mRNA_E-fasciculatus_F_contig12047.1595.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12047.1595.1
Unique NamemRNA_E-fasciculatus_F_contig12047.1595.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12047.1595.1 vs. uniprot
Match: A0A6H5KLB1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLB1_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.760e-8
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MIPNVSGDSGEDSLSNDGKRKTEMAKERNRLHAR 102
            +IP VSGDSGEDS+SND KRKTEMAKERNRLHAR
Sbjct:   33 IIPTVSGDSGEDSVSNDCKRKTEMAKERNRLHAR 66
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12047.1595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLB1_9PHAE1.760e-888.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12047contigE-fasciculatus_F_contig12047:3777..4109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927713.2301886-CDS-E-fasciculatus_F_contig12047:3776..41091622927713.2301886-CDS-E-fasciculatus_F_contig12047:3776..4109Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12047 3777..4109 +
1695995662.2142239-CDS-E-fasciculatus_F_contig12047:3776..41091695995662.2142239-CDS-E-fasciculatus_F_contig12047:3776..4109Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12047 3777..4109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12047.1595.1prot_E-fasciculatus_F_contig12047.1595.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12047 3777..4109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12047.1595.1

>prot_E-fasciculatus_F_contig12047.1595.1 ID=prot_E-fasciculatus_F_contig12047.1595.1|Name=mRNA_E-fasciculatus_F_contig12047.1595.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=111bp
MIPNVSGDSGEDSLSNDGKRKTEMAKERNRLHARCGVLVLYCIGTGCLLF
LFSFDLVSCVLCRPRPRPRYWLTHEETPVFCLLEVSFWWLSRPWQALPLF
FSADNITFDCV
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mRNA from alignment at E-fasciculatus_F_contig12047:3777..4109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12047.1595.1 ID=mRNA_E-fasciculatus_F_contig12047.1595.1|Name=mRNA_E-fasciculatus_F_contig12047.1595.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=333bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12047:3777..4109+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATACCCAACGTGTCCGGGGACAGCGGCGAAGACTCGTTAAGCAACGA
CGGAAAGCGCAAGACCGAGATGGCCAAGGAGCGCAATCGCCTTCACGCCA
GGTGCGGGGTGCTTGTATTGTATTGTATTGGGACGGGGTGCCTCTTGTTC
TTGTTCTCGTTTGATCTTGTCTCTTGTGTCTTGTGTCGACCTCGACCTCG
ACCTCGGTACTGGCTGACCCATGAAGAGACACCAGTCTTTTGTCTTTTGG
AAGTTTCGTTTTGGTGGCTGTCGCGACCCTGGCAAGCCCTCCCCCTCTTC
TTCTCTGCCGATAATATCACTTTTGATTGTGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12047:3777..4109+

>mRNA_E-fasciculatus_F_contig12047.1595.1 ID=mRNA_E-fasciculatus_F_contig12047.1595.1|Name=mRNA_E-fasciculatus_F_contig12047.1595.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12047:3777..4109+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATACCCAACGTGTCCGGGGACAGCGGCGAAGACTCGTTAAGCAACGA
CGGAAAGCGCAAGACCGAGATGGCCAAGGAGCGCAATCGCCTTCACGCCA
GGTGCGGGGTGCTTGTATTGTATTGTATTGGGACGGGGTGCCTCTTGTTC
TTGTTCTCGTTTGATCTTGTCTCTTGTGTCTTGTGTCGACCTCGACCTCG
ACCTCGGTACTGGCTGACCCATGAAGAGACACCAGTCTTTTGTCTTTTGG
AAGTTTCGTTTTGGTGGCTGTCGCGACCCTGGCAAGCCCTCCCCCTCTTC
TTCTCTGCCGATAATATCACTTTTGATTGTGTCATGATACCCAACGTGTC
CGGGGACAGCGGCGAAGACTCGTTAAGCAACGACGGAAAGCGCAAGACCG
AGATGGCCAAGGAGCGCAATCGCCTTCACGCCAGGTGCGGGGTGCTTGTA
TTGTATTGTATTGGGACGGGGTGCCTCTTGTTCTTGTTCTCGTTTGATCT
TGTCTCTTGTGTCTTGTGTCGACCTCGACCTCGACCTCGGTACTGGCTGA
CCCATGAAGAGACACCAGTCTTTTGTCTTTTGGAAGTTTCGTTTTGGTGG
CTGTCGCGACCCTGGCAAGCCCTCCCCCTCTTCTTCTCTGCCGATAATAT
CACTTTTGATTGTGTC
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