mRNA_E-fasciculatus_F_contig11996.1550.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11996.1550.1 vs. uniprot
Match: D8LRT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRT3_ECTSI) HSP 1 Score: 241 bits (615), Expect = 5.480e-78 Identity = 120/134 (89.55%), Postives = 120/134 (89.55%), Query Frame = 1
Query: 1 SPDGTCLLTSSDDTVLRVFE---------KRQAPSVTVDDAASSAHSHFTDDWSPCLYSVEGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAGDKIFAG 375
SPDGTCLLTSSDDTVLRVFE KRQAPS TVDDAASSAH TDDWSPCLYSVEGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAG KIFAG
Sbjct: 69 SPDGTCLLTSSDDTVLRVFEVPGHALRGEKRQAPSDTVDDAASSAHFDITDDWSPCLYSVEGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAGGKIFAG 202
BLAST of mRNA_E-fasciculatus_F_contig11996.1550.1 vs. uniprot
Match: UPI00192EEB6A (telomerase Cajal body protein 1-like n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EEB6A) HSP 1 Score: 146 bits (368), Expect = 1.650e-41 Identity = 71/126 (56.35%), Postives = 94/126 (74.60%), Query Frame = 1
Query: 1 SPDGTCLLTSSDDTVLRVFEKRQAPSVTVDDAASSAHSHFTDD-WSPCLYSVEGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAGDKIFAG 375
SPDGTCLL+SS+D LRVF P DD+A+++ S+ +D ++ L EGE+VYDF WYP+MS+++P + VF ST+RDHP+H+WDA TG LR TYRAYD +DE+ AA S+ FN AG+KIFAG
Sbjct: 67 SPDGTCLLSSSEDNTLRVFA---LPEYGGDDSANASSSNLDEDSFAANLVVTEGESVYDFCWYPYMSATDPVSCVFASTTRDHPIHVWDATTGQLRCTYRAYDGVDEITAAFSIAFNPAGNKIFAG 189
BLAST of mRNA_E-fasciculatus_F_contig11996.1550.1 vs. uniprot
Match: A0A8K1FL14_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FL14_PYTOL) HSP 1 Score: 148 bits (373), Expect = 2.360e-40 Identity = 70/125 (56.00%), Postives = 88/125 (70.40%), Query Frame = 1
Query: 1 SPDGTCLLTSSDDTVLRVFEKRQAPSVTVDDAASSAHSHFTDDWSPCLYSVEGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAGDKIFAG 375
SPDG C+LTSS+D +LR+FE + V+ + L + EG VYD+AWYP+M+S +PAT +F+STSRDHP+HMWDA+TG LRATYRA+DHLDE+ AA SV FN GDKIFAG
Sbjct: 85 SPDGLCMLTSSEDHILRIFELPSEENADVEQLS-------------ILQAKEGGAVYDYAWYPYMTSQDPATCIFISTSRDHPIHMWDAYTGQLRATYRAFDHLDEITAAFSVAFNATGDKIFAG 196
BLAST of mRNA_E-fasciculatus_F_contig11996.1550.1 vs. uniprot
Match: K3WVC6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVC6_GLOUD) HSP 1 Score: 145 bits (365), Expect = 2.120e-39 Identity = 73/128 (57.03%), Postives = 87/128 (67.97%), Query Frame = 1
Query: 1 SPDGTCLLTSSDDTVLRVFEKR---QAPSVTVDDAASSAHSHFTDDWSPCLYSVEGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAGDKIFAG 375
SPDG C+LT+S+D VLR+FE QAP+ T L + EG VYDFAWYP M+S P + +FVSTSRD P+HMWDA+TG+LRATYRAYDHLDE+ AANS+ FNT GDKIF G
Sbjct: 48 SPDGLCMLTNSEDHVLRLFEMSDDVQAPAAT-----------------SILQAKEGGAVYDFAWYPFMNSQVPESCIFVSTSRDQPVHMWDAYTGDLRATYRAYDHLDEIAAANSIAFNTTGDKIFCG 158
BLAST of mRNA_E-fasciculatus_F_contig11996.1550.1 vs. uniprot
Match: A0A6P5NDW7_ARADU (telomerase Cajal body protein 1 isoform X2 n=2 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P5NDW7_ARADU) HSP 1 Score: 142 bits (357), Expect = 3.530e-39 Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 1
Query: 1 SPDGTCLLTSSDDTVLRVFEKRQAPSVTVDDAASSAHSHFTDDWSPCLYSVEGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAGDKIFAG 375
SPDG+C LT+SDD LR+F + T+ DA+ S D ++ L EGE ++DF WYP+MS+S+P T+VF +T+RDHP+H+WDA G LR TYRAYD++DE+ AA SV FN AG KIFAG
Sbjct: 58 SPDGSCFLTTSDDNTLRIFTLPDPEAATLVDASQSDD----DSFAASLVMSEGEPIHDFCWYPYMSASDPVTNVFATTTRDHPIHLWDATLGQLRCTYRAYDNMDEITAAFSVAFNPAGTKIFAG 178
BLAST of mRNA_E-fasciculatus_F_contig11996.1550.1 vs. uniprot
Match: A0A8B8NCY5_9MYRT (telomerase Cajal body protein 1-like n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8NCY5_9MYRT) HSP 1 Score: 138 bits (348), Expect = 5.800e-39 Identity = 70/126 (55.56%), Postives = 88/126 (69.84%), Query Frame = 1
Query: 1 SPDGTCLLTSSDDTVLRVFEKRQAPSVTVDDAASSAHSHFTDDWSPCLYSV-EGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAGDKIFAG 375
SPDGTC L+SS+D LRVF P VDD+A + S D + V EGE+VYDF WYP+MS+++P + VF ST+RD P+H+WDA TG LR TYRAYD +DE+ AA S+ FN AG+KIFAG
Sbjct: 61 SPDGTCFLSSSEDNTLRVFT---LPDYGVDDSAKAISSDVDQDSFTANHVVTEGESVYDFCWYPYMSATDPVSCVFASTTRDLPIHVWDATTGQLRCTYRAYDAVDEITAAFSIAFNPAGNKIFAG 183
BLAST of mRNA_E-fasciculatus_F_contig11996.1550.1 vs. uniprot
Match: A0A6P5NHT4_ARADU (telomerase Cajal body protein 1 isoform X1 n=15 Tax=Arachis TaxID=3817 RepID=A0A6P5NHT4_ARADU) HSP 1 Score: 142 bits (357), Expect = 1.310e-38 Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 1
Query: 1 SPDGTCLLTSSDDTVLRVFEKRQAPSVTVDDAASSAHSHFTDDWSPCLYSVEGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAGDKIFAG 375
SPDG+C LT+SDD LR+F + T+ DA+ S D ++ L EGE ++DF WYP+MS+S+P T+VF +T+RDHP+H+WDA G LR TYRAYD++DE+ AA SV FN AG KIFAG
Sbjct: 58 SPDGSCFLTTSDDNTLRIFTLPDPEAATLVDASQSDD----DSFAASLVMSEGEPIHDFCWYPYMSASDPVTNVFATTTRDHPIHLWDATLGQLRCTYRAYDNMDEITAAFSVAFNPAGTKIFAG 178
BLAST of mRNA_E-fasciculatus_F_contig11996.1550.1 vs. uniprot
Match: A0A059C9R8_EUCGR (Uncharacterized protein n=3 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059C9R8_EUCGR) HSP 1 Score: 142 bits (359), Expect = 3.070e-38 Identity = 70/126 (55.56%), Postives = 92/126 (73.02%), Query Frame = 1
Query: 1 SPDGTCLLTSSDDTVLRVFEKRQAPSVTVDDAASSAHSHFTDD-WSPCLYSVEGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAGDKIFAG 375
SPDGTCLL+SS+D LRVF P D +A+++ S +D ++ L EGE+VYDF WYP+MS+++P + VF ST+RDHP+H+WDA TG LR TYRAYD +DE+ AA S+ FN AG+KIFAG
Sbjct: 67 SPDGTCLLSSSEDNTLRVFA---LPEYGGDHSANASSSKLDEDSFAANLVVTEGESVYDFCWYPYMSATDPVSCVFASTTRDHPIHVWDATTGQLRCTYRAYDGVDEITAAFSIAFNPAGNKIFAG 189
BLAST of mRNA_E-fasciculatus_F_contig11996.1550.1 vs. uniprot
Match: UPI0011D24311 (telomerase Cajal body protein 1 isoform X1 n=2 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D24311) HSP 1 Score: 142 bits (358), Expect = 4.370e-38 Identity = 70/126 (55.56%), Postives = 90/126 (71.43%), Query Frame = 1
Query: 1 SPDGTCLLTSSDDTVLRVFEKRQAPSVTVDDAASSAHSHFT-DDWSPCLYSVEGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAGDKIFAG 375
SPDGTCLL+SS+D LRVF P DD +++ S D ++ L EGE+VYDF WYP+MS+++P + VF ST+RDHP+H+WDA TG LR TYRAYD +DE+ AA S+ FN AG+KIFAG
Sbjct: 65 SPDGTCLLSSSEDNTLRVFA---LPDYGGDDGTNASSSDVDRDSFAANLVVTEGESVYDFCWYPYMSATDPVSCVFASTTRDHPIHVWDATTGQLRCTYRAYDAVDEITAAFSIAFNPAGNKIFAG 187
BLAST of mRNA_E-fasciculatus_F_contig11996.1550.1 vs. uniprot
Match: UPI00051B9E35 (telomerase Cajal body protein 1-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00051B9E35) HSP 1 Score: 136 bits (342), Expect = 5.560e-38 Identity = 69/125 (55.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 1 SPDGTCLLTSSDDTVLRVFEKRQAPSVTVDDAASSAHSHFTDDWSPCLYSVEGETVYDFAWYPHMSSSEPATSVFVSTSRDHPLHMWDAFTGNLRATYRAYDHLDEVVAANSVCFNTAGDKIFAG 375
SPDG+C LT SDD F S + D +SSA TD ++ L EGE+VYD+ YP+MSSS P T VF ST+RDHP+H+WDA TG LR TYRAYD +DE++AA S+ FN AG KIFAG
Sbjct: 42 SPDGSCFLTCSDDNTFCSFTLPYVESGWLADTSSSAAD--TDSYAASLVMSEGESVYDYCRYPYMSSSSPETCVFASTARDHPIHLWDATTGQLRCTYRAYDAMDEIIAAFSIAFNPAGTKIFAG 164 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11996.1550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11996.1550.1 >prot_E-fasciculatus_F_contig11996.1550.1 ID=prot_E-fasciculatus_F_contig11996.1550.1|Name=mRNA_E-fasciculatus_F_contig11996.1550.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=128bp SPDGTCLLTSSDDTVLRVFEKRQAPSVTVDDAASSAHSHFTDDWSPCLYSback to top mRNA from alignment at E-fasciculatus_F_contig11996:2690..3629+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11996.1550.1 ID=mRNA_E-fasciculatus_F_contig11996.1550.1|Name=mRNA_E-fasciculatus_F_contig11996.1550.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=940bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11996:2690..3629+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11996:2690..3629+ >mRNA_E-fasciculatus_F_contig11996.1550.1 ID=mRNA_E-fasciculatus_F_contig11996.1550.1|Name=mRNA_E-fasciculatus_F_contig11996.1550.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11996:2690..3629+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |