mRNA_E-fasciculatus_F_contig11872.1465.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11872.1465.1 vs. uniprot
Match: A0A6H5KV73_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV73_9PHAE) HSP 1 Score: 327 bits (837), Expect = 1.540e-96 Identity = 214/256 (83.59%), Postives = 220/256 (85.94%), Query Frame = 1
Query: 4 LGWRVEPKYTEAVTHVVCGTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRRRCRAEEEAFEVAGDKKSHVPSAPTRSRLAHADVDRPGLFQGITFHFRGEFGTTGSPPLSELRSMLLANAGKVVNTLGSLCGTRSTALGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVCGRGDEVVGV--DVVRPIWLVDSVGCYRVLKPAVHHRVPGFGLE 765
LGW+VEPKYTEAVTHVVCGTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRR CRAEEEAFEV GDKKSHVPSAPTRSRLAHADVDRPGLFQGITFHFRG+FGTTGSPPLS+L SMLLANAGKVV+TLGSLCG RSTA+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G CGR D VGV DVVRPIWLVDSVGC+RVLKPAVHHRVPGFGLE
Sbjct: 1379 LGWQVEPKYTEAVTHVVCGTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRRGCRAEEEAFEVTGDKKSHVPSAPTRSRLAHADVDRPGLFQGITFHFRGQFGTTGSPPLSDLESMLLANAGKVVSTLGSLCGARSTAVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAETELSRQGSESAPRGG-----GGCGRDDGGVGVVVDVVRPIWLVDSVGCFRVLKPAVHHRVPGFGLE 1629
BLAST of mRNA_E-fasciculatus_F_contig11872.1465.1 vs. uniprot
Match: D8LPM9_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM9_ECTSI) HSP 1 Score: 314 bits (805), Expect = 1.580e-94 Identity = 181/259 (69.88%), Postives = 187/259 (72.20%), Query Frame = 1
Query: 1 SLGWRVEPKYTEAVTHVVCGTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRRRCRAEEEAFEVAGDKKSHVPSAPTRSRLAHADVDRPGLFQGITFHFRGEFGTTGSPPLSELRSMLLANAGKVVNTLGSLCGTRSTALGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVCGRGDEVVGV----DVVRPIWLVDSVGCYRVLKPAVHHRVPGFGLE 765
S GWRVEPKYTEAVTHVVCGTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRR CRAEEEAFEVAGDKKSHVPSAPTRSRLAHADVDRPGLFQGI FHFRG+FGTTGSPPLS+L SMLLANAGKVV+TLGSLCG RS LG G XXXXXXXXX XX GR ++ GV DVVRPIWLVDSVGC+RVLKPAVHHRVPGFG E
Sbjct: 734 SRGWRVEPKYTEAVTHVVCGTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRRGCRAEEEAFEVAGDKKSHVPSAPTRSRLAHADVDRPGLFQGIMFHFRGQFGTTGSPPLSDLESMLLANAGKVVSTLGSLCGARSIPLGSGSGXXXXXXXXXGWRPRKVVIFQPSSPDEDQRAMEEKKLAAALAAEAELLRQGSESAPRGGXXW----GRDEDEDGVGVVVDVVRPIWLVDSVGCFRVLKPAVHHRVPGFGPE 988
BLAST of mRNA_E-fasciculatus_F_contig11872.1465.1 vs. uniprot
Match: A0A8K1C6G5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6G5_PYTOL) HSP 1 Score: 79.3 bits (194), Expect = 3.530e-12 Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 85 RVRSVKFLRAVAGGKWVVTEAWLQECRRRRCRAEEEAFEVAGDKKS-HVPSAPTRSRLAH-ADVDRPG-----------LFQGITFHFRGEFGTTGSPPLSELRSMLLANAGKVVNTL 399
++RS+K+L+ + GG+W+V+E WL+EC R+ R E AFE G K+ H+ SA R+RL A++ R G LF G+ FH GEF PP SEL ++L GKV+ L
Sbjct: 457 KIRSLKYLKGLVGGRWIVSEGWLRECARQGKRVSEAAFETDGHLKAQHIESACRRARLLREANLHRLGPSPDAFKLGTQLFVGLCFHIFGEF-LPPMPPPSELDTLLRIGGGKVIRYL 573
BLAST of mRNA_E-fasciculatus_F_contig11872.1465.1 vs. uniprot
Match: A0A2R5G0G9_9STRA (E3 ubiquitin-protein ligase LNX n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0G9_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.360e-9 Identity = 49/148 (33.11%), Postives = 74/148 (50.00%), Query Frame = 1
Query: 1 SLGWRVEPKYTEAVTHVVCGTVPKTAKARV---RSVKFLRAVAGGKWVVTEAWLQECRRRRCRAEEEAFEVAGDKKSHVPS--APTRSRLAHA-DVDR-PGLFQGITFHFRGEFGTTGSPPLSELRSMLLANAGKVVNTLGSLCGTRS 423
+L VE + TE TH+V + K ++ R+ R++K++RA+A G W+V W+++ E +E+ GD K+ S P RSR AHA D D GLF G+T G F + PP +L S+ G ++ L RS
Sbjct: 954 NLHGEVELEDTERATHLVVPCIRKASQGRIAKARTLKYVRAIAAGLWIVDVRWVRDSANANAWLAEGPYEIQGDMKTIGLSRDGPKRSREAHAQDKDSGKGLFAGVTMFLCGSFAGSRVPPKRDLESIFAMCGGTLIRNRRDLEAARS 1101
BLAST of mRNA_E-fasciculatus_F_contig11872.1465.1 vs. uniprot
Match: A0A0G4FP14_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FP14_VITBC) HSP 1 Score: 69.7 bits (169), Expect = 4.580e-9 Identity = 46/130 (35.38%), Postives = 66/130 (50.77%), Query Frame = 1
Query: 7 GWRVEPKYTEAVTHVVCGTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRRRCRAEEEAFEVAGDKKSHVPSAPTRSRLAHADVDRPGLFQGITFHFRGEFGTTGSPPLSELRSMLLANAGKVVNT 396
G RV P Y+ VTH++ +K R+VKFL+A+ GKW++ W+ C E+ +EV+ D + P P R R H + R LF G+ F+F G F T P SE++ +L G VV T
Sbjct: 512 GCRVVPSYSPEVTHLIV-----RSKECRRTVKFLKALLTGKWILAFDWVSRCLSGNRWLSEDGYEVSKDMTTGAPIPPRRQRT-HDTMGR--LFGGLRFYFLGTF-TDPLPTASEVKDLLELGGGCVVTT 632
BLAST of mRNA_E-fasciculatus_F_contig11872.1465.1 vs. uniprot
Match: A0A484E0X0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0X0_BRELC) HSP 1 Score: 69.3 bits (168), Expect = 6.370e-9 Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 1
Query: 85 RVRSVKFLRAVAGGKWVVTEAWLQECRRRRCRAEEEAFEVAGDKKSH-VPSAPTRSRLAHA--------DVDRPG----LFQGITFHFRGEFGTTGSPPLSELRSMLLANAGKVV 390
++RS+K+L+A+ GG+W+V++ WLQ C E +EV G K + A RSRLA D+D LF G FH G+F + PP+SEL ++++ GK++
Sbjct: 584 KIRSLKYLKALVGGRWIVSDYWLQACANCGGYVSELKYEVDGHWKGRTIKEAVKRSRLAREKLLQLAMPDIDHSNIGTMLFAGFCFHVTGDF-LSPMPPISELNTLIMTGGGKLI 697
BLAST of mRNA_E-fasciculatus_F_contig11872.1465.1 vs. uniprot
Match: UPI00201F01AB (BRCA1-associated RING domain protein 1-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F01AB) HSP 1 Score: 69.3 bits (168), Expect = 6.500e-9 Identity = 45/130 (34.62%), Postives = 66/130 (50.77%), Query Frame = 1
Query: 13 RVEPKYTEAVTHVVC-----GTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRRRCRAEEEAFEVAGDKKSHVPSAPTRSRLAHADVDRPGLFQGITFHFRGEFGTTGSPPLSELRSMLLANAGKV 387
+V ++ VTHV+ G P+T +KFL AV GGKW+++ WL C R + EEAFEV G + A T+ RL PGLF G F+F G F +P +L++++ + GK+
Sbjct: 609 KVVERFVPEVTHVITSCNQQGQCPRT-------LKFLNAVLGGKWILSIEWLDLCLEYRQKVCEEAFEVPGPSTNPDSHAATKGRLNRRQ-QLPGLFDGCQFYFYGTFHEP-TPQKEDLQTLVKSAGGKI 729
BLAST of mRNA_E-fasciculatus_F_contig11872.1465.1 vs. uniprot
Match: UPI001EE509B3 (BRCA1-associated RING domain protein 1-like isoform X1 n=2 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE509B3) HSP 1 Score: 69.3 bits (168), Expect = 6.730e-9 Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 1
Query: 13 RVEPKYTEAVTHVVC-----GTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRRRCRAEEEAFEVAGDKKSHVPSAPTRSRLAHADVDRPGLFQGITFHFRGEFGTTGSPPLSELRSMLLANAGKVVN 393
+V ++ VTHV+ G P+T +KFL AV GGKW+++ WL C + + EEAFEV G A T+ RL PGLF G F+F G F +P +L++++ + GK+++
Sbjct: 681 KVVGRFVPEVTHVITSCNRQGQCPRT-------LKFLNAVLGGKWILSVEWLDLCLEYKQKVCEEAFEVPGPSTKPDSHAATKGRLNRRQ-QLPGLFDGCQFYFYGSFHEP-TPHKEDLQTLVKSAGGKIIS 803
BLAST of mRNA_E-fasciculatus_F_contig11872.1465.1 vs. uniprot
Match: A0A2H9TH45_9FUNG (RING-type E3 ubiquitin transferase BRCA1 n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TH45_9FUNG) HSP 1 Score: 68.6 bits (166), Expect = 1.200e-8 Identity = 39/138 (28.26%), Postives = 72/138 (52.17%), Query Frame = 1
Query: 7 GWRVEPKYTEAVTHVVCGTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRRRCRAEEEAFEVAGDKKSHVPSAPTRSRLAHADVDRPGLFQGITFHFRGEFGTTGSPPLSELRSMLLANAGKVVNTLGSLCGTR 420
G R+ ++ E VTH++ T + AK R++K+LR V G W+V+ W+ C + +E+ FEV GD+ P R R + + + P L G +F+ G F +P + +L+++++ G+++ + L R
Sbjct: 245 GLRISQQFDEDVTHIITPTKNQVAK---RTLKYLRGVLRGCWLVSSEWVDICLQEGRLLDEKPFEVTGDEYFPDEDGPRRGRTSKTNGESP-LLAGYSFYLYGAFS---APNIDDLQALIMDAGGELIGNIEELASQR 375
BLAST of mRNA_E-fasciculatus_F_contig11872.1465.1 vs. uniprot
Match: A0A1W0A016_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A016_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.470e-8 Identity = 50/152 (32.89%), Postives = 75/152 (49.34%), Query Frame = 1
Query: 25 KYTEAVTHVVCG---TVPKTAK----------ARVRSVKFLRAVAGGKWVVTEAWLQECRRRRCRAEEEAFEVAGDKK-SHVPSAPTRSRL--------AHADVDRPG--LFQGITFHFRGEFGTTGSPPLSELRSMLLANAGKVVNTLGSL 408
++TE VTHV+ T P K ++RS+K+L+AV G+W+V+E W++ C + + EE FEV G K HVP ++RL A + G LF IT G F + PP +E+ S++ G VV+T+ L
Sbjct: 285 EWTEDVTHVIVKCQQTTPSRQKLQISDKVKRWVKIRSLKYLKAVVAGRWIVSEEWIRACVKAKGLVSEENFEVQGLLKLQHVPEVAKKARLRRQANLIYATGPLSAIGTRLFSAITCTVYGNFASP-LPPKNEIGSLVRLGHGHVVSTIDDL 435 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11872.1465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11872.1465.1 >prot_E-fasciculatus_F_contig11872.1465.1 ID=prot_E-fasciculatus_F_contig11872.1465.1|Name=mRNA_E-fasciculatus_F_contig11872.1465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=256bp SLGWRVEPKYTEAVTHVVCGTVPKTAKARVRSVKFLRAVAGGKWVVTEAWback to top mRNA from alignment at E-fasciculatus_F_contig11872:2255..4216- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11872.1465.1 ID=mRNA_E-fasciculatus_F_contig11872.1465.1|Name=mRNA_E-fasciculatus_F_contig11872.1465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1962bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11872:2255..4216- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11872:2255..4216- >mRNA_E-fasciculatus_F_contig11872.1465.1 ID=mRNA_E-fasciculatus_F_contig11872.1465.1|Name=mRNA_E-fasciculatus_F_contig11872.1465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1536bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11872:2255..4216- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |