mRNA_E-fasciculatus_F_contig12047.1594.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12047.1594.1
Unique NamemRNA_E-fasciculatus_F_contig12047.1594.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12047.1594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12047contigE-fasciculatus_F_contig12047:520..1892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-14_001260.1
Hectar predicted targeting categoryother localisation
Exons2
Model size695
Cds size669
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12047.1594.1prot_E-fasciculatus_F_contig12047.1594.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12047 520..1866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927713.2676914-CDS-E-fasciculatus_F_contig12047:519..11261622927713.2676914-CDS-E-fasciculatus_F_contig12047:519..1126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12047 520..1126 -
1695995662.2346618-CDS-E-fasciculatus_F_contig12047:519..11261695995662.2346618-CDS-E-fasciculatus_F_contig12047:519..1126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12047 520..1126 -
1622927713.279951-CDS-E-fasciculatus_F_contig12047:1804..18661622927713.279951-CDS-E-fasciculatus_F_contig12047:1804..1866Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12047 1805..1866 -
1695995662.249504-CDS-E-fasciculatus_F_contig12047:1804..18661695995662.249504-CDS-E-fasciculatus_F_contig12047:1804..1866Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12047 1805..1866 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927713.291177-UTR-E-fasciculatus_F_contig12047:1866..18921622927713.291177-UTR-E-fasciculatus_F_contig12047:1866..1892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12047 1867..1892 -
1695995662.2598166-UTR-E-fasciculatus_F_contig12047:1866..18921695995662.2598166-UTR-E-fasciculatus_F_contig12047:1866..1892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12047 1867..1892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12047.1594.1

>prot_E-fasciculatus_F_contig12047.1594.1 ID=prot_E-fasciculatus_F_contig12047.1594.1|Name=mRNA_E-fasciculatus_F_contig12047.1594.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=223bp
MEDDVWSCVFSCDHPTKKRKRWTDGTLVFHRSSNKLQLRDESNTQTLASG
KAEGGGGGGGGGGAGCVTSLPQQLREGEELRVGRYAVQVGETRSGSGIGD
GSSEAVIATVGTTTAATGTGHTGQQTRLQKPTTGGAGAGIGMPMARRGKF
KAPARLDGGQPKNAGRVSQPREQEPGQRQGQKHHQEMKQGEFRRHRRPQP
LSPSTSLSSSTPSPAVHHGQQQQ
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mRNA from alignment at E-fasciculatus_F_contig12047:520..1892-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12047.1594.1 ID=mRNA_E-fasciculatus_F_contig12047.1594.1|Name=mRNA_E-fasciculatus_F_contig12047.1594.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1373bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12047:520..1892- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TAGCGTCACAGAGCAGCGTGGCCAGCATGGAAGATGACGTGTGGTCTTGC
GTTTTCTCCTGCGACCATCCCACGAAGAAGAGAAAACGGTACGCTACGCT
GGTCGCTTCAATGCCTGCAATGATGCATCTGTACTCTGTACTCTGTACTC
GAACATCAAGAGGCTACAACGTACATTTGTAGTACATTGTCATGTTGCCA
ATCGCAACAATTTGAATTTTGAATTTCGTGAGCAACATAGACTACTACGA
CTTACAGCGGGTAGACTAATATATGCGCCACTTTTCCGCACACTACCCCG
AGAACGGGTTGCCAAGCGAAGTCATGAAAAAATAACCCATCATCTGCATG
CAGGCTGTCGTTCGTACGTTCGCGTTCTGCAGCAACGCCTGGCTCGCCTT
GAAAATCATCGAAAGCCCCCGTAAGACGTAGCCAGCCATAATGCCATAAT
ATGCAGGTGTATGTAGTTATTATGTAGTTTAGTCTACACGTTGTCGGGGT
ATTCAGGGGTAGGGTGCCACCACAACCTGGTAGCCTACTGCAGCGCTATT
TAACAGCTTGTCGGGGGGACAACACAGCAGGGATATCGCCTCAAACTTCT
GGCCACACGTCTGCAGCAAAAACGCCACAATCATGTCTACTAGACTAATA
GCTGGGCAACACTCCGCGCCGCCAAGAAGCATCCCATCGACTTCTCCTTC
CCGTCGCCACCGTTTTCTCTTCCTACCCCCCCCCCTCTCCTCCGTTATCG
CCGTGTCTGTCCTCAGCTGGACCGACGGCACCCTCGTATTCCACCGCAGC
AGCAACAAGCTGCAGCTCCGCGACGAGTCCAACACCCAGACCCTCGCCTC
TGGAAAGGCAGAGGGCGGTGGCGGCGGTGGCGGCGGCGGGGGAGCGGGTT
GCGTTACGTCGTTGCCGCAGCAGCTGCGAGAGGGCGAGGAACTTCGAGTC
GGTCGGTACGCCGTCCAGGTCGGAGAAACCCGTAGCGGCAGCGGCATCGG
TGACGGTAGCAGCGAGGCGGTGATAGCGACCGTTGGCACCACCACTGCCG
CCACCGGGACCGGGCACACGGGACAGCAAACCCGACTTCAAAAGCCCACC
ACTGGTGGTGCTGGTGCTGGGATAGGGATGCCGATGGCCCGGAGAGGAAA
GTTCAAGGCGCCCGCAAGACTGGATGGAGGGCAGCCGAAGAACGCAGGGC
GCGTTTCACAGCCGAGGGAGCAGGAACCGGGGCAGCGGCAGGGCCAGAAG
CATCACCAGGAGATGAAGCAGGGGGAATTTCGTCGTCATCGTCGACCCCA
ACCATTGTCACCGTCGACTTCCTTGTCATCTTCGACGCCGTCCCCGGCGG
TTCACCATGGACAGCAGCAGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12047:520..1892-

>mRNA_E-fasciculatus_F_contig12047.1594.1 ID=mRNA_E-fasciculatus_F_contig12047.1594.1|Name=mRNA_E-fasciculatus_F_contig12047.1594.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1338bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12047:520..1892- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGATGACGTGTGGTCTTGCGTTTTCTCCTGCGACCATCCCACGAA
GAAGAGAAAACGATGGAAGATGACGTGTGGTCTTGCGTTTTCTCCTGCGA
CCATCCCACGAAGAAGAGAAAACGCTGGACCGACGGCACCCTCGTATTCC
ACCGCAGCAGCAACAAGCTGCAGCTCCGCGACGAGTCCAACACCCAGACC
CTCGCCTCTGGAAAGGCAGAGGGCGGTGGCGGCGGTGGCGGCGGCGGGGG
AGCGGGTTGCGTTACGTCGTTGCCGCAGCAGCTGCGAGAGGGCGAGGAAC
TTCGAGTCGGTCGGTACGCCGTCCAGGTCGGAGAAACCCGTAGCGGCAGC
GGCATCGGTGACGGTAGCAGCGAGGCGGTGATAGCGACCGTTGGCACCAC
CACTGCCGCCACCGGGACCGGGCACACGGGACAGCAAACCCGACTTCAAA
AGCCCACCACTGGTGGTGCTGGTGCTGGGATAGGGATGCCGATGGCCCGG
AGAGGAAAGTTCAAGGCGCCCGCAAGACTGGATGGAGGGCAGCCGAAGAA
CGCAGGGCGCGTTTCACAGCCGAGGGAGCAGGAACCGGGGCAGCGGCAGG
GCCAGAAGCATCACCAGGAGATGAAGCAGGGGGAATTTCGTCGTCATCGT
CGACCCCAACCATTGTCACCGTCGACTTCCTTGTCATCTTCGACGCCGTC
CCCGGCGGTTCACCATGGACAGCAGCAGCAGCTGGACCGACGGCACCCTC
GTATTCCACCGCAGCAGCAACAAGCTGCAGCTCCGCGACGAGTCCAACAC
CCAGACCCTCGCCTCTGGAAAGGCAGAGGGCGGTGGCGGCGGTGGCGGCG
GCGGGGGAGCGGGTTGCGTTACGTCGTTGCCGCAGCAGCTGCGAGAGGGC
GAGGAACTTCGAGTCGGTCGGTACGCCGTCCAGGTCGGAGAAACCCGTAG
CGGCAGCGGCATCGGTGACGGTAGCAGCGAGGCGGTGATAGCGACCGTTG
GCACCACCACTGCCGCCACCGGGACCGGGCACACGGGACAGCAAACCCGA
CTTCAAAAGCCCACCACTGGTGGTGCTGGTGCTGGGATAGGGATGCCGAT
GGCCCGGAGAGGAAAGTTCAAGGCGCCCGCAAGACTGGATGGAGGGCAGC
CGAAGAACGCAGGGCGCGTTTCACAGCCGAGGGAGCAGGAACCGGGGCAG
CGGCAGGGCCAGAAGCATCACCAGGAGATGAAGCAGGGGGAATTTCGTCG
TCATCGTCGACCCCAACCATTGTCACCGTCGACTTCCTTGTCATCTTCGA
CGCCGTCCCCGGCGGTTCACCATGGACAGCAGCAGCAG
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