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Homology
BLAST of mRNA_E-fasciculatus_F_contig12040.1589.1 vs. uniprot
Match: A0A6H5L0A8_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A8_9PHAE) HSP 1 Score: 382 bits (982), Expect = 1.110e-128 Identity = 246/294 (83.67%), Postives = 258/294 (87.76%), Query Frame = 1
Query: 1 ANTNESLLRLGTLVEKIDEKYFSKYVAAGSSLSYKDTLAAA-TTTDRKTGAGAASSKGGKVDKMTKEAEGLASTASSDVSKAADXXXXXXXXXXXXXXXXXXXXXXXXXXXVAESASSKEKGSSGTVKLDRPKEVQGVFDDIQKKAVEFYKTSPAAKSSSQGAEGGAAAPLSEAAKGLETKLESLLNESKFKPRKLKKDKKSQLVDAIKAMEESYPADANPLADPALSGQWSVVYSSSSRLLGRVIKGLLSGFFKTSDPRQVVDTGASSVLNACRARLRLTPLALRVAKKGSYR 879
ANTNESLL+LGTLVE IDE+YFSKYVA G++ +YKDTLAAA TTT TG G + SKGGK DKMT+EAEGLASTASSD SKA XXXXXXXXXXXXXXXXXXXXXX VAE +GSSGTVKLDRPKEVQGVFDD+QKKAV+FYKTS A S SQ AEGGA AP+SEAAK LETKLESLL+ES FKPRKLKKDKKSQLVDAIKAMEESYPA ANPLADPALSGQWSVVYSSSSRLLGRVIKGL SGFFKTSD RQVVDTGASSVLNACRARLRLTPLALRVAKKGSYR
Sbjct: 107 ANTNESLLKLGTLVENIDERYFSKYVAVGATPAYKDTLAAAATTTSGATGTGVSMSKGGKPDKMTEEAEGLASTASSDASKAXXXXXXXXXXXXXXXXXXXXXXXXDAKAAVAE------EGSSGTVKLDRPKEVQGVFDDVQKKAVDFYKTSSGAMSKSQDAEGGAVAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVDAIKAMEESYPAGANPLADPALSGQWSVVYSSSSRLLGRVIKGLFSGFFKTSDRRQVVDTGASSVLNACRARLRLTPLALRVAKKGSYR 394
BLAST of mRNA_E-fasciculatus_F_contig12040.1589.1 vs. uniprot
Match: D8LNG8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG8_ECTSI) HSP 1 Score: 286 bits (733), Expect = 1.050e-92 Identity = 203/248 (81.85%), Postives = 213/248 (85.89%), Query Frame = 1
Query: 1 ANTNESLLRLGTLVEKIDEKYFSKYVAAGSSLSYKDTLAAATTTDRKTGAG----AASSKGGKVDKMTKEAEGLASTASSDVSKAADXXXXXXXXXXXXXXXXXXXXXXXXXXXVAESASSKEKGSSGTVKLDRPKEVQGVFDDIQKKAVEFYKTSPAAKSSSQGAEGGAAAPLSEAAKGLETKLESLLNESKFKPRKLKKDKKSQLVDAIKAMEESYPADANPLADPALSGQWSVVYSSSSRLLGRV 732
ANTNESLL+LGTLVEKIDE+YFSKYV AG++ SYKDTLAAA A+SKGGK+DKMTKEAEGLAST SSDVSKA XXXXXXXXXXXXXXXXXXXXXXXXXXX AE E+GSSGTVKLDRPKEVQGVFDDIQKKAVEFYKTS A S SQ AEGGAAAP+SEAAK LETKLESLL+ES FKPRKLKKDKKSQLV AIKAMEESYPADANPLADPALSGQWSVVYSSSSR LGR+
Sbjct: 74 ANTNESLLKLGTLVEKIDERYFSKYVTAGANPSYKDTLAAAAXXXXXXXXXXXXXVAASKGGKLDKMTKEAEGLASTVSSDVSKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAE-----EEGSSGTVKLDRPKEVQGVFDDIQKKAVEFYKTSSGAMSKSQDAEGGAAAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVAAIKAMEESYPADANPLADPALSGQWSVVYSSSSRGLGRL 316
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-04_003920.1 |
| Exons | 6 |
| Model size | 879 |
| Cds size | 879 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12040.1589.1 >prot_E-fasciculatus_F_contig12040.1589.1 ID=prot_E-fasciculatus_F_contig12040.1589.1|Name=mRNA_E-fasciculatus_F_contig12040.1589.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=293bp
ANTNESLLRLGTLVEKIDEKYFSKYVAAGSSLSYKDTLAAATTTDRKTGA
GAASSKGGKVDKMTKEAEGLASTASSDVSKAADAVSKSVSASAGAAVETV
DKAAGDAKAAVAESASSKEKGSSGTVKLDRPKEVQGVFDDIQKKAVEFYK
TSPAAKSSSQGAEGGAAAPLSEAAKGLETKLESLLNESKFKPRKLKKDKK
SQLVDAIKAMEESYPADANPLADPALSGQWSVVYSSSSRLLGRVIKGLLS
GFFKTSDPRQVVDTGASSVLNACRARLRLTPLALRVAKKGSYR back to topmRNA from alignment at E-fasciculatus_F_contig12040:835..4131- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12040.1589.1 ID=mRNA_E-fasciculatus_F_contig12040.1589.1|Name=mRNA_E-fasciculatus_F_contig12040.1589.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3297bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12040:835..4131- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAACACGAACGAGAGTCTACTGAGGCTGGGGACCCTGGTGGAAAAGAT
CGACGAGAAGTACTTCAGCAAGTACGTCGCCGCGGGATCGTCTCTATCCT
ACAAGGACACGCTGGCGGCGGCGACGACGACGGACAGGAAGACGGGGGCG
GGGGCTGCGTCGTCCAAGGGTGAGAGTGGGAAGGGCGAGAGAGAGAGAGG
AGCACGTGACGGCGAGAGCGAGATGTGGAGAGCAATAGCTGCTTGTGGCA
GTATCGTAGAAGGCCCGTTTGCTGTCGTCGTTTTGCCCGTTCGTTGATGC
GCGCCGGTCGGTGGGTGTGGTGTTGTCCTGATTGCGATTCCCGGCGGTGT
GGTGTTGTCCTGATTGCGATTCCCGGCGGTGTGGTGTTGTCCTGATTGCG
ATTCCCGGCAGGTGGTAAGGTCGACAAGATGACGAAGGAAGCGGAGGGAT
TGGCGTCGACGGCGTCATCAGACGTCTCCAAGGCCGCCGATGCGGTGTCT
AAGGTGTGTGCGCGCTCTCGTTCTGCAGTGAGACGGCTATTGAGGGGGAG
GGGTTACGAGTAGGATTGAGGGCAGTGGTTAGGTAGGGTTGGAAAGCGGA
AGCGGGAGTGTTGAAGCAGTTCGTTGGAGAAGATGTTTGAAAATATCGAT
GTTGTTGTAAAATCGGAGCAGTGTTGCTCTATCGGAGGGGGAGTTGGCTC
GGCGTGCCCCACTTGAATGCGAGGGCTTCATTGCTGGTGGTCCGTCCGAG
ATAATGAAGGAATGTCGAGGAACGGACACGCAAGCCCAAACCGTCAGTTC
GCCCCCTGTCGTCGAACGCCTGTTTTTTAATACAAAAACCAGAGTGTGTC
CGCTTCGGCCGGTGCGGCAGTGGAGACGGTGGACAAGGCCGCGGGTGACG
CGAAGGCAGCGGTGGCAGAGAGCGCTTCATCGAAGGAGAAGGGGTCTTCT
GGAACGGTGAAGCTGGACAGGCCCAAGGAGGTGAAGTACTTTTTTTTGGA
TGGTACCATCATCCCTCCGAACTGCTATGCGTCCGCCTGGCTTTTTGCGT
ACGGTTTTCGCCCGCTCATGCCTCAATAGTGACTGACGGGTATATCGCCC
GCTCATGCCTCAATAGTGATTGACGGGTATATCGTGTGTATCGCCGCCTT
GTTTCACATATTGCACGTTGTACTAGTGTGTGTGTGTGTGTTTTCTTTTG
TTGCCCCAACCTACCAAGCGTGTGATTGTGCGAACATTTAAGAATAGTAT
TACGGCCAGTTGGCCTGTTGATACAACAACCTGCCGCGGAGGGATGGTTG
GTGTTGGCGGAGAGGGGGCGACTGGTTGTAGGATGATTGTGATTCTGGTA
GCGTGTGCGACCGGTAGCGTGTCCAGGACATGCGCGCGGCACAACGGACG
AGCCTACAGTACCTGCTTTGCAGGAGCAGGTCTGCTGGAATCCCTAGCAC
AGCAGCACTTTCGTCAATGTATGTTTTACAGTGTTGTTTCACCCTTGCCG
AATTTCCAACACATTCCCTGCTCCTCCAAAGCAGGTACTGCTGTAGGCTT
GTCCGTTGTGCCGCACGCATGCCCCCAACACGCTGCCGGTCGCACACGCG
GAATCACGATCATCCCACACCTGGTAGCCCCCTCTCCCCCAACACCAACC
ATCCCTCCGCAGCATGAAGTTACGGTTGTGTTTACTGTTCACGGCGTCTT
CTGCGGACGGTGGAGCACCTCGTGAAGGCTCTTGTTTCGGCGTTGGAGCA
CCTTTATTCTCCCCTTGCGTTTTTTTGTATTTTGCTCGAACCTTGAACCT
GGGTGAGGTTGGGTACCCACCCACTACTTACTACCTTGAGCCTAGACACT
CACACCCTACCCCCCCCGTCGTCGTCATGTTTTTTTTTTTTCTCTCGCCA
GGTGCAAGGTGTATTCGACGACATTCAGAAGAAGGCCGTCGAGTTCTACA
AGACCAGTCCCGCGGCCAAGTCTTCGTCGCAGGGCGCAGAGGGTGGAGCG
GCGGCCCCGTTGTCCGAGGCGGCGAAGGGTCTTGAGACCAAGCTTGAGGT
GCGTGCTCGAGAGCTCCACCGACCCCACTGCTGCTGTCGGGCGAAAAAAA
AAAGGAGAAAGGGAACAACGAGACGTTAATTTTTTTGGCGAATCAGTTCC
GTCCGTGTTAGTTTCGTTTCTTGTGCGTTGTATGGCGGCAAATACACGAG
ATGTTGTGTTTTGGTCTTCTTCGACACAGATTAGGGATTTAAACACCACA
GGGCCTGAGCACTGCGGTTGTTCTTCGGTATCCCTTACTGGTTTTGCTGG
GAATACTGCAGTGGTTGCCGCCCATATCTAAAAGTCAGCGCCCAAAGGTT
ACTGTTCAATTTGTCCTGCAATGCTGCCGACTTTCGCTTCGGACGCGTTT
TTTTTTACTTCGTGCGGGTGGATGTTGCATTCCAAATTCTACTACTGCTG
CTGATGCTCTTGTGCTGCGGTTGCTGTTGCCGCTGTTTTGGTTCCAGTCG
CTCCTCAACGAGAGCAAATTCAAGCCACGGAAGCTCAAGAAGGACAAGAA
GTCTCAGCTGGTGGACGCCATCAAGGCCATGGAGGAGTCCTACCCCGCCG
ACGCTAACCCCCTGGCAGACCCGGCGCTGTCGGGGCAGTGGAGCGTCGTG
TACTCGTCGAGCTCGCGGGTGAGAGTGAGAACTTGTCCTTTCCATTTTTT
TTTTTTGCGTCTATTCAATCTTGTTCAACGCGAGGCGCTTGGTTGCAGGT
ATATTTGTTTCCCCCCGTCGTCCAAGCCTAGACACGCGGACGGGCCAAAC
CGACAGTAGTGTCCGGGAAGTTGACGTAGTTTTATGTGTCACCGCCCACG
TTGTTTTAGGATAACTCAGCTTCGCTCACGTGTAAAAGGTAGGATGCTAA
TGTAACACGCGCGTCTCTTGTGTGGCAAGTGCATGCCTCCCTGCGCTGCT
GCAAGTCCAAACGAGTTATTTCCTCCCCGCCCGTCGCGTCGCGGGCGTGT
AGGGCTCGTGCGCGCACTAGTAGCCGATCGACGCCCTCGTACAAAAAGAG
CGACCGTCGGTTGTAAAAAAATCCCGTTTCTCGCGCCCCTGCCCTCTTGT
TCTTTCTCGTTTGACCCCCCCCCGCCTATCAAAAGCTTCTCGGGCGCGTC
ATCAAGGGTCTCCTTTCCGGGTTTTTCAAGACTTCGGATCCAAGGCAGGT
GGTGGACACGGGTGCTTCCAGCGTGCTGAACGCGTGCCGCGCCCGACTGA
GGTTGACGCCGCTGGCGCTGCGAGTGGCGAAGAAGGGGTCGTACAGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12040:835..4131- >mRNA_E-fasciculatus_F_contig12040.1589.1 ID=mRNA_E-fasciculatus_F_contig12040.1589.1|Name=mRNA_E-fasciculatus_F_contig12040.1589.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1758bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12040:835..4131- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAACACGAACGAGAGTCTACTGAGGCTGGGGACCCTGGTGGAAAAGAT
CGACGAGAAGTACTTCAGCAAGTACGTCGCCGCGGGATCGTCTCTATCCT
ACAAGGACACGCTGGCGGCGGCGACGACGACGGACAGGAAGACGGGGGCG
GGGGCTGCGTCGTCCAAGGGCGAACACGAACGAGAGTCTACTGAGGCTGG
GGACCCTGGTGGAAAAGATCGACGAGAAGTACTTCAGCAAGTACGTCGCC
GCGGGATCGTCTCTATCCTACAAGGACACGCTGGCGGCGGCGACGACGAC
GGACAGGAAGACGGGGGCGGGGGCTGCGTCGTCCAAGGGTGGTAAGGTCG
ACAAGATGACGAAGGAAGCGGAGGGATTGGCGTCGACGGCGTCATCAGAC
GTCTCCAAGGCCGCCGATGCGGTGTCTAAGGTGGTAAGGTCGACAAGATG
ACGAAGGAAGCGGAGGGATTGGCGTCGACGGCGTCATCAGACGTCTCCAA
GGCCGCCGATGCGGTGTCTAAGAGTGTGTCCGCTTCGGCCGGTGCGGCAG
TGGAGACGGTGGACAAGGCCGCGGGTGACGCGAAGGCAGCGGTGGCAGAG
AGCGCTTCATCGAAGGAGAAGGGGTCTTCTGGAACGGTGAAGCTGGACAG
GCCCAAGGAGAGTGTGTCCGCTTCGGCCGGTGCGGCAGTGGAGACGGTGG
ACAAGGCCGCGGGTGACGCGAAGGCAGCGGTGGCAGAGAGCGCTTCATCG
AAGGAGAAGGGGTCTTCTGGAACGGTGAAGCTGGACAGGCCCAAGGAGGT
GCAAGGTGTATTCGACGACATTCAGAAGAAGGCCGTCGAGTTCTACAAGA
CCAGTCCCGCGGCCAAGTCTTCGTCGCAGGGCGCAGAGGGTGGAGCGGCG
GCCCCGTTGTCCGAGGCGGCGAAGGGTCTTGAGACCAAGCTTGAGGTGCA
AGGTGTATTCGACGACATTCAGAAGAAGGCCGTCGAGTTCTACAAGACCA
GTCCCGCGGCCAAGTCTTCGTCGCAGGGCGCAGAGGGTGGAGCGGCGGCC
CCGTTGTCCGAGGCGGCGAAGGGTCTTGAGACCAAGCTTGAGTCGCTCCT
CAACGAGAGCAAATTCAAGCCACGGAAGCTCAAGAAGGACAAGAAGTCTC
AGCTGGTGGACGCCATCAAGGCCATGGAGGAGTCCTACCCCGCCGACGCT
AACCCCCTGGCAGACCCGGCGCTGTCGGGGCAGTGGAGCGTCGTGTACTC
GTCGAGCTCGCGGTCGCTCCTCAACGAGAGCAAATTCAAGCCACGGAAGC
TCAAGAAGGACAAGAAGTCTCAGCTGGTGGACGCCATCAAGGCCATGGAG
GAGTCCTACCCCGCCGACGCTAACCCCCTGGCAGACCCGGCGCTGTCGGG
GCAGTGGAGCGTCGTGTACTCGTCGAGCTCGCGGCTTCTCGGGCGCGTCA
TCAAGGGTCTCCTTTCCGGGTTTTTCAAGACTTCGGATCCAAGGCAGGTG
GTGGACACGGGTGCTTCCAGCGTGCTGAACGCGTGCCGCGCCCGACTGAG
GTTGACGCCGCTGGCGCTGCGAGTGGCGAAGAAGGGGTCGTACAGGCTTC
TCGGGCGCGTCATCAAGGGTCTCCTTTCCGGGTTTTTCAAGACTTCGGAT
CCAAGGCAGGTGGTGGACACGGGTGCTTCCAGCGTGCTGAACGCGTGCCG
CGCCCGACTGAGGTTGACGCCGCTGGCGCTGCGAGTGGCGAAGAAGGGGT
CGTACAGG back to top
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