mRNA_E-fasciculatus_F_contig12156.1677.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12156.1677.1
Unique NamemRNA_E-fasciculatus_F_contig12156.1677.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12156.1677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12156contigE-fasciculatus_F_contig12156:2584..2925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size343
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927725.1424897-CDS-E-fasciculatus_F_contig12156:2583..29251622927725.1424897-CDS-E-fasciculatus_F_contig12156:2583..2925Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12156 2584..2925 +
1695995667.0219018-CDS-E-fasciculatus_F_contig12156:2583..29251695995667.0219018-CDS-E-fasciculatus_F_contig12156:2583..2925Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12156 2584..2925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12156.1677.1prot_E-fasciculatus_F_contig12156.1677.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12156 2584..2925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12156.1677.1

>prot_E-fasciculatus_F_contig12156.1677.1 ID=prot_E-fasciculatus_F_contig12156.1677.1|Name=mRNA_E-fasciculatus_F_contig12156.1677.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp
CKAVHPLGSGKVTIGFLAVGLGVELVEGLLSYVYFSHPRARTGLMAAGGG
FEAAGIVVLHSWMVLSQAYWYSWYGYGSYVSLDQQLFLMKMHMMAVASAS
LGAMIEVLFFCSGT
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mRNA from alignment at E-fasciculatus_F_contig12156:2584..2925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12156.1677.1 ID=mRNA_E-fasciculatus_F_contig12156.1677.1|Name=mRNA_E-fasciculatus_F_contig12156.1677.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12156:2584..2925+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTAAGGCAGTGCACCCCCTCGGTTCCGGGAAGGTGACTATCGGGTTTCT
AGCGGTGGGGTTGGGTGTTGAATTGGTGGAGGGGTTGCTGAGCTACGTGT
ACTTCAGTCACCCTCGGGCACGAACCGGTCTGATGGCGGCTGGGGGTGGT
TTTGAGGCTGCGGGAATAGTCGTACTTCACTCGTGGATGGTATTATCGCA
AGCATACTGGTATAGTTGGTATGGGTATGGCAGTTATGTGTCGTTGGACC
AACAATTGTTCCTGATGAAAATGCACATGATGGCGGTGGCATCGGCTTCC
CTAGGGGCCATGATAGAGGTGTTGTTTTTTTGTTCAGGGACT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12156:2584..2925+

>mRNA_E-fasciculatus_F_contig12156.1677.1 ID=mRNA_E-fasciculatus_F_contig12156.1677.1|Name=mRNA_E-fasciculatus_F_contig12156.1677.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12156:2584..2925+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTAAGGCAGTGCACCCCCTCGGTTCCGGGAAGGTGACTATCGGGTTTCT
AGCGGTGGGGTTGGGTGTTGAATTGGTGGAGGGGTTGCTGAGCTACGTGT
ACTTCAGTCACCCTCGGGCACGAACCGGTCTGATGGCGGCTGGGGGTGGT
TTTGAGGCTGCGGGAATAGTCGTACTTCACTCGTGGATGGTATTATCGCA
AGCATACTGGTATAGTTGGTATGGGTATGGCAGTTATGTGTCGTTGGACC
AACAATTGTTCCTGATGAAAATGCACATGATGGCGGTGGCATCGGCTTCC
CTAGGGGCCATGATAGAGGTGTTGTTTTTTTGTTCAGGGACTTGTAAGGC
AGTGCACCCCCTCGGTTCCGGGAAGGTGACTATCGGGTTTCTAGCGGTGG
GGTTGGGTGTTGAATTGGTGGAGGGGTTGCTGAGCTACGTGTACTTCAGT
CACCCTCGGGCACGAACCGGTCTGATGGCGGCTGGGGGTGGTTTTGAGGC
TGCGGGAATAGTCGTACTTCACTCGTGGATGGTATTATCGCAAGCATACT
GGTATAGTTGGTATGGGTATGGCAGTTATGTGTCGTTGGACCAACAATTG
TTCCTGATGAAAATGCACATGATGGCGGTGGCATCGGCTTCCCTAGGGGC
CATGATAGAGGTGTTGTTTTTTTGTTCAGGGACT
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