mRNA_E-fasciculatus_F_contig11887.1476.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11887.1476.1
Unique NamemRNA_E-fasciculatus_F_contig11887.1476.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11887.1476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11887contigE-fasciculatus_F_contig11887:1001..3033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size190
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11887.1476.1prot_E-fasciculatus_F_contig11887.1476.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11887 1024..3033 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.1725473-UTR-E-fasciculatus_F_contig11887:1000..10231622927699.1725473-UTR-E-fasciculatus_F_contig11887:1000..1023Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11887 1001..1023 +
1695995655.0272322-UTR-E-fasciculatus_F_contig11887:1000..10231695995655.0272322-UTR-E-fasciculatus_F_contig11887:1000..1023Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11887 1001..1023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.1898158-CDS-E-fasciculatus_F_contig11887:1023..10681622927699.1898158-CDS-E-fasciculatus_F_contig11887:1023..1068Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11887 1024..1068 +
1695995655.0406458-CDS-E-fasciculatus_F_contig11887:1023..10681695995655.0406458-CDS-E-fasciculatus_F_contig11887:1023..1068Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11887 1024..1068 +
1622927699.2052443-CDS-E-fasciculatus_F_contig11887:2913..30331622927699.2052443-CDS-E-fasciculatus_F_contig11887:2913..3033Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11887 2914..3033 +
1695995655.0577424-CDS-E-fasciculatus_F_contig11887:2913..30331695995655.0577424-CDS-E-fasciculatus_F_contig11887:2913..3033Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11887 2914..3033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11887.1476.1

>prot_E-fasciculatus_F_contig11887.1476.1 ID=prot_E-fasciculatus_F_contig11887.1476.1|Name=mRNA_E-fasciculatus_F_contig11887.1476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=55bp
MGVDVGDAARQGLVQDFFLGGGSRGPAAYMPSGVTTGGGGGGEGRRDGGD
TSESE
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mRNA from alignment at E-fasciculatus_F_contig11887:1001..3033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11887.1476.1 ID=mRNA_E-fasciculatus_F_contig11887.1476.1|Name=mRNA_E-fasciculatus_F_contig11887.1476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2033bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11887:1001..3033+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCGGTGCGAGTGCCCCGTTTCATGGGCGTTGACGTTGGCGACGCAGCG
CGGCAAGGCCTAGTGCAGGTGTGTGTTCATGTGGAATATCGCTTTGTTTC
AAGTACATAACGCCGGGCTCCTCGGCAGGGCGTCTCTCTGCAGTGATTTT
ACTTCGAAGTACTCTGTTCCGTCCGTGTCTCACCGCCTGGCCCCGTGCGA
CACGTGTATTTTTGTTTTTTGCGTTCAGTTTCGCTGAAGCAGAAAAAGAG
CCCAGGTGAGATGCCGCAACAAGTTGTTGGCCCATGTCGCGGCCAAGCAC
ACTACCGACCATCTGCCTGGAGCGCACGGGAAACAGAGAATGATGACTAG
ATAGGGGGGGGTAATGAGCCGCGGGTGACGACCCAATGCCTTGCAGTAGT
CTATCTGCGATGCTGCTATGCAAGGTGCCGAGAGACACGCTGCCCCCAGG
CAGCAACGCAGCAGGACCGCACAATTCTTACTTGGGGTATTTTATTCGAA
CGAATCTTCCAAGACCTTGTACGGGCCCCAGCTGGAAGTTTGTTGACAAT
ATATATTGCACGTCAACGCAAGTGAACGGCGGAAGAACACACACAACACA
GAGAACATGCATGCGCGCCTCTTGCTACAACAGTGGTACCGCCAAACGGC
CTGCACCATACAGTACTGACGCAGACACAAATTGAACAGTGATGTGGTAG
CTTACATGAACGCACTTGTAGTGCTACTGCTGCTGTTGTGGCGATGGCTC
CCATCCATCTTGCTTTCTTAATCAGCAGTGCATGCATGCGAGAGTTACAG
CCTGACGGCTGCAAGCACAGAAACAGGCGGCTCTTCTTTGTTGTGCATAT
TTTTGCCCTTGGCACAGCAGTGTTGCGTTTCCCTGCAAGTGACGGCTCCC
CACACACACACCGAAGGAAGCAACAGCGTGACCAAAGGTATCCTACACGA
GCTATGTCCATGCTCCGTCTTGTGTATTGTTTAACACCGACCAGGAGGCT
GTAGTACGCTCAGAAATAGCGGGCGCGAGAGTCTGGCACAGCCCGCTGGG
GGCCTTGGATGAGCTTGTAATTTTTGCCCCGAGTGTAGGATATTTGGTTT
ATTTACCGATGTCCCCTCTCCACACACACAACGAAGCAAGGGCAGCAATG
ACGATGAAATCCGCCACGAGCTGTGTGTGTGGCAAGCTTCCCCCCCCCAG
TGCTTTCTTGCCCCTCCCAGCGGTATTGCGTGTTTAGCTGAGCGCTTCCT
CCGTTTCTCCTGGTTTGAACCGAGCAAGCAACTGCTGCGTTTGAATCGGC
CACGGGTAAGATCCCCGTTTGCGTGCCGCCTTTCATGTGTGGAAACCCGG
GGTTGGGGGGGCGCGATTTCCCACGAACTTGGGACACACATGCCTGTGAA
TCACAGCCATCTCTCGCCGAAGCACGACGCAACCGGTGTGACGAAGAGCG
CGCTATATTTCTTCTTCCTCAGAGGTGAACAGATCGTCGTTCGGTGCCCA
ATAGTGCCGTTGTGGTCCGAAAGATGAGCCAGATCGGCTTCACGGAAATC
AAACTTTGGGCTCGATATTTAGAACCTGTTTTTTCCCTCTGGGCAGGGAA
AAGAACGGGTCGCGCTTCGAGCTGCGCGGCTCATTTAAAACAAACTACCG
AGCATGCGCTACGGCGAGAGAGGTCCATGTCTCTCTCTTTTATGATGACG
AGCGTGCCAGATATATATGTTCCCCTGGTGGACCACAATCGGACACGCTA
GTATCGTGTACCTGGTACCAGGTATACAGGTTCAGACTTGGTTTGGTTGA
TGCGCACTGTCTAAAATAGATGGTATGTTTCTGTTTTTTCCTTGCGAAAC
TCGTCCTGTCTTCGCGTTTTTTGCCCACATCCGAATATTCTCATACTTTT
TTTTCTGTTTTACGATTTCTTTCTCGGGGGCGGAAGCCGCGGTCCCGCCG
CGTACATGCCGTCCGGGGTTACCACTGGCGGCGGGGGGGGTGGCGAGGGG
AGGAGGGATGGAGGAGACACATCCGAGTCAGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11887:1001..3033+

>mRNA_E-fasciculatus_F_contig11887.1476.1 ID=mRNA_E-fasciculatus_F_contig11887.1476.1|Name=mRNA_E-fasciculatus_F_contig11887.1476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11887:1001..3033+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGTTGACGTTGGCGACGCAGCGCGGCAAGGCCTAGTGCAGATGGG
CGTTGACGTTGGCGACGCAGCGCGGCAAGGCCTAGTGCAGGATTTCTTTC
TCGGGGGCGGAAGCCGCGGTCCCGCCGCGTACATGCCGTCCGGGGTTACC
ACTGGCGGCGGGGGGGGTGGCGAGGGGAGGAGGGATGGAGGAGACACATC
CGAGTCAGAAGATTTCTTTCTCGGGGGCGGAAGCCGCGGTCCCGCCGCGT
ACATGCCGTCCGGGGTTACCACTGGCGGCGGGGGGGGTGGCGAGGGGAGG
AGGGATGGAGGAGACACATCCGAGTCAGAA
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