mRNA_E-fasciculatus_F_contig11986.1544.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11986.1544.1
Unique NamemRNA_E-fasciculatus_F_contig11986.1544.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11986.1544.1 vs. uniprot
Match: D7G300_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G300_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.650e-7
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 VTSEDTDCIEEWQGNGWCEDINNTPSCSYDGGDV 102
              SE+  C+E+WQ +G+C+D+NN  SC YDGGDV
Sbjct:   87 AASEEEACVEDWQSDGFCDDVNNNYSCGYDGGDV 120
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BLAST of mRNA_E-fasciculatus_F_contig11986.1544.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.230e-6
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    4 TSEDTDCIEEWQGNGWCEDINNTPSCSYDGGD 99
            T+E   C E W+G+ WC++INN PSC YDGGD
Sbjct:   54 TTEVATCEESWKGDSWCDEINNNPSCDYDGGD 85
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BLAST of mRNA_E-fasciculatus_F_contig11986.1544.1 vs. uniprot
Match: A0A6H5JRS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS7_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 1.530e-5
Identity = 17/28 (60.71%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   16 TDCIEEWQGNGWCEDINNTPSCSYDGGD 99
            +DC+E+W G+G C+D+NN+  CSYDGGD
Sbjct:  175 SDCVEQWIGDGACDDMNNSAECSYDGGD 202
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11986.1544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G300_ECTSI1.650e-755.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7Z1_9PHAE1.230e-659.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRS7_9PHAE1.530e-560.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11986contigE-fasciculatus_F_contig11986:3694..3807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927706.914137-CDS-E-fasciculatus_F_contig11986:3693..38071622927706.914137-CDS-E-fasciculatus_F_contig11986:3693..3807Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11986 3694..3807 +
1695995659.2651505-CDS-E-fasciculatus_F_contig11986:3693..38071695995659.2651505-CDS-E-fasciculatus_F_contig11986:3693..3807Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11986 3694..3807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11986.1544.1prot_E-fasciculatus_F_contig11986.1544.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11986 3694..3807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11986.1544.1

>prot_E-fasciculatus_F_contig11986.1544.1 ID=prot_E-fasciculatus_F_contig11986.1544.1|Name=mRNA_E-fasciculatus_F_contig11986.1544.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=38bp
VTSEDTDCIEEWQGNGWCEDINNTPSCSYDGGDVSVP*
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mRNA from alignment at E-fasciculatus_F_contig11986:3694..3807+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11986.1544.1 ID=mRNA_E-fasciculatus_F_contig11986.1544.1|Name=mRNA_E-fasciculatus_F_contig11986.1544.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=114bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11986:3694..3807+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCACCTCCGAAGACACAGACTGCATCGAGGAGTGGCAAGGCAATGGTTG
GTGTGAGGACATCAACAACACCCCTTCATGCAGTTACGACGGGGGCGACG
TGAGTGTGCCTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11986:3694..3807+

>mRNA_E-fasciculatus_F_contig11986.1544.1 ID=mRNA_E-fasciculatus_F_contig11986.1544.1|Name=mRNA_E-fasciculatus_F_contig11986.1544.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=228bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11986:3694..3807+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCACCTCCGAAGACACAGACTGCATCGAGGAGTGGCAAGGCAATGGTTG
GTGTGAGGACATCAACAACACCCCTTCATGCAGTTACGACGGGGGCGACG
TGAGTGTGCCTTGAGTCACCTCCGAAGACACAGACTGCATCGAGGAGTGG
CAAGGCAATGGTTGGTGTGAGGACATCAACAACACCCCTTCATGCAGTTA
CGACGGGGGCGACGTGAGTGTGCCTTGA
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