mRNA_E-fasciculatus_F_contig1187.1463.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1187.1463.1
Unique NamemRNA_E-fasciculatus_F_contig1187.1463.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1187.1463.1 vs. uniprot
Match: A0A6H5KW95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW95_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.780e-24
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:    1 EDFATVSRYTKGEIFRMRLGESLGVRLDLVAESLRDNGQIETSEYNDVNRAIIFGGGTVSTHLPLAEGIAVRKGELDHFDLRIDANSKPGIALAKAFRIKGLSDDDG 321
            + FATVS YT G++F +R GE LG+R+DLVA+    +G+  T   ND +R   FG G VS  LPL +GIAVRKG L HFDLRI+A S  G ALA+A  I+ L+D+DG
Sbjct:  915 DGFATVSEYTNGDMFDLRPGEPLGIRVDLVADYYEPSGKHVTYRCNDGDRKE-FGYGLVSRRLPLVDGIAVRKGALAHFDLRIEACSSVGTALAEALEIRQLTDEDG 1020
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1187.1463.1 vs. uniprot
Match: D7FJL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 4.600e-23
Identity = 57/107 (53.27%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:    1 EDFATVSRYTKGEIFRMRLGESLGVRLDLVAESLRDNGQIETSEYNDVNRAIIFGGGTVSTHLPLAEGIAVRKGELDHFDLRIDANSKPGIALAKAFRIKGLSDDDG 321
            + FATVS YT G++F +R GE LG+R+DLVA+    +G+  T   ND +R   FG G VS  LPL + IAVRKG L HFDLRI A S  G ALA+A +I+ L+D+DG
Sbjct: 1219 DGFATVSEYTNGDMFDLRPGEPLGIRVDLVADYCEPSGEHVTYRCNDGDREK-FGYGPVSRLLPLVDSIAVRKGALAHFDLRIKACSSVGAALAEALKIRQLTDEDG 1324
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1187.1463.1 vs. uniprot
Match: D7FUD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 4.050e-22
Identity = 56/110 (50.91%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:    1 EDFATVSRYTKGEIFRMRLGESLGVRLDLVAESLRDNGQIETSEYNDVNRAIIFGGGTVSTHLPLAEGIAVRKGELDHFDLRIDANSKPGIALAKAFRIKGLSDDDGNMK 330
            + FATVS YT G++F +R  E LGVR  LVAE L  +G ++T   ND  R      G VST LPLA+GIA+RKG L HFDLRI+  S+ GIALA A ++  L+++DG  +
Sbjct: 1262 DGFATVSNYTTGDMFDLRPCEFLGVRAGLVAEYLDPDGDLQTMLCNDETRKKWGCFGPVSTDLPLADGIALRKGALPHFDLRIETCSRVGIALAGALKLPQLTNEDGEKE 1371
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1187.1463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW95_9PHAE2.780e-2454.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJL7_ECTSI4.600e-2353.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUD8_ECTSI4.050e-2250.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1187contigE-fasciculatus_F_contig1187:16315..17974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927697.8047156-CDS-E-fasciculatus_F_contig1187:16315..165161622927697.8047156-CDS-E-fasciculatus_F_contig1187:16315..16516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1187 16316..16516 -
1695995654.4800925-CDS-E-fasciculatus_F_contig1187:16315..165161695995654.4800925-CDS-E-fasciculatus_F_contig1187:16315..16516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1187 16316..16516 -
1622927697.8180778-CDS-E-fasciculatus_F_contig1187:17845..179741622927697.8180778-CDS-E-fasciculatus_F_contig1187:17845..17974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1187 17846..17974 -
1695995654.4893286-CDS-E-fasciculatus_F_contig1187:17845..179741695995654.4893286-CDS-E-fasciculatus_F_contig1187:17845..17974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1187 17846..17974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1187.1463.1prot_E-fasciculatus_F_contig1187.1463.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1187 16316..17974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1187.1463.1

>prot_E-fasciculatus_F_contig1187.1463.1 ID=prot_E-fasciculatus_F_contig1187.1463.1|Name=mRNA_E-fasciculatus_F_contig1187.1463.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
EDFATVSRYTKGEIFRMRLGESLGVRLDLVAESLRDNGQIETSEYNDVNR
AIIFGGGTVSTHLPLAEGIAVRKGELDHFDLRIDANSKPGIALAKAFRIK
GLSDDDGNMK
back to top

mRNA from alignment at E-fasciculatus_F_contig1187:16315..17974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1187.1463.1 ID=mRNA_E-fasciculatus_F_contig1187.1463.1|Name=mRNA_E-fasciculatus_F_contig1187.1463.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1187:16315..17974- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGACTTCGCCACAGTCTCAAGGTACACCAAAGGCGAAATATTTCGCAT
GAGGCTCGGTGAATCTCTGGGGGTTCGGCTCGACCTCGTGGCCGAGTCCC
TCCGTGACAACGGTCAGATCGAAACTTCCGTGAGTACTTGTTGCCTTCGT
GTTGTGCCGTAGTATCTGTTGGGGCACCCGCAGCAAAACGAATGATAGGA
TGACAGCGAGGGTGGGCATACTCACGTCACAGTATGTTACGACAATACGG
CCTCCGATGACCATCACTACCCATGTCACTGTCGACAGCGTGGTCCGATT
GAACCAGCAGCAAGAGAGCAGAATCTTGGCTGCCAAGAACATGAATGAAC
GCAACAGCAATGAACGCAACAGCAAACCATCGCCCCCCACCCCCCCCCCC
AGCAGAATATCTACTTGTACTTACACAAGACGCAACGAGGATCGGTATTC
CTACAGTTGTAGGGCACCATACGCGGGTATTATGGCTCGATCTGTTCATG
GGTGTGTCGAATATTGTTTGAGACTAAAAGAACGTTTTAGCAGCTCGCAA
GGGGCGAAACCACGTGTGGGAATCGTGCTAGATGGTTCCGAGCATGGTTG
AACATGTTGTGCATCACGTACGAGAGATAGGGGTGTGAGGCCTCCTAGAC
CATCTCCTTCCTTTGTTTTTTATGAACAACACGCACGGCGTACCTCACTT
GGACGGAACGGATGTAACCTACCGGAAGGCAGTAATCTTTCTAATCGAAA
TCAGCATCCAACGGTAAGGACATGACACACTCTAGTATTCTACCACGGGC
GACGACGGCGTTGTCTCTGTGGTGTGTGACAGGCCATGAATAGTGCCATC
TTGCAATTCGATAACGGACGACCGGGGAGTGCGCCACTAACGAAGGTGCT
ACTGACTGTGTGGAACAGGAACCGACCAAGGGCTAAACGGGACGCAGCAT
GACGTCGACGTTTCAACGCGTACAGCACACAATCACAATTGTGTTCCAAT
ACTGTCGTTGCATCACTTCCACGCACACGCACGAGAGACGTCAGCGGGAG
ACCCCTAGGGCAATGCTGGTTGGTGCACGAGGGAGAAAAGTCGCGTGCCC
GATCAAGCTTCAGCGTGCGTTCTGCAGTTGCCAAAACGCGCATTAATTGG
CACCATCAACAGATTGTTTTAATGTGCCACAGCCATAGACCCTCCACCTT
CCACCCACGTGTCAAACTTCTGCCAGGTGTGTGCTGAGCGACGAAGAGTA
GTCGAAATCTTCACGGTGCCCGCTTCACTCATGGATATCTCGTTAACACT
CCCGCACGCAGCGTGTTTCATGGAAACCTGCCTGGTTCACAATCGCGTTC
GGCGCTGTTCATTGCCGGTCAAAGTCAAGCCTCGTAGTCTCGCATGTATC
CTCTGAGTATTTTCCATGCGGTTGCTCGCATGTCTTCGCCTCCCGACGTC
TCTCTCAGGAGTACAACGATGTGAACAGGGCTATAATATTTGGTGGGGGG
ACTGTTTCAACACACCTCCCGCTGGCGGAAGGTATTGCCGTCCGCAAGGG
CGAACTGGACCACTTCGATCTGCGGATCGATGCTAATTCGAAACCTGGCA
TCGCCCTGGCTAAGGCGTTTAGAATCAAGGGTCTCTCAGACGACGACGGC
AACATGAAGC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1187:16315..17974-

>mRNA_E-fasciculatus_F_contig1187.1463.1 ID=mRNA_E-fasciculatus_F_contig1187.1463.1|Name=mRNA_E-fasciculatus_F_contig1187.1463.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1187:16315..17974- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGACTTCGCCACAGTCTCAAGGTACACCAAAGGCGAAATATTTCGCAT
GAGGCTCGGTGAATCTCTGGGGGTTCGGCTCGACCTCGTGGCCGAGTCCC
TCCGTGACAACGGTCAGATCGAAACTTCCGAGGACTTCGCCACAGTCTCA
AGGTACACCAAAGGCGAAATATTTCGCATGAGGCTCGGTGAATCTCTGGG
GGTTCGGCTCGACCTCGTGGCCGAGTCCCTCCGTGACAACGGTCAGATCG
AAACTTCCGAGTACAACGATGTGAACAGGGCTATAATATTTGGTGGGGGG
ACTGTTTCAACACACCTCCCGCTGGCGGAAGGTATTGCCGTCCGCAAGGG
CGAACTGGACCACTTCGATCTGCGGATCGATGCTAATTCGAAACCTGGCA
TCGCCCTGGCTAAGGCGTTTAGAATCAAGGGTCTCTCAGACGACGACGGC
AACATGAAGGAGTACAACGATGTGAACAGGGCTATAATATTTGGTGGGGG
GACTGTTTCAACACACCTCCCGCTGGCGGAAGGTATTGCCGTCCGCAAGG
GCGAACTGGACCACTTCGATCTGCGGATCGATGCTAATTCGAAACCTGGC
ATCGCCCTGGCTAAGGCGTTTAGAATCAAGGGTCTCTCAGACGACGACGG
CAACATGAAG
back to top