mRNA_E-fasciculatus_F_contig1201.1570.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1201.1570.1
Unique NamemRNA_E-fasciculatus_F_contig1201.1570.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1201.1570.1 vs. uniprot
Match: A0A6H5JSE0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSE0_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.100e-23
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:  358 MSTPVGKSTSQATNGNRSDVRSGSSGGADKTAPEDDTPNLTEIAGERDLLKSRVFELENRLRETEEELEYYFEF 579
            MS P GKSTSQATNG+   VRS   GGADKTA EDDT NLT++  ERDLLKSRVFELENRLRETEEELEYYFEF
Sbjct:    1 MSVPPGKSTSQATNGSSRGVRSSGGGGADKTAAEDDTLNLTQVVEERDLLKSRVFELENRLRETEEELEYYFEF 74
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1201.1570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSE0_9PHAE1.100e-2379.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1201contigE-fasciculatus_F_contig1201:17043..17654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size614
Cds size255
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927710.4761856-UTR-E-fasciculatus_F_contig1201:17042..173991622927710.4761856-UTR-E-fasciculatus_F_contig1201:17042..17399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1201 17043..17399 +
1695995661.0653882-UTR-E-fasciculatus_F_contig1201:17042..173991695995661.0653882-UTR-E-fasciculatus_F_contig1201:17042..17399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1201 17043..17399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927710.4923828-CDS-E-fasciculatus_F_contig1201:17399..176541622927710.4923828-CDS-E-fasciculatus_F_contig1201:17399..17654Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1201 17400..17654 +
1695995661.0747812-CDS-E-fasciculatus_F_contig1201:17399..176541695995661.0747812-CDS-E-fasciculatus_F_contig1201:17399..17654Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1201 17400..17654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1201.1570.1prot_E-fasciculatus_F_contig1201.1570.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1201 17400..17654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1201.1570.1

>prot_E-fasciculatus_F_contig1201.1570.1 ID=prot_E-fasciculatus_F_contig1201.1570.1|Name=mRNA_E-fasciculatus_F_contig1201.1570.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=85bp
MSTPVGKSTSQATNGNRSDVRSGSSGGADKTAPEDDTPNLTEIAGERDLL
KSRVFELENRLRETEEELEYYFEFFKKTKRGGRAS
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mRNA from alignment at E-fasciculatus_F_contig1201:17043..17654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1201.1570.1 ID=mRNA_E-fasciculatus_F_contig1201.1570.1|Name=mRNA_E-fasciculatus_F_contig1201.1570.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1201:17043..17654+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCACCGACTCCCTCTTTCGGCGTGAAGTAAGCCCCGCCACGCCCCCCG
CCGCAGATACTTCGCATCCCTCTCAAGGAGCATTTGATGAGTCTTAGCAA
CGGGCGTGCGGCGGCGGGCTGAGTTTTCATCTGGAGGACAAGTTGGACCG
CGTGTGTGCCCGAAGGGCAACTACACTGCTGTACAATAACTTTCCGTGAA
GCAGGCTCTCTCTCGGGGCTTTGCATCGCGTAGGCACAACGCATTCGCTA
TTCTTGGTGTGCTTCATCGCCCACCACTGCCGGGTCGCCTCTCACAAACC
GACCAGTTTGGCCTCTTGGTATAGGCCGCTCGCGTTCTCGGGGAGCCATC
CCGACACATGTCGACACCAGTGGGTAAGTCGACATCACAGGCAACAAACG
GGAACCGCAGCGATGTACGCAGCGGGAGCAGCGGCGGTGCGGACAAAACT
GCTCCTGAAGATGACACGCCTAACCTCACAGAGATTGCCGGAGAGAGGGA
CCTGCTCAAGTCCCGGGTGTTTGAGCTGGAGAACCGCTTGCGAGAGACGG
AGGAGGAGCTCGAGTACTACTTCGAGTTCTTCAAGAAGACGAAAAGAGGA
GGCCGTGCTTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1201:17043..17654+

>mRNA_E-fasciculatus_F_contig1201.1570.1 ID=mRNA_E-fasciculatus_F_contig1201.1570.1|Name=mRNA_E-fasciculatus_F_contig1201.1570.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=510bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1201:17043..17654+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGACACCAGTGGGTAAGTCGACATCACAGGCAACAAACGGGAACCG
CAGCGATGTACGCAGCGGGAGCAGCGGCGGTGCGGACAAAACTGCTCCTG
AAGATGACACGCCTAACCTCACAGAGATTGCCGGAGAGAGGGACCTGCTC
AAGTCCCGGGTGTTTGAGCTGGAGAACCGCTTGCGAGAGACGGAGGAGGA
GCTCGAGTACTACTTCGAGTTCTTCAAGAAGACGAAAAGAGGAGGCCGTG
CTTCCATGTCGACACCAGTGGGTAAGTCGACATCACAGGCAACAAACGGG
AACCGCAGCGATGTACGCAGCGGGAGCAGCGGCGGTGCGGACAAAACTGC
TCCTGAAGATGACACGCCTAACCTCACAGAGATTGCCGGAGAGAGGGACC
TGCTCAAGTCCCGGGTGTTTGAGCTGGAGAACCGCTTGCGAGAGACGGAG
GAGGAGCTCGAGTACTACTTCGAGTTCTTCAAGAAGACGAAAAGAGGAGG
CCGTGCTTCC
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