mRNA_E-fasciculatus_F_contig12160.1682.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12160.1682.1
Unique NamemRNA_E-fasciculatus_F_contig12160.1682.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12160.1682.1 vs. uniprot
Match: D7G1X9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1X9_ECTSI)

HSP 1 Score: 345 bits (886), Expect = 1.750e-117
Identity = 164/173 (94.80%), Postives = 167/173 (96.53%), Query Frame = 1 
Query:    1 SAPRQDLCRIKWEPDPDQLPSNWFRGHIPDMIKCKMFDLWQADPEKNTAMALAKQFGLPYLDAQAILTLKIKAKENVETIEGYEIYPELEEIFTERKEAYIEELAQHYGQDIPFIYEHCPDIDKNDPSSWTNPREFKMGKLTEQDPSDKFDRPPLQSQDEVAEDLKYKRTNKV 519
            S P +DLCRIKWEPDPDQLPSNWFRGHIPDMIKCKMFDLWQADPEKNTAMALAKQFGLPYLD QAILTLKIKAKENVETIEGYEIYPE+EEIFTERKEAYIEELAQHYGQDIPFIYEHCPDIDKNDPSSWTNPREFK+GKLTEQD S KFDRPPLQSQDEVAEDLKYKRTNK 
Sbjct:  102 SDPHEDLCRIKWEPDPDQLPSNWFRGHIPDMIKCKMFDLWQADPEKNTAMALAKQFGLPYLDVQAILTLKIKAKENVETIEGYEIYPEIEEIFTERKEAYIEELAQHYGQDIPFIYEHCPDIDKNDPSSWTNPREFKLGKLTEQDRSSKFDRPPLQSQDEVAEDLKYKRTNKA 274
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12160.1682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1X9_ECTSI1.750e-11794.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12160contigE-fasciculatus_F_contig12160:263..3385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_003730.1
Exons4
Model size525
Cds size525
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12160.1682.1prot_E-fasciculatus_F_contig12160.1682.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12160 263..3385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.0293062-CDS-E-fasciculatus_F_contig12160:262..4221622927726.0293062-CDS-E-fasciculatus_F_contig12160:262..422Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12160 263..422 -
1695995667.4958804-CDS-E-fasciculatus_F_contig12160:262..4221695995667.4958804-CDS-E-fasciculatus_F_contig12160:262..422Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12160 263..422 -
1622927726.0453596-CDS-E-fasciculatus_F_contig12160:1025..11451622927726.0453596-CDS-E-fasciculatus_F_contig12160:1025..1145Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12160 1026..1145 -
1695995667.5048425-CDS-E-fasciculatus_F_contig12160:1025..11451695995667.5048425-CDS-E-fasciculatus_F_contig12160:1025..1145Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12160 1026..1145 -
1622927726.0552487-CDS-E-fasciculatus_F_contig12160:2008..21031622927726.0552487-CDS-E-fasciculatus_F_contig12160:2008..2103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12160 2009..2103 -
1695995667.513699-CDS-E-fasciculatus_F_contig12160:2008..21031695995667.513699-CDS-E-fasciculatus_F_contig12160:2008..2103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12160 2009..2103 -
1622927726.0697381-CDS-E-fasciculatus_F_contig12160:3235..33851622927726.0697381-CDS-E-fasciculatus_F_contig12160:3235..3385Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12160 3236..3385 -
1695995667.5219007-CDS-E-fasciculatus_F_contig12160:3235..33851695995667.5219007-CDS-E-fasciculatus_F_contig12160:3235..3385Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12160 3236..3385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12160.1682.1

>prot_E-fasciculatus_F_contig12160.1682.1 ID=prot_E-fasciculatus_F_contig12160.1682.1|Name=mRNA_E-fasciculatus_F_contig12160.1682.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=175bp
SAPRQDLCRIKWEPDPDQLPSNWFRGHIPDMIKCKMFDLWQADPEKNTAM
ALAKQFGLPYLDAQAILTLKIKAKENVETIEGYEIYPELEEIFTERKEAY
IEELAQHYGQDIPFIYEHCPDIDKNDPSSWTNPREFKMGKLTEQDPSDKF
DRPPLQSQDEVAEDLKYKRTNKVT*
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mRNA from alignment at E-fasciculatus_F_contig12160:263..3385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12160.1682.1 ID=mRNA_E-fasciculatus_F_contig12160.1682.1|Name=mRNA_E-fasciculatus_F_contig12160.1682.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3123bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12160:263..3385- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCGCTCCGCGGCAGGATCTGTGCCGCATCAAGTGGGAGCCCGACCCCGA
CCAGCTGCCTAGCAACTGGTTCCGAGGACACATCCCGGACATGATAAAGT
GCAAGATGTTCGACCTGTGGCAGGCGGACCCCGAGAAGAACACGGCGATG
GTGTGTGACGATTGACAAGGGGCTAGGGGCTTAGGGAGGGGTGAAGACAG
GCGGGCGTAGACGTATTTTGTTCAGACAAAAGAGAAGGCAGGATACAGAC
GTATTGCAGGCAGGCGGACACAAGCGTACGTCATACAAAGAAGAGACCCG
AATGAGATAGAGAGAGAAGGAAATAGAGATGCAGAGAGAGAGGGGGATAG
ATAGATAGAGAGAGAAAGAGATGGATAGATCGAGAGAGAGAGAGACGGAC
TAGTAGGCAAGAGATACCAGATATTTTGCCAGAGAGTCTATTAACAGCAG
TGGTAGGCAGACGACTATGCGGTGATGCCTGGTATCGTTGACAGCACTAA
CCGTAGGCTGGCTACCTCAGAGAAGAACACACGACGGTGCCCATAGTTTT
CGTCGTCGAACAAACCAACCCAACCGGCGGTGTCGTTTCCTGCAGAAACA
GGCTGTGGCATCGTCCGCCCGCATATCTTGTTTGCTTGGTCTGCCGTCGA
TGTGAGCGTACGCCTTCATGACCTTTTTCGGGCACACACATTTTTGAGCC
AACCGCAGCGGGTGCGGTGGCGCCACCGATTGTGGTGGTCCGCTGCGGAG
TGTAGTGGTGTCTACCCTCACACGGAGAGGCGGTCTGTCTGTCTTTGTAG
GCAACCAACATCCTTGTCTGTTGTCTTCGCAGGCAACCCACGGCGGTGTA
GTCCGGTCTTTGCTTTGCCGCCTTATGTGTTGATCCTGCTCTCGAGAAGT
ATGCCTCGGCGATGGAGCGGGGGCGGGGGGTATCAATCAGGGAAAGTGGA
AGGACGAAGCTCGTTTGGTTTGGTTTTGTTGCCGGCTCTCTATCCAGCGC
AAGGCTTGCCTGGTGCGTCCATCTTTTCCGTTTTTGTGTATTTCCTTTCT
TAACGCATGGGGTTGTTTGTGGCGTTGGTTCTTTGCTGTTTCCGTTTGCT
TGGAAGCTGGCGTGCTGGGGTTTTGCAGGCTTGTTGCTAATGCCTTGCCT
TCCCTCGTACCTCCGTGGTCCCTTTCGCGTGCCCCCCCCCCACCCCCGCC
AACTCTTACCTCGTATCGTGCGGTCGTTGCTCACAGCCTTTCCACCGCCC
GTGCGCCCCGCTGCTGATGCTTTTTTCGGCAGGCCCTGGCGAAGCAGTTC
GGATTGCCATACCTAGACGCGCAGGCCATCCTAACGCTCAAGATCAAGGC
TAAGGAAAACGTGGAGACGATTGAAGGGTGAGACAGACAGATTACTCCGT
CAGGCCATGGGCTCGGTACATAGTCTCAACACGCACAGGCTTGGGGGATG
CTTTGTTGCCTCTCGTTCGTCGCTGTCGCGTGGACCTCGTGTCGCCTCAT
GGACTCGAGACTTGTTCGTTTTTTTTTTTTTTTCCCTTGAGCCCAAACAC
ACGTGCGTCGTCAAAGGCTCGATAATAGACACCGAGAAGGGAAAGCTTCC
TGTGTGTATTGGCGCACAAGGAGCACGCCCGTGCTCGCTTTGTAAGTCCG
CATGGTGTGGGTGCGCGAAGCAGAGAGGTCTGTGCGTGTTGTAAGTCCCT
CTCTCCCTCCTCGAACGTTGATCCCCTCCGTTCATGTCCTCCCTCGTGTT
CGTCCGTGACGACAGCGATCGCCCTGTAACCACGCGTACACATTTACACA
CTACAGAAGCTTGTTTGCGTTCTTAAGTTGTGGTGGAAGTCCTGCACACT
GCACACGGTACCACAACAGCACCCACACGCGCGTCCCTGCCGTCATGTCT
TCATCTTAGACGGTTGCTGTCCTTTAGATCGTTTGTGTAGGCGCGATTTC
TTCACGACGAGCAAGGCTGCGACGAGATGGATCCATCTCGCGGTTGATCG
AGGAAGATGATCTCTTCCTGACCACCCATCCGTGCGCACCCACGTTTGCG
AATCTTCTGTTCTATTTCCTGGGGCGAGAGGATCACCCCCTAGCGTAGTT
GTTTGTTTTGCTCTGAGAAAAAAACGCCCAAACATGCGCGGAAAACCTTG
GTAACCCTCTGCCCCGCCCTGCTCCCCGGACGGCGGCGTTCGCTCCAAAC
GCTGGTCGGTTACAATGTATCCGATCGATCTATTCTACAGGTACGAGATC
TACCCGGAGCTGGAGGAGATCTTCACCGAGCGCAAGGAAGCCTACATCGA
GGAACTGGCGCAACACTACGGCCAGGACATACCCTTCATCTACGAGCACT
GCCCGGACATGTGAGGAAGGGAAAGGAAAGGTTCCGTTCTCGCGAGAGAG
AAACGCCTGCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTACCTTCC
AGTTTTTTTGTTTTTGTTTTGCTCAAGTCCCTTTGCCCTTGTTCCTCCAC
CTCCTCTTGGCTCGCGAGACAGGCGTGTCGTGTCGTGTCGTCGTGTTGTT
GTTTCCGGTCCGGTCCGGTCCCGTTCTGGGGATCGTTCCGTCTCTAAGTC
CCCCCCCCTGGAGTGTTGACATCGTTGGCCCGGTTGCTCGCCAGAATATA
CCGTCGCCTCCTTTTCCTTGCCCGGAATGTCTGCGAAGTGTTATTTTTCC
CTCTCGTCTCCTCGAGCGACCGCACGGAACAGCGCATGAAAAGGTCGGTT
TGTGCTACTTTGTCCGGCCTGCTGCCTCGTGCCGGAGGTGATTTTTAGCT
GGGCCATTTTTATTTTTATTTGGGGTGGTGTTCCGTGACGAAGCCAGCTG
GGTACAATAAGCAGGAGGTTATCTTGTAGTCGTTGTGCGTGGCGGGCTGT
CCACCGCATGGTGTTGACTTTTTTTTTTTTTGTCTTTTACTCTTTATTGT
TTCTTCTCGGCAGCGACAAGAACGACCCTAGCAGCTGGACGAACCCTAGA
GAGTTCAAGATGGGAAAACTTACCGAGCAGGACCCTAGCGACAAGTTCGA
CCGACCTCCCCTGCAGAGCCAGGACGAGGTTGCCGAAGACCTCAAATACA
AGCGCACCAACAAGGTGACCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12160:263..3385-

>mRNA_E-fasciculatus_F_contig12160.1682.1 ID=mRNA_E-fasciculatus_F_contig12160.1682.1|Name=mRNA_E-fasciculatus_F_contig12160.1682.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12160:263..3385- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCGCTCCGCGGCAGGATCTGTGCCGCATCAAGTGGGAGCCCGACCCCGA
CCAGCTGCCTAGCAACTGGTTCCGAGGACACATCCCGGACATGATAAAGT
GCAAGATGTTCGACCTGTGGCAGGCGGACCCCGAGAAGAACACGGCGATG
TCCGCTCCGCGGCAGGATCTGTGCCGCATCAAGTGGGAGCCCGACCCCGA
CCAGCTGCCTAGCAACTGGTTCCGAGGACACATCCCGGACATGATAAAGT
GCAAGATGTTCGACCTGTGGCAGGCGGACCCCGAGAAGAACACGGCGATG
GCCCTGGCGAAGCAGTTCGGATTGCCATACCTAGACGCGCAGGCCATCCT
AACGCTCAAGATCAAGGCTAAGGAAAACGTGGAGACGATTGAAGGGCCCT
GGCGAAGCAGTTCGGATTGCCATACCTAGACGCGCAGGCCATCCTAACGC
TCAAGATCAAGGCTAAGGAAAACGTGGAGACGATTGAAGGGTACGAGATC
TACCCGGAGCTGGAGGAGATCTTCACCGAGCGCAAGGAAGCCTACATCGA
GGAACTGGCGCAACACTACGGCCAGGACATACCCTTCATCTACGAGCACT
GCCCGGACATGTACGAGATCTACCCGGAGCTGGAGGAGATCTTCACCGAG
CGCAAGGAAGCCTACATCGAGGAACTGGCGCAACACTACGGCCAGGACAT
ACCCTTCATCTACGAGCACTGCCCGGACATCGACAAGAACGACCCTAGCA
GCTGGACGAACCCTAGAGAGTTCAAGATGGGAAAACTTACCGAGCAGGAC
CCTAGCGACAAGTTCGACCGACCTCCCCTGCAGAGCCAGGACGAGGTTGC
CGAAGACCTCAAATACAAGCGCACCAACAAGGTGACCTGACGACAAGAAC
GACCCTAGCAGCTGGACGAACCCTAGAGAGTTCAAGATGGGAAAACTTAC
CGAGCAGGACCCTAGCGACAAGTTCGACCGACCTCCCCTGCAGAGCCAGG
ACGAGGTTGCCGAAGACCTCAAATACAAGCGCACCAACAAGGTGACCTGA
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