mRNA_E-fasciculatus_F_contig1186.1457.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1186.1457.1
Unique NamemRNA_E-fasciculatus_F_contig1186.1457.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: D7FUR2_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUR2_ECTSI)

HSP 1 Score: 472 bits (1214), Expect = 1.830e-167
Identity = 244/264 (92.42%), Postives = 249/264 (94.32%), Query Frame = 1
Query:    1 MKSFVAAA-SLCALAPASAFVPGA-LPLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFFNPL 786
            MKSFVAAA SLCALAPASAFVPGA LPLAGVRSAPSKL+MAATPERSISIPIDPYPEGLDGEMVGD GFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGN+VLG DRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEE+         A + LQE+KHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFFNPL
Sbjct:    1 MKSFVAAATSLCALAPASAFVPGASLPLAGVRSAPSKLAMAATPERSISIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNTVLGPDRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEEY--------AEKQLQEIKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFFNPL 256          
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: W7TTD7_9STRA (Light-harvesting protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTD7_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.600e-74
Identity = 128/245 (52.24%), Postives = 161/245 (65.71%), Query Frame = 1
Query:   46 ASAFVPGALPLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPPS-WVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFF 777
            ASAF+    PLA  R A   + MAA  + S ++P D  P  LDG + GD GFDP GF+NNPP  W+ G   G+   +KWYREAE+ HGRVAMLAA GW+FP IYH PGN  +G D FA +NP  A   +P AG  QI  T+  +E  R+NR IR D   AGD+GLGQGEGRWNPF FNY+EE+         A + LQE+K+GR AM+GI G+  Q  V G+GI+ QLG +F  P++V+KAGY+F
Sbjct:   59 ASAFI-APTPLA--RRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIG---GSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKE-AGDLGLGQGEGRWNPFGFNYSEEEY--------AEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYF 288          
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A836CAI0_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI0_9STRA)

HSP 1 Score: 229 bits (585), Expect = 5.250e-72
Identity = 127/256 (49.61%), Postives = 166/256 (64.84%), Query Frame = 1
Query:   19 AASLCALAPASAFVPGALPLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPP-SWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFFNP 783
            AA   A+APA+AF+P + P+A  + +  K+      ERS +IP D  PE LDG +VGD GFDPAGF+NNPP +W+ G   G    +KWYREAE+ HGR AMLAA GWI PE  HFPGN  +G D FA+ NP  A  ++P+AG  QI  TI  +E  R+NR +R  +   GD+GLGQG    NPF FNYTEE+  T        + LQE+K+GR AM+ I GM+ Q+ +  +G++ QL  AF+ PD+V KAGY+F P
Sbjct:    5 AALAFAVAPAAAFLPVSAPVAPAQGSVMKM----VSERSTAIPFDKRPENLDGSLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWIVPEFVHFPGNEQVGVDAFAKTNPWDALYSVPDAGLWQIAATIFAVEVFRINRVVRGGAE-PGDLGLGQGG--LNPFGFNYTEEEYKT--------KQLQELKNGRLAMVAIIGMFLQSAITNEGLIAQLSGAFTFPDAVGKAGYYFPP 242          
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A835YWE6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE6_9STRA)

HSP 1 Score: 224 bits (572), Expect = 4.420e-70
Identity = 131/262 (50.00%), Postives = 166/262 (63.36%), Query Frame = 1
Query:    1 MKSFVAAASLCALAPASAFVPGALPLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPP-SWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFFNP 783
            MK+  A A L A  PA+AFVP   P+A     PSK+ + A  ERS +IP D  PE LDG +VGD GFDPAGF+NNPP +W+ G   G    +KWYREAE+ HGR AMLAA GW+ PE  HFPGN  +G D FA+ NP  A  ++P+AG  QI  TI  +E  R+NR +R D    GD+GLGQG    NPF F+Y+EE            + LQE+K+GR AM+ I GM+ Q  +  QG++ +L  AF+ PD+V KAGYFF P
Sbjct:    1 MKAVAALALLAA--PAAAFVP-VTPVA----TPSKVVLQA--ERSTAIPFDKRPENLDGTLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWVVPEFVHFPGNEAVGVDAFAKTNPWEALYSVPDAGLWQIAATIFAVEVYRINRVVRGDKE-PGDLGLGQGG--LNPFGFDYSEEQYRE--------KQLQEIKNGRLAMVAIIGMFLQAAINQQGLISELSGAFTFPDAVGKAGYFFPP 239          
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A6V1NAG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAG2_HETAK)

HSP 1 Score: 216 bits (550), Expect = 1.210e-66
Identity = 121/237 (51.05%), Postives = 147/237 (62.03%), Query Frame = 1
Query:   73 PLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPPS-WVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPE-IYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFF 777
            PL  V ++ S LSM    ERS ++P+DPYPEGLDG M GD GFDPAGFANNPP  W+ G G  +   + WYREAELAHGRVAMLA  GW FPE  YHFPGN + G D FAE NP+ A    P  G IQI + I  +E  R+   IR D    GD+ LGQ  G  NPF  NY +++          L  ++E+KHGR AM+GI GM FQ    G  +  QLG AF+ P++V  AGY+F
Sbjct:   23 PLKNVATSTSSLSMMQG-ERSKALPMDPYPEGLDGTMAGDVGFDPAGFANNPPKKWLYGGGENS---LDWYREAELAHGRVAMLATVGWFFPETFYHFPGNEIYGQDIFAEANPIKALSVAPAGGLIQIALVIFFVEVWRIKNVIRGDRA-PGDLNLGQ-RGAINPFGLNYDDDEYF--------LMEVREIKHGRLAMLGIMGMIFQQAATGLSLGQQLGGAFTFPEAVKSAGYYF 245          
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A0G4ELJ2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELJ2_VITBC)

HSP 1 Score: 205 bits (521), Expect = 4.040e-62
Identity = 121/252 (48.02%), Postives = 155/252 (61.51%), Query Frame = 1
Query:    1 MKSFVAAASLCALAPASAFVP-GAL----PLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANN-PPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAF 738
            M   VAA +L A+  A+AFVP G L    PL    + PS   M  + +RS+++P+D  P  LDG + GD GFDP GF+NN P +W+ G   G    +KWYREAEL H RVAMLAA GWIFPEI+H PGN+ +G D FAE NP  A   +P  G  QI  T+  +E  RL R +R +   AGD+GLGQGEGRWNPF F + E++             ++E+K+GR AMI I GM  Q  V G+G+L Q+GE F
Sbjct:    1 MMKVVAAVALLAVC-ANAFVPQGVLKRDSPLRKSLTRPSMAEMGES-DRSLALPMDKRPPNLDGSLPGDFGFDPVGFSNNLPRTWLIG---GDERSLKWYREAELVHSRVAMLAALGWIFPEIWHLPGNAAVGVDAFAETNPWKALTTVPKEGLWQIAGTVSAIEFFRLRRVVRGEKE-AGDLGLGQGEGRWNPFGFAFDEDEYYRM--------QVREIKNGRLAMIAIIGMMLQAAVTGEGLLEQIGEGF 238          
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A0G4H236_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H236_9ALVE)

HSP 1 Score: 206 bits (523), Expect = 6.490e-62
Identity = 110/208 (52.88%), Postives = 134/208 (64.42%), Query Frame = 1
Query:  112 MAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANN-PPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGE 732
            M+   +RSI++P D YP GLDG + GD GFDPAGF NN P  W+ G   G    +KWYREAE+ H RVAMLA  GWIFPEI HF GN+ +G D FAE+NPL A    P AG +QI   I  LE  R+ R I+ D+  AGD+GLGQGEGRWNPF FNY+ E+  T           +E+K+GR AMIGI  M  Q    G+G+L QLG+
Sbjct:   91 MSDNGDRSIALPFDKYPPGLDGTLAGDYGFDPAGFTNNLPRQWLIG---GEERSLKWYREAEITHARVAMLATLGWIFPEIAHFGGNAQVGQDAFAELNPLKAIYTAPAAGLVQIAFGIFALEYFRIKRVIQGDAA-AGDLGLGQGEGRWNPFKFNYSPEEYKTM--------QTREIKNGRLAMIGILAMIAQANASGEGLLTQLGQ 286          
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: F0Y1D8_AURAN (Uncharacterized protein LHC9 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1D8_AURAN)

HSP 1 Score: 197 bits (501), Expect = 2.570e-59
Identity = 112/237 (47.26%), Postives = 150/237 (63.29%), Query Frame = 1
Query:   82 GVRSAPSKLSMAATPERSISIPIDPYP---EGLDGEMVGDTGFDPAGFANNPP-SWVQG-EGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFF 777
            G + AP+K +   +     SIP    P     LDG +VGD GFDP GF+   P +W QG EG G+   +K +REAEL HGR+A LA  GWIFPE+YHFPG      D FA+MNP  A D IP+AG +QI+  +  LE +R+NR ++  + + GD+GLGQGEGRWNPF F+YT E+           + LQE+KH R AM+GI G+  ++     G+L QLGE+FS P+ V+KAG++F
Sbjct:   20 GGKKAPAKAAAPVSRGTGPSIPSIALPWTETNLDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGS---LKIFREAELMHGRIAQLACLGWIFPELYHFPGKD----DAFAKMNPYEAVDAIPSAGWLQILAFMSSLEILRVNR-LKDPAYIPGDLGLGQGEGRWNPFGFDYTAEEYYD--------KQLQEIKHSRLAMLGIAGLAAKSSGTDIGVLQQLGESFSRPEFVSKAGFYF 240          
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A7S2UVQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVQ7_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.310e-51
Identity = 114/256 (44.53%), Postives = 150/256 (58.59%), Query Frame = 1
Query:   16 AAASLCALAPASAFVPGALPLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPPSWVQGEGTGTAAR-VKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQG-QGILHQLGEAFSTPDSVAKAGYFF 777
            AAA+L   A A AFV  A       S+  + S+A    +SI++P    P GLDG + GD GFDP GF NN P+      +G +AR +KWYREAEL HGR+ MLA  G IFPEIYHFPGN  +G D F+E+N L A+  +P+    QI++    +E  RL  ++  D   AGD+ LGQ  G +NP   N++EE+          L   +E+KH R AMIG  G   Q    G   +L QLGEAF+ P++V+KAGYFF
Sbjct:    5 AAAALILSAGAEAFVAPA-------SSAGRTSVAPLNAKSIALPWQEAPPGLDGTLPGDVGFDPFGFTNNLPTT-----SGPSARSLKWYREAELIHGRICMLATLGVIFPEIYHFPGNEGVGMDVFSELNALKAFYTVPDFAIYQILLFAGAVEIWRLRNTVLGDRP-AGDLNLGQ-FGAYNPAKLNFSEEEYF--------LMQTREIKHCRLAMIGFLGQVLQLRANGGTPLLQQLGEAFTVPEAVSKAGYFF 238          
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A7S0FUH9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FUH9_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.470e-50
Identity = 103/221 (46.61%), Postives = 130/221 (58.82%), Query Frame = 1
Query:  133 SISIPIDPYPEGLDGEMVGDTGFDPAGFANNPPS-WVQG-EGT-GTAARVKWYREAELAHGRVAMLAAAGWIFPEIYH-FPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVA---GDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYF 774
            S ++P    P  LDG M+GD GFDP GF+  P   W  G EG  G    + WYREAEL HGR+A +A  G+I P ++   PGN   G D ++  NPL A+  +P A  +QI + +  LE  R+N  I  + G A   GD+ +GQGEGRWNPF  +YT E+           + LQE+KH R AMIGI G++ Q    G GI  QLG AFSTPD VAKAGYF
Sbjct:   37 SQALPFATAPATLDGSMLGDAGFDPLGFSTVPVGPWFNGFEGRDGQIGDLSWYREAELIHGRIAQVAVVGFIAPGLFGTLPGNEATGLDAYSNTNPLEAFSQVPGAAILQIFLFMTYLEIKRIN--IIREEGAAYLPGDLRIGQGEGRWNPFGLDYTPEEYDE--------KRLQELKHCRLAMIGIFGLWAQAQASGVGITDQLGAAFSTPDYVAKAGYF 247          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUR2_ECTSI1.830e-16792.42Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
W7TTD7_9STRA1.600e-7452.24Light-harvesting protein n=3 Tax=Monodopsidaceae T... [more]
A0A836CAI0_9STRA5.250e-7249.61Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835YWE6_9STRA4.420e-7050.00Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A6V1NAG2_HETAK1.210e-6651.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4ELJ2_VITBC4.040e-6248.02Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4H236_9ALVE6.490e-6252.88Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
F0Y1D8_AURAN2.570e-5947.26Uncharacterized protein LHC9 n=1 Tax=Aureococcus a... [more]
A0A7S2UVQ7_9STRA2.310e-5144.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0FUH9_9STRA2.470e-5046.61Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1186contigE-fasciculatus_F_contig1186:1810..5105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score474.6
Seed ortholog evalue3.1e-131
Seed eggNOG ortholog2880.D7FUR2
Preferred nameLhca6
KEGG koko:K08908
KEGG Pathwayko00196,map00196
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010114,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
EggNOG free text desc.photosynthesis, light harvesting
EggNOG OGs2CNEI@1,2QVPT@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-19_004240.1
Exons2
Model size789
Cds size789
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927697.0973294-CDS-E-fasciculatus_F_contig1186:1809..23991622927697.0973294-CDS-E-fasciculatus_F_contig1186:1809..2399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1186 1810..2399 +
1695995654.05245-CDS-E-fasciculatus_F_contig1186:1809..23991695995654.05245-CDS-E-fasciculatus_F_contig1186:1809..2399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1186 1810..2399 +
1622927697.1125066-CDS-E-fasciculatus_F_contig1186:4906..51051622927697.1125066-CDS-E-fasciculatus_F_contig1186:4906..5105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1186 4907..5105 +
1695995654.0649185-CDS-E-fasciculatus_F_contig1186:4906..51051695995654.0649185-CDS-E-fasciculatus_F_contig1186:4906..5105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1186 4907..5105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1186.1457.1prot_E-fasciculatus_F_contig1186.1457.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1186 1810..5105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1186.1457.1

>prot_E-fasciculatus_F_contig1186.1457.1 ID=prot_E-fasciculatus_F_contig1186.1457.1|Name=mRNA_E-fasciculatus_F_contig1186.1457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=263bp
MKSFVAAASLCALAPASAFVPGALPLAGVRSAPSKLSMAATPERSISIPI
DPYPEGLDGEMVGDTGFDPAGFANNPPSWVQGEGTGTAARVKWYREAELA
HGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQ
IVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLT
QLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPD
SVAKAGYFFNPL*
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mRNA from alignment at E-fasciculatus_F_contig1186:1810..5105+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1186.1457.1 ID=mRNA_E-fasciculatus_F_contig1186.1457.1|Name=mRNA_E-fasciculatus_F_contig1186.1457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3296bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1186:1810..5105+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGTCCTTCGTCGCAGCAGCCTCCTTGTGCGCCCTGGCGCCGGCCTC GGCCTTCGTGCCGGGAGCCCTGCCCCTCGCCGGCGTGCGCAGCGCACCCT CAAAGCTCTCGATGGCAGCAACGCCCGAGAGGTCGATCTCGATCCCCATC GACCCCTACCCGGAGGGCCTCGACGGCGAGATGGTGGGCGACACTGGCTT CGACCCCGCCGGGTTCGCGAACAACCCTCCCTCGTGGGTTCAGGGAGAGG GCACGGGCACCGCCGCCCGCGTCAAGTGGTACCGCGAGGCCGAGCTCGCC CACGGACGCGTCGCCATGCTCGCCGCCGCGGGGTGGATTTTCCCCGAGAT CTACCACTTCCCGGGCAACAGCGTGCTCGGCGCGGACAGGTTCGCTGAGA TGAACCCCCTCCTCGCGTACGACAACATCCCCAACGCGGGAGGCATCCAG ATCGTCGTGACTATCCTCATCCTCGAGACCATCAGACTCAACAGGAGCAT CAGGAGCGACAGCGGGGTGGCGGGAGACATCGGGCTCGGCCAGGGAGAGG GCCGCTGGAACCCCTTCAACTTTAACTACACCGAGGAGGAGTACGCGGAG AAGCAGCTGCAGGCAAGACGATAAGAGAGAGACACAGAGAGAGAGACGCT CCTGCTGCGCTGTGTGTGTCTGGCTTTGCCTGGTATGAGCGTGTGGTTTG GGCATTTTTGCATGTTTTTTTTTACGTATGTATGTATGCATCATGGGAGA GGCAACGGCGGTAGGTTCTCCGTACACAACTGTTTTCGCTGGGGTTTGCA TGCTGATTCAGTCAGCCTCTCTCGCTCGTGTGTGGCTCCAGGCGCAGTGT TTGGGTCACTCTGTCCATCAAACCCAGTGTTGTCTTGAGCCGAGCCTATT GTCAACCGGCTCTGCCCGTGCTGCATAGAAGCACAGACACCTTTCACGTC CATGCAAGGCTTTATTCAAGCACCTAGATGAAAGGTATCGATTTGAGCCA CCACACATGTATGTGCATGTTTTGCGTCATTGCATACAAAAAAATTGTTG AACGTGTGTTTGATTTCCCATCGAGAACTACTGCTGTACGAACCTAGAGG CGAAAACATGCGTACATGCTGAGTCAGCCCAATAAAAGCATGAGCCAGTT TGGTCTATGGTTCTTGTCTACATGCGTATGTCTTGCTCAGTACATATGGT GGAACTGGCTGCTGCCATGGGTTCCGTTCTATTTCGCCATTTTGTGCAGG AATTTTTGTTTGGGCCTTTTTGTTGTTGTGTATGCCGCATCACACATGAT TTTGGCGTGTGTTTTTCGACTTGAGAGGAGTGGGGTAGGCGGATGCGCAC GCATATGCTCGAATGCCTTGAGCCCTCTCGCTGCTGCAACTCTCGGTTCG AAACAGCTATCTACGTGTCCAAGAAGAGATGCCTTGATGCTCGTGAAACA GGCTGCGAAAACCGATCACATACATGCTACACAAAACGCTCTCCGGCGGG TGAACATGCGCAATGCGTCACCCCCCATCCATAATATCTGAAACCGACGG GGGTTACGGCTGCCTACCACCGCAAACCAAGATGATTTCGAGATCAGTTA TTGTCCCAGCACGAACGAAACATTGCTGGAGGTGGTGCGGTTTCTAGGTG ACCTCTTGCAATTGTCCCACCTTTCATAGATGCGTCGTCTCTCTTGAGTA GTACCCCGGTTGCTGCTGTGATCTGGGTACGGTGCAGCCAAAATTTGTGC CAACAGCTGTAGCCTCCTCGGTCACTCCTCCCTCCGACCAAGCACCAGGT CGCGGACCTCGTCTTAGAAGACATGGCGTCAGCCAAGCACGCTACGATGA CCTCCTGGATAGATACTAGGTTGCACACCTATCACCATCCAGGAGGTCAT GGATGAGTGTTTCGCTACCGCCATGCCTTCGAAGACGAAGTCCTCGACCT GGTGCTCTGCACGGAAACCGTATGCATAAATAAGCTGTACAAAAAAAGCA TGCTGCTGCTGTGTGTACCATACGGTGTTGGTGTGATGACTACGTGTATC GGCACGGTCCTTTGGTATGGTATATTGTGTTTTGAGTTGAATGCGGGTGT TGCCGTGTGGGACCACGCGCCGATACAGTTGTATTGCAGCAATAAACGAT TTTGTGAGGGCCCTACAGTCAGTACCCTTGTAGTTTGCAAGTACATCGAG AAAACAGTCTTGTAGCCAGTCACAAGGCCAGACGCATGGTAATTCAGCGG TAGACTGGTGATCCGTTGTGTGTACATGATGCCCGCAGCATAGTTTATTC CCCGTCACCGTTTTCTTTTTTCAGCGTATTTACGTGGTGTGCTTCGATGA GAAGATGTACGCTGTACATGCACAAATAGCGAGCATGAAGTGTAAATCAT TCTCCCCTCAAAACTACGCTACCGTGGCACAGGCTATTGCCGTTTTCTCT CTGCCGGTCGAATTTACGCCTGTTCACTCGCACGAGGTACATGTAGCTTT TGAACAGAACACCACCGACATCAAATTAACATGGGGCCACAACGCAACGT TTGCCTTCCCTTCCTTGTCTTCGCCGTTGTGGAAACCCAAATGTTTCTTG ATACGTGAACCGTCAGGGGAGCGCCCTAGCCAACTCGAAATATTTGGTGA TCAAGCACATTTTTTCACGTCTAGGCTTCTACTGGAAGCACAAGGGTTTA TAAGGAAATCAACACAGTTGTCCGAAATCTCTCTGGTTTTATCAAAAAGG ACGTGGTGTCTTTATTTCTTTTCGACACGACTAGCAAGACGCTGCATCAT GCGCAGCATGAATCTAGCTGGTGTTTTCTGATTCGTGTGAAGAAAAAGAA GGTTGTCCATGAATGTCTGACAGCCTACCTGTTGAGACTGACCAAATCTA TGTCGAATTTTCCGACCCTCCTAATGTGACTCAAGGCCATTCCCGCTCTC ATCCACCACACTCTGTCGTGGGTGTTGTCGATGAAGTGCCTAACGGGCCG CACCATGGCATCATTTTCGATTATGTCAACGAGGAACTTCTGTCTTCTTA AAGCGTGGCCACAATGCTGCAAGCCCAACACACATGGAAGGCCCCAGTGT TTTAACCCAACTCCGATATCCCGCCGCCCTCCGAACTCTGCAGGAGATGA AGCACGGCCGCACCGCCATGATCGGCATCACGGGCATGTACTTCCAGACC CTGGTCCAGGGACAGGGAATCCTCCACCAGCTCGGCGAGGCGTTCTCGAC CCCCGACAGCGTGGCCAAGGCCGGCTACTTCTTCAACCCTCTCTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1186:1810..5105+

>mRNA_E-fasciculatus_F_contig1186.1457.1 ID=mRNA_E-fasciculatus_F_contig1186.1457.1|Name=mRNA_E-fasciculatus_F_contig1186.1457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1578bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1186:1810..5105+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGTCCTTCGTCGCAGCAGCCTCCTTGTGCGCCCTGGCGCCGGCCTC
GGCCTTCGTGCCGGGAGCCCTGCCCCTCGCCGGCGTGCGCAGCGCACCCT
CAAAGCTCTCGATGGCAGCAACGCCCGAGAGGTCGATCTCGATCCCCATC
GACCCCTACCCGGAGGGCCTCGACGGCGAGATGGTGGGCGACACTGGCTT
CGACCCCGCCGGGTTCGCGAACAACCCTCCCTCGTGGGTTCAGGGAGAGG
GCACGGGCACCGCCGCCCGCGTCAAGTGGTACCGCGAGGCCGAGCTCGCC
CACGGACGCGTCGCCATGCTCGCCGCCGCGGGGTGGATTTTCCCCGAGAT
CTACCACTTCCCGGGCAACAGCGTGCTCGGCGCGGACAGGTTCGCTGAGA
TGAACCCCCTCCTCGCGTACGACAACATCCCCAACGCGGGAGGCATCCAG
ATCGTCGTGACTATCCTCATCCTCGAGACCATCAGACTCAACAGGAGCAT
CAGGAGCGACAGCGGGGTGGCGGGAGACATCGGGCTCGGCCAGGGAGAGG
GCCGCTGGAACCCCTTCAACTTTAACTACACCGAGGAGGAATGAAGTCCT
TCGTCGCAGCAGCCTCCTTGTGCGCCCTGGCGCCGGCCTCGGCCTTCGTG
CCGGGAGCCCTGCCCCTCGCCGGCGTGCGCAGCGCACCCTCAAAGCTCTC
GATGGCAGCAACGCCCGAGAGGTCGATCTCGATCCCCATCGACCCCTACC
CGGAGGGCCTCGACGGCGAGATGGTGGGCGACACTGGCTTCGACCCCGCC
GGGTTCGCGAACAACCCTCCCTCGTGGGTTCAGGGAGAGGGCACGGGCAC
CGCCGCCCGCGTCAAGTGGTACCGCGAGGCCGAGCTCGCCCACGGACGCG
TCGCCATGCTCGCCGCCGCGGGGTGGATTTTCCCCGAGATCTACCACTTC
CCGGGCAACAGCGTGCTCGGCGCGGACAGGTTCGCTGAGATGAACCCCCT
CCTCGCGTACGACAACATCCCCAACGCGGGAGGCATCCAGATCGTCGTGA
CTATCCTCATCCTCGAGACCATCAGACTCAACAGGAGCATCAGGAGCGAC
AGCGGGGTGGCGGGAGACATCGGGCTCGGCCAGGGAGAGGGCCGCTGGAA
CCCCTTCAACTTTAACTACACCGAGGAGGATGTTTTAACCCAACTCCGAT
ATCCCGCCGCCCTCCGAACTCTGCAGGAGATGAAGCACGGCCGCACCGCC
ATGATCGGCATCACGGGCATGTACTTCCAGACCCTGGTCCAGGGACAGGG
AATCCTCCACCAGCTCGGCGAGGCGTTCTCGACCCCCGACAGCGTGGCCA
AGGCCGGCTACTTCTTCAACCCTCTCTAATGTTTTAACCCAACTCCGATA
TCCCGCCGCCCTCCGAACTCTGCAGGAGATGAAGCACGGCCGCACCGCCA
TGATCGGCATCACGGGCATGTACTTCCAGACCCTGGTCCAGGGACAGGGA
ATCCTCCACCAGCTCGGCGAGGCGTTCTCGACCCCCGACAGCGTGGCCAA
GGCCGGCTACTTCTTCAACCCTCTCTAA
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