mRNA_E-fasciculatus_F_contig11842.1447.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11842.1447.1
Unique NamemRNA_E-fasciculatus_F_contig11842.1447.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11842.1447.1 vs. uniprot
Match: D7FN97_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN97_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 4.070e-25
Identity = 63/137 (45.99%), Postives = 83/137 (60.58%), Query Frame = 1 
Query:    1 FKVFCQKALCSESLMFLLDAEAFSTLLQ--------GAPVDSAAA----------YDQFVEIVDMYIREHSQFEVNIECKTRNEILEATDRKTFLELTQQAGNTRLLDSAVKEVGKMLKDNLYAKFQATKEYKQIQD 357
            F+ +C+ ALCSESLMFL+DA+ F++ L         G   +SAA           ++QF  IVD YIRE S FEVNIE K RNEIL   DR +F  L        LL+ A K+V  ML++NLY KF+ T+++KQIQ+
Sbjct:   55 FEEYCRNALCSESLMFLVDADEFNSALHAVSKFSTAGKDPESAAVAVNECEHNPNFEQFAAIVDKYIREGSPFEVNIESKIRNEILREVDRASFERLNLD-DKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQE 190
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BLAST of mRNA_E-fasciculatus_F_contig11842.1447.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.350e-24
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 1 
Query:    1 FKVFCQKALCSESLMFLLDAEAFSTLLQGAPVDSAAAYDQFVEIVDMYIREHSQFEVNIECKTRNEILEATDRKTFLELTQQAGNTRLLDSAVKEVGKMLKDNLYAKFQATKEYKQIQD 357
            F  FC+KALCSESLMFL   + F   L  +  D    + +F EIVD YIR+ S FEVNIE KT+ +IL  T   +F EL        +LD AVKE+GKML++NLY KF++T+++K+I+D
Sbjct:  366 FGEFCRKALCSESLMFLTAGKDFHESLDASDADYDTIFARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDA-VCILDLAVKEIGKMLQENLYNKFRSTEQFKEIKD 483
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BLAST of mRNA_E-fasciculatus_F_contig11842.1447.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.240e-22
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 1 
Query:    1 FKVFCQKALCSESLMFLLDAEAFSTLLQGAPVDSAAAYDQFVEIVDMYIREHSQFEVNIECKTRNEILEATDRKTFLELTQQAGNTRLLDSAVKEVGKMLKDNLYAKFQATKEYKQI 351
            F+ FC+KALCSES++FL  A AF+  +  +  +    +  F++I D YI++ S FE+NIE KT++ I++ TD++ F +L       R LD+A KEVGKMLK+NLY KF+ T ++KQI
Sbjct:  311 FEEFCRKALCSESILFLKAAWAFNDSVYASTANEDTNFALFMDIFDKYIKDGSPFEINIESKTKSFIMKRTDKEAFKQLRLDDA-ARGLDAAAKEVGKMLKENLYDKFRQTDQFKQI 426
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BLAST of mRNA_E-fasciculatus_F_contig11842.1447.1 vs. uniprot
Match: A0A6H5K562_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K562_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.110e-12
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    1 FKVFCQKALCSESLMFLLDAEAFSTLLQGAPVDSAAAYDQFVEIVDMYIREHSQFEVNIECKTRNEILEATDRKTFLEL 237
            F  FC+KALC ES  FL+D   F + +  A      +Y++F+ IVD YI ++S FEVNI+ +T+ EIL   DR  +  L
Sbjct:   32 FGEFCRKALCHESFQFLVDVSKFKSSVHAAHQGGNDSYEEFIVIVDEYIEDNSNFEVNIDSRTKKEILGFGDRSAYASL 110
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BLAST of mRNA_E-fasciculatus_F_contig11842.1447.1 vs. uniprot
Match: A0A6H5K6R2_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R2_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.670e-10
Identity = 34/84 (40.48%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:    1 FKVFCQKALCSESLMFLLDAEAFSTLLQGAPVDSAAAYDQFVEIVDMYIREHSQFEVNIECKTRNEILEATDRKTFLELTQQAG 252
            F+ FCQKALC ESLMFL     F   +  +       +    +IV  Y++  S FEVNI+ KT++ IL    R+TF+ L Q  G
Sbjct:   89 FEEFCQKALCIESLMFLKAVMGFRGSVHASTASDDGNFTLLTDIVQKYVQSGSPFEVNIDSKTKSNILVKITRETFMRLPQVMG 172
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BLAST of mRNA_E-fasciculatus_F_contig11842.1447.1 vs. uniprot
Match: A0A6H5KD71_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD71_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 3.460e-5
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:    1 FKVFCQKALCSESLMFLLDAEAFSTLLQGAPVDSAAAYDQFVEIVDMYIREHSQFEVNIECKTRNEILEATDRKTFLELTQQAGNTR--LLDSAVKEVGKMLKDNLYAKFQATKE 339
            FK FC ++LC+ES  F++ A  +  +      D    Y+ F+ I + Y++  S  EVNI  K + +++   D   F  L    G++R  +L   +KE+ +ML++NL  KF+ T E
Sbjct:  169 FKHFCTRSLCAESWDFIVAACKYEEIS-----DPEEQYEMFLRITEEYLQPTSPQEVNIGSKMQAKMVSLQDSVKFSSLD---GDSRRNVLQEPLKEIVRMLEENLLNKFKQTPE 275
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BLAST of mRNA_E-fasciculatus_F_contig11842.1447.1 vs. uniprot
Match: A0A6H5JLH7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH7_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 4.760e-5
Identity = 37/115 (32.17%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:    1 FKVFCQKALCSESLMFLLDAEAFSTLLQGAPVDSAAAYDQFVEIVDMYIREHSQFEVNIECKTRNEILEATDRKTFLELTQQAGNTR--LLDSAVKEVGKMLKDNLYAKFQATKE 339
            F+ +C ++LC+ES  F++ A  +  +      D    Y  F+ I + Y+R  S  EVNI  K + +++   D   F  L    G++R  +L   +KEV +ML++NL  KF+ T E
Sbjct:  207 FEQYCMRSLCAESWDFIVAACKYEEIS-----DPEEQYKMFLRITEEYLRPTSPQEVNISSKMQAKMVSLQDSVKFSSLD---GDSRRNVLQEPLKEVVRMLEENLLNKFKQTPE 313
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11842.1447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FN97_ECTSI4.070e-2545.99RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K976_9PHAE3.350e-2449.58RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLA9_ECTSI2.240e-2246.15RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K562_9PHAE1.110e-1243.04RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K6R2_9PHAE4.670e-1040.48RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KD71_9PHAE3.460e-532.17RGS domain-containing protein n=3 Tax=Ectocarpus s... [more]
A0A6H5JLH7_9PHAE4.760e-532.17RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11842contigE-fasciculatus_F_contig11842:517..2063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1.7e-20
Seed eggNOG ortholog2880.D7FN97
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size358
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11842.1447.1prot_E-fasciculatus_F_contig11842.1447.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11842 517..2063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927696.0439768-CDS-E-fasciculatus_F_contig11842:516..5521622927696.0439768-CDS-E-fasciculatus_F_contig11842:516..552Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11842 517..552 +
1695995653.485587-CDS-E-fasciculatus_F_contig11842:516..5521695995653.485587-CDS-E-fasciculatus_F_contig11842:516..552Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11842 517..552 +
1622927696.0600355-CDS-E-fasciculatus_F_contig11842:1162..13721622927696.0600355-CDS-E-fasciculatus_F_contig11842:1162..1372Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11842 1163..1372 +
1695995653.495289-CDS-E-fasciculatus_F_contig11842:1162..13721695995653.495289-CDS-E-fasciculatus_F_contig11842:1162..1372Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11842 1163..1372 +
1622927696.079117-CDS-E-fasciculatus_F_contig11842:1952..20631622927696.079117-CDS-E-fasciculatus_F_contig11842:1952..2063Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11842 1953..2063 +
1695995653.503768-CDS-E-fasciculatus_F_contig11842:1952..20631695995653.503768-CDS-E-fasciculatus_F_contig11842:1952..2063Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11842 1953..2063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11842.1447.1

>prot_E-fasciculatus_F_contig11842.1447.1 ID=prot_E-fasciculatus_F_contig11842.1447.1|Name=mRNA_E-fasciculatus_F_contig11842.1447.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=119bp
FKVFCQKALCSESLMFLLDAEAFSTLLQGAPVDSAAAYDQFVEIVDMYIR
EHSQFEVNIECKTRNEILEATDRKTFLELTQQAGNTRLLDSAVKEVGKML
KDNLYAKFQATKEYKQIQD
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mRNA from alignment at E-fasciculatus_F_contig11842:517..2063+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11842.1447.1 ID=mRNA_E-fasciculatus_F_contig11842.1447.1|Name=mRNA_E-fasciculatus_F_contig11842.1447.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1547bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11842:517..2063+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCAAAGTCTTTTGCCAGAAGGCGCTCTGCAGCGAGGTGACTGGGCCATG
GAAATCTCGGTTGGTTCTCGCGTCTCTGAAAGCCCCCTGCTAGAAGCTTC
GCCTCACAGCAAGTTTCTGATGAGATGCAAGGATGATTTCAGCAACAGTT
TCCAACGGTTGTGGCCCAGAAGTGAGGTCGACGAGTTTGAAAATCGACTC
AGGCTACACCGGCCTTAAGATTCAACGATGAAACAACATTTGGATGCAAA
CCCGCCGTTCCGAGTAGAGCATGCGCCCGTTTTCTTTGCAGCACTGCTGT
TGCATCATGAATCAATCGCCTGTGCCCCCCCCCCCCCCCCCCCAACGTTC
GCATACAAGAAGAAGCTGTTGTGCATACCTCGCCATCTCGGAAAAGACCT
ATTGGAGAGCCCGACGAAGACGACTACATACTCTGCACATACCTGCCACA
TGAAGCAAACCGAACTGCGGAATACACATACTGTGTATGCAATTTTCTGG
TTCTTTGTGCGAATCGTTCTCGTTTGAGAGCTTTCGTTGCCATTCTCACG
CCGTCTCTGGGTGTCGCTACAACATCGGTGGTAGATTTGTCCCCGCCCGA
ATGGCAGGTTTTGATACCCTTCCCGTGTTGCTGTGGTGGAATGCAGTCAC
TCATGTTCTTGCTGGATGCGGAGGCATTTAGCACGTTGCTTCAAGGGGCG
CCCGTCGACAGTGCCGCTGCCTACGACCAATTTGTCGAGATCGTCGACAT
GTACATCCGGGAGCATTCGCAGTTTGAAGTAAATATCGAGTGCAAGACAC
GAAACGAAATTCTGGAGGCGACGGACAGGAAGACCTTTCTCGAACTCACC
CAGCAGGTGCGAAATGTCAGCGGACTATCCCTCTCCCTTGGTGTCTTGCA
TGTGCGCACTTTTGGGGGAAGTATGCTACTACGAATGTATGTTTCTACGC
AAAAGGTTGATAAACTCGTTCTCAGGGAGATAAACCCAAGTGAGTTGGCC
GTTTCCACGTAAGTGAGACACAGATGGTGCATCTTCTCACATGACTTACA
AACGATGGCGTAATGTCGGGCCGGCAGAGTAGGTACATAGATGATAGTTG
GTCGAGAATGGCAGCCCTCACACACTACATAGCCTACGAAGGAAGCGGCG
ATAGTATTCTAGTTTATGATATCTTCTTGCCTTCTTGCCGATCATCGGAT
GTCTGATCAAGGTATGTAGTGAATTCACGGCAGTCAAGGTAGTGAAGTCA
CGACTGTACTCTTGGCGAGGCGACCTCGACCGCATCACGAGGCTCGGCTG
TGGGCGCGTGTCCAAGGTACGTGTCTGAGAAGCATGTGAAACCATTTTCG
CCACAACCACAACGTCCTTCTGTGGACCACCGTCTGACGCGAACCCTCTC
CGCCCACCCTTCGTCTTGCATCACCTAATTGGTCAGGCGGGAAATACTCG
GTTGCTTGACTCAGCCGTCAAAGAGGTCGGTAAGATGCTGAAAGACAATC
TCTACGCCAAGTTCCAGGCCACCAAGGAGTACAAGCAGATCCAGGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11842:517..2063+

>mRNA_E-fasciculatus_F_contig11842.1447.1 ID=mRNA_E-fasciculatus_F_contig11842.1447.1|Name=mRNA_E-fasciculatus_F_contig11842.1447.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11842:517..2063+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCAAAGTCTTTTGCCAGAAGGCGCTCTGCAGCGAGTTCAAAGTCTTTTG
CCAGAAGGCGCTCTGCAGCGAGTCACTCATGTTCTTGCTGGATGCGGAGG
CATTTAGCACGTTGCTTCAAGGGGCGCCCGTCGACAGTGCCGCTGCCTAC
GACCAATTTGTCGAGATCGTCGACATGTACATCCGGGAGCATTCGCAGTT
TGAAGTAAATATCGAGTGCAAGACACGAAACGAAATTCTGGAGGCGACGG
ACAGGAAGACCTTTCTCGAACTCACCCAGCAGTCACTCATGTTCTTGCTG
GATGCGGAGGCATTTAGCACGTTGCTTCAAGGGGCGCCCGTCGACAGTGC
CGCTGCCTACGACCAATTTGTCGAGATCGTCGACATGTACATCCGGGAGC
ATTCGCAGTTTGAAGTAAATATCGAGTGCAAGACACGAAACGAAATTCTG
GAGGCGACGGACAGGAAGACCTTTCTCGAACTCACCCAGCAGGCGGGAAA
TACTCGGTTGCTTGACTCAGCCGTCAAAGAGGTCGGTAAGATGCTGAAAG
ACAATCTCTACGCCAAGTTCCAGGCCACCAAGGAGTACAAGCAGATCCAG
GACGCGGGAAATACTCGGTTGCTTGACTCAGCCGTCAAAGAGGTCGGTAA
GATGCTGAAAGACAATCTCTACGCCAAGTTCCAGGCCACCAAGGAGTACA
AGCAGATCCAGGAC
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