mRNA_E-fasciculatus_F_contig11836.1442.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11836.1442.1
Unique NamemRNA_E-fasciculatus_F_contig11836.1442.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11836.1442.1 vs. uniprot
Match: D7G4X2_ECTSI (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.560e-12
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 2 
Query:   47 RWCRRGCQASHAMVLSRWKCGSPTAWGAAMITDQE 151
            RW RRGCQAS A VLSRWKCGSPTAWGAAMITD E
Sbjct:  722 RWSRRGCQASRATVLSRWKCGSPTAWGAAMITDPE 756
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11836.1442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4X2_ECTSI2.560e-1288.57Transcription initiation factor TFIID subunit 2 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11836contigE-fasciculatus_F_contig11836:2834..4055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size183
Cds size183
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11836.1442.1prot_E-fasciculatus_F_contig11836.1442.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11836 2834..4055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927695.3619337-CDS-E-fasciculatus_F_contig11836:2833..28641622927695.3619337-CDS-E-fasciculatus_F_contig11836:2833..2864Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11836 2834..2864 -
1695995653.0633183-CDS-E-fasciculatus_F_contig11836:2833..28641695995653.0633183-CDS-E-fasciculatus_F_contig11836:2833..2864Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11836 2834..2864 -
1622927695.3767102-CDS-E-fasciculatus_F_contig11836:3104..32081622927695.3767102-CDS-E-fasciculatus_F_contig11836:3104..3208Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11836 3105..3208 -
1695995653.071762-CDS-E-fasciculatus_F_contig11836:3104..32081695995653.071762-CDS-E-fasciculatus_F_contig11836:3104..3208Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11836 3105..3208 -
1622927695.3914025-CDS-E-fasciculatus_F_contig11836:4007..40551622927695.3914025-CDS-E-fasciculatus_F_contig11836:4007..4055Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11836 4008..4055 -
1695995653.0800748-CDS-E-fasciculatus_F_contig11836:4007..40551695995653.0800748-CDS-E-fasciculatus_F_contig11836:4007..4055Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11836 4008..4055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11836.1442.1

>prot_E-fasciculatus_F_contig11836.1442.1 ID=prot_E-fasciculatus_F_contig11836.1442.1|Name=mRNA_E-fasciculatus_F_contig11836.1442.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=61bp
YHYKKKANVINLVVEQVVPPWMSGIACHGPLTVEVWESDSMGGGNDNGPR
RFREQLPPSRD
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mRNA from alignment at E-fasciculatus_F_contig11836:2834..4055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11836.1442.1 ID=mRNA_E-fasciculatus_F_contig11836.1442.1|Name=mRNA_E-fasciculatus_F_contig11836.1442.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1222bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11836:2834..4055- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACCACTACAAGAAGAAGGCGAACGTCATCAACCTCGTCGTAGAGCAGGC
GAGAACATCAAGTACTCGTGGCAACAGCAGTTCACTTCCACGTTCCATGC
TGCCTACCTTCTTTTCGTGCTTCTGTATTGCCGACCGATGTCTGTTCGCT
GCGGCCATTGTCGTTGCTGCTTTCCCTCGAAGGGCTAGACCATTTTACAC
GTGAACACACCAGAAGGCCTAGTTCGTTCAGTGTCATATGCGTCGGCCCG
GCAGTTGCCTGTTGAGGTGTATGGCGCTGGAGGACGTTCGTTGTCCACCT
GGTTTTACGCGTTGACGTCGGACCAAAGCGTCGCCACCTTGGACACAACA
CAACACCCGTATGTTCCCCCTCCCCGCAAAACCGAGCAGCAGCCCCTACT
GACGCAGTTGTCGCATGTCACTGTCGAGGCAATTACGTGTACCACATTCT
GTCTGTCTAGATTCCACCATGGGGTCGTCGGCACGGCCCCCCTTGTTTTG
TCTGTGGCGCAGTACAGTACAGGGCACTGCGCGTCCTGGCGATGTACCAC
CACTTCGGGCACTGCTGCAGCTTCTGGGTTGGATCAGCCATTTTGGCGTC
TTGATGATCATCATATGCATGCCATTGTGTGGAATATCTCGTCGTTTTGT
GTCTCGACAGCTGGGGTTTGTAATGAATCCGCAGTGGTTAGCAGTGTAAG
CATAATCAGGGTCCCACCCGCACTATGGGAAGCCCCGTCGATTGACAATG
TGCTGATGTATGTTCAGCTCTGCGGCCTGACATGGTTTGCGTCTCACATA
CTACACTGACAATGTGCCTGTTCTATTCATGGATGAATGGATGTTAGGTG
GTGCCGCCGTGGATGTCAGGCATCGCATGCCATGGTCCTCTCACGGTGGA
AGTGTGGGAGTCCGACAGCATGGGGGGCGGCAATGATAACGGACCAAGAA
GGTACCCAATACATGACTCTGCCTCGAGTTTCGGTTATGGGTCGCTGTTG
TCACTGCCGTAGTTGCTGTTGTTGTCTTGTTGTACTTGTTGGTGGTGTTT
CACCTGCTGCTGCTCCGTCTTTTGGCCTCAACGCTTGGGTGCAAGATAAC
GACAGGACAAACTATTGACAGACGTCTGTTTCCGTTTCCACGCTTGATTC
GTTTGTTGGTATCTTCGTTATTCGTTTCTCGTGTGTCCTAGGTTTCGCGA
ACAGCTGCCTCCAAGCCGTGAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11836:2834..4055-

>mRNA_E-fasciculatus_F_contig11836.1442.1 ID=mRNA_E-fasciculatus_F_contig11836.1442.1|Name=mRNA_E-fasciculatus_F_contig11836.1442.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11836:2834..4055- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACCACTACAAGAAGAAGGCGAACGTCATCAACCTCGTCGTAGAGCAGTA
CCACTACAAGAAGAAGGCGAACGTCATCAACCTCGTCGTAGAGCAGGTGG
TGCCGCCGTGGATGTCAGGCATCGCATGCCATGGTCCTCTCACGGTGGAA
GTGTGGGAGTCCGACAGCATGGGGGGCGGCAATGATAACGGACCAAGAAG
GTGGTGCCGCCGTGGATGTCAGGCATCGCATGCCATGGTCCTCTCACGGT
GGAAGTGTGGGAGTCCGACAGCATGGGGGGCGGCAATGATAACGGACCAA
GAAGGTTTCGCGAACAGCTGCCTCCAAGCCGTGATGTTTCGCGAACAGCT
GCCTCCAAGCCGTGAT
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