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Homology
BLAST of mRNA_E-fasciculatus_F_contig11822.1429.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI) HSP 1 Score: 326 bits (836), Expect = 2.580e-100 Identity = 193/257 (75.10%), Postives = 198/257 (77.04%), Query Frame = 1
Query: 373 CGATYTHVESRPGNGGSGTSGMLHHLFKKHPLIHAEIIRANSS-KLRKAEGTVLKESAASSXXXXXXXXXXXXXXXXXXXPPQPHHPSSSGSALAQLRACSLTGGGGS-----ALPSPPMSSEDSLPHDRRFVLMCALRTLDPGSLCSSLGHRLFVGGLAPGYGAGRRLARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVNAILQDLCAGVRREVASALRAHSESCRRLGWSGPFVGLQVDSTGVPGGEG 1125
CGATYTHVESRPGNGGSGTSGMLHHLFKKHPLIHAEIIRANSS K+RKAEG V+KESAASSXXXXXXXXXXX PQPHHPSS GSALAQLRACSL G ALPSPPMS+ED LPHDRRFVLMCAL+TLDPGSLCS LGHRLFVGGLAPGYGAGRRLAR T NAILQDLCAGVRREVASALRAHSESCRRLGWSGPFVGLQVDSTG+PGGEG
Sbjct: 9 CGATYTHVESRPGNGGSGTSGMLHHLFKKHPLIHAEIIRANSSSKMRKAEGAVVKESAASSXXXXXXXXXXXKGR------PQPHHPSSLGSALAQLRACSLPGXXXXXXXXXALPSPPMSAEDCLPHDRRFVLMCALQTLDPGSLCSDLGHRLFVGGLAPGYGAGRRLARRRSGLAPSGSSYAASTAVTEGANGARAAG-----TANAILQDLCAGVRREVASALRAHSESCRRLGWSGPFVGLQVDSTGLPGGEG 254
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1141 |
| Cds size | 1140 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11822.1429.1 >prot_E-fasciculatus_F_contig11822.1429.1 ID=prot_E-fasciculatus_F_contig11822.1429.1|Name=mRNA_E-fasciculatus_F_contig11822.1429.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=380bp
VRRHPCYCYPTAQQQQQQQPPPSLPPPPAALPPVPIDGSSNNNGSAAAAA
AAPASSMTSPAADNHQQQQLYSPSGRKRKQRTSGVWKYFEQFPPMAPKGR
NVRCTVLIDVPADPALGLPQRSVRCGATYTHVESRPGNGGSGTSGMLHHL
FKKHPLIHAEIIRANSSKLRKAEGTVLKESAASSSSSSIGNGSGSGSGGG
SNEPPQPHHPSSSGSALAQLRACSLTGGGGSALPSPPMSSEDSLPHDRRF
VLMCALRTLDPGSLCSSLGHRLFVGGLAPGYGAGRRLARRRRNNGLLAPS
GSSYAASTTVTTEGEANGGGGGGTVNAILQDLCAGVRREVASALRAHSES
CRRLGWSGPFVGLQVDSTGVPGGEGGGGGG back to topmRNA from alignment at E-fasciculatus_F_contig11822:309..4006+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig11822.1429.1 ID=mRNA_E-fasciculatus_F_contig11822.1429.1|Name=mRNA_E-fasciculatus_F_contig11822.1429.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3698bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11822:309..4006+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTAGACGTCACCCCTGCTACTGCTACCCCACAGCTGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCCGCCGCCGCCGCTACCGCCACCGCCNNNNNNNNNN
AGCAGCAGCAGCAGTCACACATGGCAACCGGTGCGGCGGCGGTTGCATCG
GATGGACCTTCTCTGGCCGCTGCTTCTTCCTCCTCAGTGGGGGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGTTGCCGCTGCGCCGGTGTCGACAGCAG
TGGTTTCCGCTGCTGTTTCCCTGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCCGCCGCCGTCGCTACCGCCACCGCCCGC
GGCACTGCCCCCGGTCCCCATCGACGGCTCCAGCAACAACAATGGCAGCG
CTGCTGCTGCTGCCGCAGCACCGGCATCATCGATGACATCGCCCGCCGCC
GACAATCATCAGCAGCAGCAGCTTTATTCCCCCTCCGGGAGGAAGCGCAA
GCAGCGGACGTCCGGGGTGTGGAAGTACTTCGAGCAGTTCCCGCCAATGG
CACCGAAAGGCCGGAACGTGCGCTGTACCGTGCTGATCGATGTGCCGGCC
GACCCTGCCTTGGGACTGCCGCAACGCTCGGTCAGGTGCGTGCGAGAGAG
AGAGAGAGAGCGTAGCGCAGCACGGCCGACATGCATGATGATGAGTCGAA
CCAAAGGACAGCTGAAAACGCGCGTGGGTGCGTTGTTGTGGGATACATTG
TAGTAAAGGTACTCGACGGTTATAGTGCGTAAACTATTAAATAGTAGATC
CTTGACATTCAACATCCAATGTTGATACAAGTGTATCAAGGTATGTAACA
CATGCACCACTACTGCCGTACGGCGGTTTACATATGAAGGTGGCAGACAT
CCCTATGCATATGGATGGTCACAGTAAATACATCGCACTAACGTAAGACA
AGATACCGCACCAATAATGATCCATTTTGTAACATTTGTGACCCTGTGGT
ACAGAACTCCCCCCCTGCCTTCCTGCCATAGGCGACACAAGATACCGCAC
CCCCTGGACCCCGATTTCCAAAGCTCTCGATTCCACAGCAGTAGAGAGAG
AGAGGGGCGACATTGGAATCGTCTCGTCGGGATCATTCCAAAAACGTACA
ATATCACGCTCTATTTTTCTATTTTTTTTACTTATTTATTTTCTTGACAT
GACACAACGAATCCATCTCTATCTGAGAAAAAATCCATCTCTAGTCTATC
TAAGAAAAAAAGTCTATAAGATAGATTAGCAATGATTTTGATTTTTTGCT
ATGTTCGCATGCTCTGTCGTGGAGCAGTCAAGCTCTGAAAATCAGTAGGG
GGTGTGGTATCTTGTGTCACACCTACGGAGATCTACCACGTGTGATTCAT
TCTTCTCGGGACTGAGGAATGTAGACTGTAAATATATACGTGATACATGT
ACCTGAGGTTATTTGGGGTGGAGTTCAAAATTTAGTTCCAATATAATAGT
GCTTCCAGCGTGGAAGTCCTTCTGCTGTAGACTCCCACGTTATCTTGATT
TGCTCACGTCCTGACCTCGTCAATGTTTTCGAGGAAACGGCTTCATGTCG
CCGCAATCCATCCACGACTCGACCTTCGCTCCAAATTGATGTACCGGCGT
CGTCTGTCTCACTGCTGGACGCAGCCCTGCCGGAAGCTCGCGCACAGCAG
TAATATCTTCCACAACAACAAACTGCTGAACTCTAGTGCTTTAGGGGCTT
TGGCCGGCCGCGGCTTTGGAGACGGGCGGTTTTCCTCCACCCGTCGACAG
CCGCGCATCATGTCATACCCACCGGTGCCCGCGGCTAGTTTATTTTCCAC
GGCCTCGGGTAGGATGCACACGGCTCTAGGGATGGGCGAGCGTGCGGTGG
TTACTCTGAGCACAGCGACTCCGCTTCCCGGCGATTCTTGTTGACGTTCA
CCAACGTCATCCACGTTTCTCGTGGCAGCGGCTATGTATGTAGATATTTG
GCAGCCTGCCAGAGAGTAAGTGCCTCACACCCAGCGACGTTCTTGCAGAG
GTCCCCTAAGCGCCTGCTGCATGGAAGAGCGGCGGCTGCCAGCAAGATCG
ACCCTCATGTCTGTACAGTAGAGTTAGCATTGCCCTGTGCCGGACGCCAG
CCCAAGATTATTGGCGCCTCCTTAGCCTCTAAAGAAAAAAGATCGATCGC
CGCCATTCGGACGGCTTGCTTCCTGCATGTCATGCGCGGATACTCCACGT
AGGTAAAATCTACCACCCTCTTTTTTGTCGCGTAACGGGCCGGAGAAAAC
CCGTACTCCTGCCGTTCATGCTGCGTGGGTTACTACGTCGATTGCACGTT
CCTTCTCTCCTTCAAAAGCTGTATCCAGCACTTTCCACACAAGTTTAAAT
GTGCCTACTATATACGGTTGTCATCACCCTGCAGGTGCGGGGCAACGTAC
ACCCATGTCGAGTCGAGACCAGGCAACGGCGGGTCGGGCACGTCGGGCAT
GCTGCACCACCTCTTCAAGAAGCACCCGCTCATCCACGCCGAGATCATCA
GGGCCAACTCCTCCAAGCTGCGGAAGGCAGAAGGTGATCGATCGACCCGC
AAATATCTTCTTATCAAGTGTTTCAGGGGACGTGGAGTTTTTTATATTCG
TCTCCCCAAAACTAAAAACTAAAAACATGTAATTAATTATTTAATTAAAT
ATGGCACCCCACCCATATTATATGTATATTTATTTTTCGTGCCAAAAAAT
GATTTGTTAAATACCCGAAACGAAAACAAAACACGCGCAACCTATCGTGA
CGTCGGGGGGAAGGTGAGGGTCGAGGAATGCAGTCAACGCAGGAGTCGCC
CCTGTACAGCGATTCCACCCCGTTTTCGCACCCCGCCCGTGTTTACAGGT
TCGTCTTTTTCCCCAAACCGCTGTTGCTCGCTCGGATTCTCCCCCATGTG
CTTGCTATTTTACCCGGCGACACCAACGGCATCCAGTGCTGCGATTCCGG
CTCACCACGCAGACCTGTTGTTACCCTCTCCGCCCATCTTAGACGTACCC
CGCTCTCTGTGGACACACTCTCGCGCAGGAACGGTACTGAAGGAGTCCGC
CGCGAGCAGCAGCAGCAGCAGCATTGGCAACGGCAGCGGCAGCGGCAGCG
GAGGCGGGAGCAACGAACCGCCACAACCTCATCACCCCTCCTCGTCGGGC
TCGGCGTTGGCTCAGCTGAGGGCTTGCTCGCTCACCGGCGGCGGCGGCAG
CGCGCTCCCCTCGCCGCCAATGTCCTCGGAGGACTCCCTGCCGCACGACC
GCCGCTTCGTGCTCATGTGCGCGCTCCGGACGCTCGACCCGGGCTCCCTG
TGCTCGAGCCTCGGGCACAGGCTGTTCGTTGGCGGACTGGCCCCCGGCTA
CGGGGCAGGCCGGCGCCTGGCCCGCCGCCGCCGCAACAACGGCCTCCTCG
CTCCAAGCGGCAGCAGTTACGCCGCCTCCACTACTGTCACCACCGAGGGG
GAAGCAAACGGCGGCGGCGGCGGCGGTACGGTCAACGCTATCCTGCAGGA
CCTGTGCGCGGGTGTGAGGCGAGAAGTGGCATCGGCGCTGAGGGCCCACA
GCGAGTCGTGCCGGAGACTGGGGTGGTCCGGGCCGTTCGTTGGACTGCAG
GTGGACTCGACGGGCGTGCCGGGGGGGGAGGGCGGCGGCGGCGGCGGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig11822:309..4006+ >mRNA_E-fasciculatus_F_contig11822.1429.1 ID=mRNA_E-fasciculatus_F_contig11822.1429.1|Name=mRNA_E-fasciculatus_F_contig11822.1429.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2280bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11822:309..4006+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTAGACGTCACCCCTGCTACTGCTACCCCACAGCTGTTAGACGTCACCC
CTGCTACTGCTACCCCACAGCTCAGCAGCAGCAGCAGCAGCAGCCGCCGC
CGTCGCTACCGCCACCGCCCGCGGCACTGCCCCCGGTCCCCATCGACGGC
TCCAGCAACAACAATGGCAGCGCTGCTGCTGCTGCCGCAGCACCGGCATC
ATCGATGACATCGCCCGCCGCCGACAATCATCAGCAGCAGCAGCTTTATT
CCCCCTCCGGGAGGAAGCGCAAGCAGCGGACGTCCGGGGTGTGGAAGTAC
TTCGAGCAGTTCCCGCCAATGGCACCGAAAGGCCGGAACGTGCGCTGTAC
CGTGCTGATCGATGTGCCGGCCGACCCTGCCTTGGGACTGCCGCAACGCT
CGGTCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCGTCGCTACCGCCAC
CGCCCGCGGCACTGCCCCCGGTCCCCATCGACGGCTCCAGCAACAACAAT
GGCAGCGCTGCTGCTGCTGCCGCAGCACCGGCATCATCGATGACATCGCC
CGCCGCCGACAATCATCAGCAGCAGCAGCTTTATTCCCCCTCCGGGAGGA
AGCGCAAGCAGCGGACGTCCGGGGTGTGGAAGTACTTCGAGCAGTTCCCG
CCAATGGCACCGAAAGGCCGGAACGTGCGCTGTACCGTGCTGATCGATGT
GCCGGCCGACCCTGCCTTGGGACTGCCGCAACGCTCGGTCAGGTGCGGGG
CAACGTACACCCATGTCGAGTCGAGACCAGGCAACGGCGGGTCGGGCACG
TCGGGCATGCTGCACCACCTCTTCAAGAAGCACCCGCTCATCCACGCCGA
GATCATCAGGGCCAACTCCTCCAAGCTGCGGAAGGCAGAAGGTGCGGGGC
AACGTACACCCATGTCGAGTCGAGACCAGGCAACGGCGGGTCGGGCACGT
CGGGCATGCTGCACCACCTCTTCAAGAAGCACCCGCTCATCCACGCCGAG
ATCATCAGGGCCAACTCCTCCAAGCTGCGGAAGGCAGAAGGAACGGTACT
GAAGGAGTCCGCCGCGAGCAGCAGCAGCAGCAGCATTGGCAACGGCAGCG
GCAGCGGCAGCGGAGGCGGGAGCAACGAACCGCCACAACCTCATCACCCC
TCCTCGTCGGGCTCGGCGTTGGCTCAGCTGAGGGCTTGCTCGCTCACCGG
CGGCGGCGGCAGCGCGCTCCCCTCGCCGCCAATGTCCTCGGAGGACTCCC
TGCCGCACGACCGCCGCTTCGTGCTCATGTGCGCGCTCCGGACGCTCGAC
CCGGGCTCCCTGTGCTCGAGCCTCGGGCACAGGCTGTTCGTTGGCGGACT
GGCCCCCGGCTACGGGGCAGGCCGGCGCCTGGCCCGCCGCCGCCGCAACA
ACGGCCTCCTCGCTCCAAGCGGCAGCAGTTACGCCGCCTCCACTACTGTC
ACCACCGAGGGGGAAGCAAACGGCGGCGGCGGCGGCGGTACGGTCAACGC
TATCCTGCAGGACCTGTGCGCGGGTGTGAGGCGAGAAGTGGCATCGGCGC
TGAGGGCCCACAGCGAGTCGTGCCGGAGACTGGGGTGGTCCGGGCCGTTC
GTTGGACTGCAGGTGGACTCGACGGGCGTGCCGGGGGGGGAGGGCGGCGG
CGGCGGCGGCGAACGGTACTGAAGGAGTCCGCCGCGAGCAGCAGCAGCAG
CAGCATTGGCAACGGCAGCGGCAGCGGCAGCGGAGGCGGGAGCAACGAAC
CGCCACAACCTCATCACCCCTCCTCGTCGGGCTCGGCGTTGGCTCAGCTG
AGGGCTTGCTCGCTCACCGGCGGCGGCGGCAGCGCGCTCCCCTCGCCGCC
AATGTCCTCGGAGGACTCCCTGCCGCACGACCGCCGCTTCGTGCTCATGT
GCGCGCTCCGGACGCTCGACCCGGGCTCCCTGTGCTCGAGCCTCGGGCAC
AGGCTGTTCGTTGGCGGACTGGCCCCCGGCTACGGGGCAGGCCGGCGCCT
GGCCCGCCGCCGCCGCAACAACGGCCTCCTCGCTCCAAGCGGCAGCAGTT
ACGCCGCCTCCACTACTGTCACCACCGAGGGGGAAGCAAACGGCGGCGGC
GGCGGCGGTACGGTCAACGCTATCCTGCAGGACCTGTGCGCGGGTGTGAG
GCGAGAAGTGGCATCGGCGCTGAGGGCCCACAGCGAGTCGTGCCGGAGAC
TGGGGTGGTCCGGGCCGTTCGTTGGACTGCAGGTGGACTCGACGGGCGTG
CCGGGGGGGGAGGGCGGCGGCGGCGGCGGC back to top
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