mRNA_E-fasciculatus_F_contig11792.1408.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11792.1408.1
Unique NamemRNA_E-fasciculatus_F_contig11792.1408.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11792.1408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11792contigE-fasciculatus_F_contig11792:1901..4274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size569
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11792.1408.1prot_E-fasciculatus_F_contig11792.1408.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11792 3951..4274 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927691.2976742-UTR-E-fasciculatus_F_contig11792:1900..20571622927691.2976742-UTR-E-fasciculatus_F_contig11792:1900..2057Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11792 1901..2057 +
1695995651.1124756-UTR-E-fasciculatus_F_contig11792:1900..20571695995651.1124756-UTR-E-fasciculatus_F_contig11792:1900..2057Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11792 1901..2057 +
1622927691.3126385-UTR-E-fasciculatus_F_contig11792:3864..39501622927691.3126385-UTR-E-fasciculatus_F_contig11792:3864..3950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11792 3865..3950 +
1695995651.1252391-UTR-E-fasciculatus_F_contig11792:3864..39501695995651.1252391-UTR-E-fasciculatus_F_contig11792:3864..3950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11792 3865..3950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927691.3271706-CDS-E-fasciculatus_F_contig11792:3950..42741622927691.3271706-CDS-E-fasciculatus_F_contig11792:3950..4274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11792 3951..4274 +
1695995651.1391795-CDS-E-fasciculatus_F_contig11792:3950..42741695995651.1391795-CDS-E-fasciculatus_F_contig11792:3950..4274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11792 3951..4274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11792.1408.1

>prot_E-fasciculatus_F_contig11792.1408.1 ID=prot_E-fasciculatus_F_contig11792.1408.1|Name=mRNA_E-fasciculatus_F_contig11792.1408.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
MAVHTLAAITNSDLPQRSASGLTTTPLAFRHKYLTRRKRSAAAITRMPAT
PGGGAGEHNSNSSGGGGGGGGGGGGASVAAPGSSDRQQRPPDVGGGGASS
SMLVDGDG
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mRNA from alignment at E-fasciculatus_F_contig11792:1901..4274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11792.1408.1 ID=mRNA_E-fasciculatus_F_contig11792.1408.1|Name=mRNA_E-fasciculatus_F_contig11792.1408.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2374bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11792:1901..4274+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACCTTTCGAGGCCAATGTCCACCCACTCAGAAAGTCTGACAGCTCGAAT
TGTGGAGAGGCTGTGGGACACGCTTCTATAAGTACTGTCTCAGAGCACAC
GGCGCTCCGGGTGCGGCACGGAGAGGGAGAGAAGGAGAGTCCGACAGGGA
CCGTCAGGTGAGGAAAAGCTTCAAGCGCGTTTGGAGGTCTAAACTACAGC
AGTGGGTACATACCGCCTAGGTGGCGCGGAGTCGTATCCGTACGAGTGGG
TGTTCCTGCGCGTTACGCCGCCTTCTTTGGATTGTGGCAACACACCAGCC
GGCGGCAGCGGGGTGCAGGGAAGAGCACCACCGCCTGCCTCGTTGTCGAG
CGTTGGCGTGCACCTGTACCAAGCAAGAAGCAGAGTTCTAAAACCGGCCT
AGGTACTCCGATACGCGTGTAGCATACCAGCAGCAGGCAGCAGTGTTTTC
TCTCTGATGATAATCCCGGGGTGTGTACTGGTACATGCTGCTATAAATAC
GTGCGTTTTTCTTCTGGCGCTGATGGTCGTGCGAGGTAGACCGGGCACCA
CGGGCAGGTTGGACAAAGAGGGCGACTACATCATGCTACCACAGCGGACG
TCGCGGCCTTTGAGTGATGTCCCCCGCCGCCGTTCTTGTTGCACACACGT
GTCTCTTTTTTTCTTTCCCAAACCTCGACGCACGGCGCAAGTTGAACACG
GGCGATGACGGGGAATGACCAGTCATGTTTTCTGACGGGCCGTTCAGACT
ACATGTACTTGACGGATTTTCTGGGACAATCTTTACAATGGAACGCAATT
TCTGGAGATCTAACAAGAAGCAAGCCACAGACACTAACGTTACCACAGAA
GACCACGCTGCTGCTGCTGCTGCTGCTGCGGAGCTTTGCTTCGGAGTATT
TAGTCAACAGCCTAGCCAAGCCCCCCTTGTTGTACCCAGCGCCAGGATGG
TAACCTGATTCCCGAAGCGGTCTAGATACTGAATTGGGTCCGGTTTTGTA
GATCTCTGCCTTTTCGGTCCACACAGAAATACCTTTACCACTGCTGTGCC
ACTTGCCCCACGCGCAGCAGTCATTTTCTACCTAGTCGCTGAACCGGTGC
TGTTGTTGTGTCAGACCTACTGACTCACGATGACCCAGAGTGGTCGCCAA
TAATATCCCGATTGGGGTGATGAGCATGAAAATCACGCCACTGATTTGCG
TTGTGCGAAGAGTCAGCCGTCGTTCATGACACAGATGACACGTGTTCGTG
GGACGGCACCAGTATGTTGCTCTCGTGGTGCTGTTGCTGTTGCTGTTGTT
GTCTTCAAGGAGGCGTGCAGCAATTGAGAGAACGACAAAATAGCCGGTGT
GTGGTGTGGTTTTCATACGATTCCTGTCCGACAGCAGAGGCTGGTATCCT
TCTTTCGTTCTCCGCTGTGTTTTTTACAACATTGAGGCCGGGCGCCGCCC
CGCTCATACACGGATACACCTCTGGAGGTTGGTTCCGTTAGCCGCTGCTC
TTGCTGGCACACGTAACCTTTCTCCCCCTTTTCTACGACGAATAGACAAA
CGCCACGCCCCACGTACACACACCGTGCGTTGTGTTTTAACATGCCCCGA
TGTGTCATGGGCGTCTTGCACCCCGTTTCAGCATCGGCAGATAAAGGTCC
CGAAGAGGCCTGAGCAAGTTGTTGTCCATTCGGGGCCTCATCTCTCTCTC
TCTCGCTCTCTCGCGCGCGCGTCATGCCCGCGGTCGATAGCAAAAGACAC
GCGGAACCGGGGTTTGCTGTTTTGATCCGGTGCCGTGAGAGTATGCACGC
GTATATTGCAATACCAAGAGGCTGAATGCCGCCAACAACCACTCTCGACA
TTATTATTGGCCTTGTCCCTTGCCATACCCGTTGACGTCTCTTTCTCTCT
CTCTCTCTCTCTGTCGCTCTCTCTGCCGCTTGTCCCGCTTCATTTTTTCT
GTTCACCCTCCCAGGTGGTTTGGTTCCCCCCTTATTCGGAGATCCCGTTG
ATCGGCGATCCCCCAAGACCCCCCACCCGCCGCCCGCTAGGCGGAGACCG
ATGGCAGTACACACCCTCGCGGCCATTACCAACAGCGACCTTCCCCAGCG
GTCAGCCTCGGGGCTCACGACCACACCCTTAGCCTTCCGGCACAAGTATC
TCACGCGCCGAAAACGTTCCGCTGCGGCAATTACCAGAATGCCCGCCACG
CCGGGCGGTGGCGCCGGCGAACACAATAGCAATTCTTCAGGCGGCGGCGG
CGGCGGCGGCGGCGGTGGTGGTGGCGCTAGCGTCGCCGCGCCGGGTTCGT
CAGACAGGCAGCAGCGGCCGCCAGATGTAGGAGGAGGTGGTGCGTCGTCG
AGCATGCTCGTCGACGGTGATGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11792:1901..4274+

>mRNA_E-fasciculatus_F_contig11792.1408.1 ID=mRNA_E-fasciculatus_F_contig11792.1408.1|Name=mRNA_E-fasciculatus_F_contig11792.1408.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11792:1901..4274+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGTACACACCCTCGCGGCCATTACCAACAGCGACCTTCCCCAGCG
GTCAGCCTCGGGGCTCACGACCACACCCTTAGCCTTCCGGCACAAGTATC
TCACGCGCCGAAAACGTTCCGCTGCGGCAATTACCAGAATGCCCGCCACG
CCGGGCGGTGGCGCCGGCGAACACAATAGCAATTCTTCAGGCGGCGGCGG
CGGCGGCGGCGGCGGTGGTGGTGGCGCTAGCGTCGCCGCGCCGGGTTCGT
CAGACAGGCAGCAGCGGCCGCCAGATGTAGGAGGAGGTGGTGCGTCGTCG
AGCATGCTCGTCGACGGTGATGGCATGGCAGTACACACCCTCGCGGCCAT
TACCAACAGCGACCTTCCCCAGCGGTCAGCCTCGGGGCTCACGACCACAC
CCTTAGCCTTCCGGCACAAGTATCTCACGCGCCGAAAACGTTCCGCTGCG
GCAATTACCAGAATGCCCGCCACGCCGGGCGGTGGCGCCGGCGAACACAA
TAGCAATTCTTCAGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGCG
CTAGCGTCGCCGCGCCGGGTTCGTCAGACAGGCAGCAGCGGCCGCCAGAT
GTAGGAGGAGGTGGTGCGTCGTCGAGCATGCTCGTCGACGGTGATGGC
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