mRNA_E-fasciculatus_F_contig12.1551.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A6H5L4K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4K4_9PHAE) HSP 1 Score: 172 bits (435), Expect = 2.340e-50 Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 1
Query: 1 GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSRG 288
GGFAESFRF+STYP++ +HVV LS+TSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLV+SAV+FGHLLG GCW GA VVFGTIGYRIRRKMQSRG
Sbjct: 297 GGFAESFRFMSTYPAAFFHVVILSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVLSAVMFGHLLGLGCWVGAFVVFGTIGYRIRRKMQSRG 392
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A6S9KLE1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KLE1_HETAK) HSP 1 Score: 117 bits (293), Expect = 2.700e-29 Identity = 61/99 (61.62%), Postives = 77/99 (77.78%), Query Frame = 1
Query: 1 GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKM---QSRG 288
G F ++ F++ P ++ HV+ LSITS TGQLFIFYTIKKFGP+IFTIIMTTRQM+S+V+S +FGH LG AGA+VVF T+GYRIRR+ QS+G
Sbjct: 308 GEFFQTLTFMADNPEAVSHVLVLSITSCTGQLFIFYTIKKFGPVIFTIIMTTRQMLSMVLSCFLFGHALGLLAVAGAIVVFATLGYRIRRQYLAKQSKG 406
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: F0YSJ6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YSJ6_AURAN) HSP 1 Score: 111 bits (277), Expect = 2.930e-28 Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1
Query: 1 GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQS 282
G ES FL+T ++L +V+TLS TSATGQLFIFYTIKKFGPI+FTI+MTTRQM+SL VS +VFGH LG G G VVFG + YR +RK +
Sbjct: 141 GEMGESLAFLATNEAALVNVLTLSFTSATGQLFIFYTIKKFGPIVFTIMMTTRQMLSLTVSCLVFGHSLGPGAVLGTGVVFGVLFYRTKRKYDA 234
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A836CQP3_9STRA (Solute carrier family 35, member B1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQP3_9STRA) HSP 1 Score: 114 bits (284), Expect = 3.180e-28 Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 1
Query: 1 GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSR 285
G S F+ +P +L H+ TLSITSATGQLFIFYTIK FGPIIFTIIMT RQM SLV+S + FGH+LG G VVFGT+GYRI+RK R
Sbjct: 275 GELFSSIAFVMDHPVALKHLATLSITSATGQLFIFYTIKNFGPIIFTIIMTCRQMFSLVISTLWFGHVLGLLSLLGTTVVFGTLGYRIKRKYDGR 369
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A8J2SJ07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ07_9STRA) HSP 1 Score: 112 bits (280), Expect = 8.060e-28 Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1
Query: 1 GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQS 282
G S FL+ P++L +V+TLS+TSATGQLFIFYTIKKFGPI+FTI+MTTRQM+SL VS VVFGH LG G G VVFG + YR +RK +
Sbjct: 246 GEMGLSLAFLAANPAALANVLTLSLTSATGQLFIFYTIKKFGPIVFTIMMTTRQMLSLTVSCVVFGHKLGGGAVLGTCVVFGVLFYRTKRKYDA 339
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A7S2MHE4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHE4_9STRA) HSP 1 Score: 106 bits (265), Expect = 3.040e-27 Identity = 51/88 (57.95%), Postives = 69/88 (78.41%), Query Frame = 1
Query: 22 RFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSR 285
+FL P+SL + + ++TSA+GQ+FIFYTIK FGP++FTIIMTTRQM+S+V+S ++FGH L +AGALVVFG + YRIRRK +
Sbjct: 69 QFLIQNPNSLVYNIITAVTSASGQMFIFYTIKSFGPVVFTIIMTTRQMISMVISTILFGHQLAAASFAGALVVFGAVFYRIRRKTLEK 156
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A7S2V172_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V172_9STRA) HSP 1 Score: 110 bits (275), Expect = 8.330e-27 Identity = 54/91 (59.34%), Postives = 72/91 (79.12%), Query Frame = 1
Query: 13 ESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSR 285
+S RFL P +L +++TLS+ SATGQLFI+YTIKKFGPI+FTIIMTTRQM+S+V+S +V+ H + GAL+VF TIGYRIRR+ ++
Sbjct: 289 KSLRFLGRNPEALVNILTLSVCSATGQLFIYYTIKKFGPIVFTIIMTTRQMLSMVISCIVYDHPMSLPSVFGALIVFTTIGYRIRRQYNAK 379
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A7S2WFB0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFB0_9STRA) HSP 1 Score: 110 bits (274), Expect = 8.680e-27 Identity = 51/88 (57.95%), Postives = 70/88 (79.55%), Query Frame = 1
Query: 22 RFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSR 285
FLS +P +L++ + +ITSATGQLFIFYTIK+FGP++FTIIMTTRQM+S+++S ++FGH L G + GA +VFG + YRIRRK +
Sbjct: 271 EFLSYHPQALWYNIITAITSATGQLFIFYTIKQFGPVVFTIIMTTRQMISMIISTLLFGHSLSSGSYVGAFLVFGAVFYRIRRKQLDK 358
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A7S2MHM3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHM3_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.660e-25 Identity = 51/88 (57.95%), Postives = 69/88 (78.41%), Query Frame = 1
Query: 22 RFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSR 285
+FL P+SL + + ++TSA+GQ+FIFYTIK FGP++FTIIMTTRQM+S+V+S ++FGH L +AGALVVFG + YRIRRK +
Sbjct: 266 QFLIQNPNSLVYNIITAVTSASGQMFIFYTIKSFGPVVFTIIMTTRQMISMVISTILFGHQLAAASFAGALVVFGAVFYRIRRKTLEK 353
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A812Z441_SYMMI (Slc35b2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z441_SYMMI) HSP 1 Score: 100 bits (249), Expect = 1.980e-25 Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 1
Query: 22 RFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSRG 288
FL P++L + + +ITSATGQ FIFYTIK+FGPI+FT+IMTTRQM+S+V+S+V FGH + + GA +VFG + Y +RR+M G
Sbjct: 27 EFLLVNPTALLYNIVTAITSATGQFFIFYTIKEFGPIVFTVIMTTRQMLSMVLSSVFFGHKMSIYSYLGATLVFGAVFYSVRRQMNKHG 115 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12.1551.1 >prot_E-fasciculatus_F_contig12.1551.1 ID=prot_E-fasciculatus_F_contig12.1551.1|Name=mRNA_E-fasciculatus_F_contig12.1551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=97bp GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMback to top mRNA from alignment at E-fasciculatus_F_contig12:211..1302+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12.1551.1 ID=mRNA_E-fasciculatus_F_contig12.1551.1|Name=mRNA_E-fasciculatus_F_contig12.1551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1092bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:211..1302+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12:211..1302+ >mRNA_E-fasciculatus_F_contig12.1551.1 ID=mRNA_E-fasciculatus_F_contig12.1551.1|Name=mRNA_E-fasciculatus_F_contig12.1551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:211..1302+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |