mRNA_E-fasciculatus_F_contig12073.1618.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12073.1618.1
Unique NamemRNA_E-fasciculatus_F_contig12073.1618.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12073.1618.1 vs. uniprot
Match: D8LNL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL1_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.070e-34
Identity = 69/74 (93.24%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:   16 AAAAMAADHASANVA--GDHDDAGLVYEIAFPQPGALGLNLRTYLAEQPAGARLGLPPYGSLEVLDAQKFYLKA 231
            AAAA AADHASANVA  GDHDD GLVYEIAFPQ GALGLNLRTYLAEQPAGARLGLPPYGSLEVLDAQKFYLKA
Sbjct:   64 AAAAAAADHASANVAKAGDHDDTGLVYEIAFPQAGALGLNLRTYLAEQPAGARLGLPPYGSLEVLDAQKFYLKA 137
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BLAST of mRNA_E-fasciculatus_F_contig12073.1618.1 vs. uniprot
Match: A0A6H5K263_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K263_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 5.490e-33
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:   37 DHASANVA--GDHDDAGLVYEIAFPQPGALGLNLRTYLAEQPAGARLGLPPYGSLEVLDAQKFYLKA 231
            DH SANVA  GDHDDAGLVYEIAFPQPGALGLNLRTYLAEQPAGARLGLPPYGSLEVLDAQKFYLKA
Sbjct:  280 DHPSANVAKAGDHDDAGLVYEIAFPQPGALGLNLRTYLAEQPAGARLGLPPYGSLEVLDAQKFYLKA 346
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12073.1618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNL1_ECTSI1.070e-3493.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K263_9PHAE5.490e-3395.52AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12073contigE-fasciculatus_F_contig12073:68..1052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size232
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12073.1618.1prot_E-fasciculatus_F_contig12073.1618.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12073 95..1052 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927716.1966712-UTR-E-fasciculatus_F_contig12073:67..941622927716.1966712-UTR-E-fasciculatus_F_contig12073:67..94Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12073 68..94 +
1695995663.6561823-UTR-E-fasciculatus_F_contig12073:67..941695995663.6561823-UTR-E-fasciculatus_F_contig12073:67..94Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12073 68..94 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927716.214198-CDS-E-fasciculatus_F_contig12073:94..1601622927716.214198-CDS-E-fasciculatus_F_contig12073:94..160Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12073 95..160 +
1695995663.6641147-CDS-E-fasciculatus_F_contig12073:94..1601695995663.6641147-CDS-E-fasciculatus_F_contig12073:94..160Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12073 95..160 +
1622927716.2288294-CDS-E-fasciculatus_F_contig12073:914..10521622927716.2288294-CDS-E-fasciculatus_F_contig12073:914..1052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12073 915..1052 +
1695995663.672079-CDS-E-fasciculatus_F_contig12073:914..10521695995663.672079-CDS-E-fasciculatus_F_contig12073:914..1052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12073 915..1052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12073.1618.1

>prot_E-fasciculatus_F_contig12073.1618.1 ID=prot_E-fasciculatus_F_contig12073.1618.1|Name=mRNA_E-fasciculatus_F_contig12073.1618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=68bp
MAADHASANVAGDHDDAGLVYEIAFPQPGALGLNLRTYLAEQPAGARLGL
PPYGSLEVLDAQKFYLKA
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mRNA from alignment at E-fasciculatus_F_contig12073:68..1052+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12073.1618.1 ID=mRNA_E-fasciculatus_F_contig12073.1618.1|Name=mRNA_E-fasciculatus_F_contig12073.1618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=985bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12073:68..1052+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGCCGGCGACGGCAGCGGCGGCAGCAATGGCCGCGGACCACGCGTCCGC
CAACGTCGCTGGAGACCACGATGATGCCGGTCTAGTCTACGAGGTGTGTG
TTTTGTGTTGTGTGTGTGTGTGTGTTTTGGAATTGGGCATCGATCGACCG
CGCGCGATTTGCCGACTAACCAACGAAAATACGCCAGTCTTGTAGCGGCA
TAAACAAACACGAACACTTTCTAAACGTGTGTGTGCGGGTGTTTGTGGGT
CTAAGAACTGCTCATGTGATGATTGCGGTGCTTTGGGTGTATGTTCGATG
CCTCCACTTTTTTCGGCCACTCATGGAGTTTTCTTGAAACAAGAGCAGTG
TGCCCTTAAAGCGAGGAAATTGTGTTTCACCCCCCCCCCCCCCCCCCCCC
CCTGTTGTCAAATTCTGCGGGGGCACGACGCTCCCTAACACATGGTGCCC
ATAGAGCATGGAGAGCCCTTAATCTTGGGTGTCCTTAAAGCCGGGACGGC
TGCTGTATCGATCAGTACCTTCGTTGAACAGCCTCAAGCCTCAAGCCTCA
AGCCCCCACCAGAAAAAGCGGAGAGTCATGGACACTACTATTATTTTCAA
TGTTCCAGGCAGGTTTTTCTAAGCAAGAAAACATGCTGGATAAAGTATAG
AATTGGCGAAGTCGGGGGGTTAAACTTAGGGTCTGCTTTCCCCCTGCCGG
GTCTTTTTCCGTAGTAAAATTTCGTGTTCCTTGGGTAGACAGTCCAAAAA
GTTTGGAAGCAGAAAGATTCTGAAAAACCAGTCATGTTCAAAACGCCCCG
TAGTTTGCATAGCAAGTGTGATATCGACGAAATCCCTTGTTTCGCAGATA
GCTTTCCCGCAACCCGGGGCCCTGGGACTCAACCTCCGGACGTATCTCGC
GGAACAGCCCGCCGGCGCACGGCTCGGCCTTCCCCCGTACGGGAGCTTGG
AAGTGCTCGACGCTCAGAAATTCTACCTCAAGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12073:68..1052+

>mRNA_E-fasciculatus_F_contig12073.1618.1 ID=mRNA_E-fasciculatus_F_contig12073.1618.1|Name=mRNA_E-fasciculatus_F_contig12073.1618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=408bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12073:68..1052+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGCGGACCACGCGTCCGCCAACGTCGCTGGAGACCACGATGATGC
CGGTCTAGTCTACGAGATGGCCGCGGACCACGCGTCCGCCAACGTCGCTG
GAGACCACGATGATGCCGGTCTAGTCTACGAGATAGCTTTCCCGCAACCC
GGGGCCCTGGGACTCAACCTCCGGACGTATCTCGCGGAACAGCCCGCCGG
CGCACGGCTCGGCCTTCCCCCGTACGGGAGCTTGGAAGTGCTCGACGCTC
AGAAATTCTACCTCAAGGCGATAGCTTTCCCGCAACCCGGGGCCCTGGGA
CTCAACCTCCGGACGTATCTCGCGGAACAGCCCGCCGGCGCACGGCTCGG
CCTTCCCCCGTACGGGAGCTTGGAAGTGCTCGACGCTCAGAAATTCTACC
TCAAGGCG
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