LLLEAEKKMAYLRMITPKDRTRDGPQQGSVRYVYAREGEGGNGTVRR----APVSNWHGSNLDPESVKRHHQLLRRGGWRDNAHAKG 148
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A2R5GRX5_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRX5_9STRA) HSP 1 Score: 48.5 bits (114), Expect = 5.160e-5 Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 1 QAHELLRQAESRLGFLRMATPRSKVGSKGSTRAVYRDGKVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQ 252
+ ELL A+S+LG+L++ TPR+ + G R V RDGK +EG AR D+A H D ++D D++ H + R F + R+
Sbjct: 54 KVQELLNLAQSKLGYLKIVTPRTSRDATGKARLVLRDGKWVEGS-ARLMDRAPH---DKTSVDADALAKHNYLMERQHFMHRRR 133 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12171.1688.1 >prot_E-fasciculatus_F_contig12171.1688.1 ID=prot_E-fasciculatus_F_contig12171.1688.1|Name=mRNA_E-fasciculatus_F_contig12171.1688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp QAHELLRQAESRLGFLRMATPRSKVGSKGSTRAVYRDGKVMEGEEARKHDback to top mRNA from alignment at E-fasciculatus_F_contig12171:3457..3732- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12171.1688.1 ID=mRNA_E-fasciculatus_F_contig12171.1688.1|Name=mRNA_E-fasciculatus_F_contig12171.1688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12171:3457..3732- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12171:3457..3732- >mRNA_E-fasciculatus_F_contig12171.1688.1 ID=mRNA_E-fasciculatus_F_contig12171.1688.1|Name=mRNA_E-fasciculatus_F_contig12171.1688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12171:3457..3732- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |