mRNA_E-fasciculatus_F_contig12058.1605.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12058.1605.1
Unique NamemRNA_E-fasciculatus_F_contig12058.1605.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12058.1605.1 vs. uniprot
Match: D7FIT0_ECTSI (Chain A, Crystal Structure Of Human Phosphohistidine Phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT0_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.180e-31
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:   37 GGAEESSEPTILIRGLKSAEYHVEAAEPTMARLREAGADATITGGGRIKHSSKRRSIFIYG 219
            GGA+ESSEPTILIRGL+SA YH+EAAEPTMARLREAGADATITGGGRIKHSSKRRSIFIYG
Sbjct:   64 GGADESSEPTILIRGLQSATYHIEAAEPTMARLREAGADATITGGGRIKHSSKRRSIFIYG 124
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BLAST of mRNA_E-fasciculatus_F_contig12058.1605.1 vs. uniprot
Match: A0A6H5JGZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ6_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.580e-30
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:   37 GGAEESSEPTILIRGLKSAEYHVEAAEPTMARLREAGADATITGGGRIKHSSKRRSIFIYG 219
            GG +ESSEPTILIRGLKSA+YH+EAAEPTMARLREAGADAT+TGGGRIKHSSKRRSIFIYG
Sbjct:  176 GGTDESSEPTILIRGLKSAKYHIEAAEPTMARLREAGADATVTGGGRIKHSSKRRSIFIYG 236
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12058.1605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIT0_ECTSI2.180e-3193.44Chain A, Crystal Structure Of Human Phosphohistidi... [more]
A0A6H5JGZ6_9PHAE2.580e-3091.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12058contigE-fasciculatus_F_contig12058:2846..3067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionJanus
Ec32 orthologEc-20_003030.1
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927714.3745785-CDS-E-fasciculatus_F_contig12058:2845..30671622927714.3745785-CDS-E-fasciculatus_F_contig12058:2845..3067Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12058 2846..3067 +
1695995662.9430697-CDS-E-fasciculatus_F_contig12058:2845..30671695995662.9430697-CDS-E-fasciculatus_F_contig12058:2845..3067Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12058 2846..3067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12058.1605.1prot_E-fasciculatus_F_contig12058.1605.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12058 2846..3067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12058.1605.1

>prot_E-fasciculatus_F_contig12058.1605.1 ID=prot_E-fasciculatus_F_contig12058.1605.1|Name=mRNA_E-fasciculatus_F_contig12058.1605.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=74bp
RFFCLFSRTRSAGGAEESSEPTILIRGLKSAEYHVEAAEPTMARLREAGA
DATITGGGRIKHSSKRRSIFIYG*
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mRNA from alignment at E-fasciculatus_F_contig12058:2846..3067+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12058.1605.1 ID=mRNA_E-fasciculatus_F_contig12058.1605.1|Name=mRNA_E-fasciculatus_F_contig12058.1605.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=222bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12058:2846..3067+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTTTTTTTTGTTTGTTTTCGCGCACGCGAAGCGCAGGCGGTGCGGAAGA
AAGCTCGGAGCCAACTATTCTCATCCGGGGCCTGAAATCCGCCGAGTATC
ACGTCGAAGCGGCTGAGCCCACCATGGCGCGTTTGCGGGAGGCGGGGGCC
GACGCCACCATCACCGGCGGCGGGCGCATCAAGCACAGCAGCAAGAGACG
AAGCATATTCATCTATGGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12058:2846..3067+

>mRNA_E-fasciculatus_F_contig12058.1605.1 ID=mRNA_E-fasciculatus_F_contig12058.1605.1|Name=mRNA_E-fasciculatus_F_contig12058.1605.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12058:2846..3067+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTTTTTTTTGTTTGTTTTCGCGCACGCGAAGCGCAGGCGGTGCGGAAGA
AAGCTCGGAGCCAACTATTCTCATCCGGGGCCTGAAATCCGCCGAGTATC
ACGTCGAAGCGGCTGAGCCCACCATGGCGCGTTTGCGGGAGGCGGGGGCC
GACGCCACCATCACCGGCGGCGGGCGCATCAAGCACAGCAGCAAGAGACG
AAGCATATTCATCTATGGGTGACGTTTTTTTTGTTTGTTTTCGCGCACGC
GAAGCGCAGGCGGTGCGGAAGAAAGCTCGGAGCCAACTATTCTCATCCGG
GGCCTGAAATCCGCCGAGTATCACGTCGAAGCGGCTGAGCCCACCATGGC
GCGTTTGCGGGAGGCGGGGGCCGACGCCACCATCACCGGCGGCGGGCGCA
TCAAGCACAGCAGCAAGAGACGAAGCATATTCATCTATGGGTGA
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