mRNA_E-fasciculatus_F_contig11781.1402.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11781.1402.1
Unique NamemRNA_E-fasciculatus_F_contig11781.1402.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11781.1402.1 vs. uniprot
Match: A0A6H5K9D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.570e-23
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = -3 
Query:    2 SCYRTTPGFIAPRPLVVGAGGAANDGHGRRRSTAAIGQAWRGLRTSAPISRFFSVAQGAGAGDNNRPGASDFVGSG 229
            SCY+T PGF+A RPL  GAGGA NDGHGRR+STA +G+ WRGLR SAP++R+ SVAQGAG GDN RPGASDFVG G
Sbjct:  211 SCYKT-PGFVALRPLAGGAGGA-NDGHGRRQSTAVVGEGWRGLRISAPVARY-SVAQGAGTGDNERPGASDFVGGG 283
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11781.1402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9D2_9PHAE7.570e-2373.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11781contigE-fasciculatus_F_contig11781:3322..4026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size705
Cds size477
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927690.6388206-UTR-E-fasciculatus_F_contig11781:3321..35491622927690.6388206-UTR-E-fasciculatus_F_contig11781:3321..3549Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11781 3322..3549 +
1695995650.7423182-UTR-E-fasciculatus_F_contig11781:3321..35491695995650.7423182-UTR-E-fasciculatus_F_contig11781:3321..3549Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11781 3322..3549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927690.6517365-CDS-E-fasciculatus_F_contig11781:3549..40261622927690.6517365-CDS-E-fasciculatus_F_contig11781:3549..4026Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11781 3550..4026 +
1695995650.7530465-CDS-E-fasciculatus_F_contig11781:3549..40261695995650.7530465-CDS-E-fasciculatus_F_contig11781:3549..4026Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11781 3550..4026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11781.1402.1prot_E-fasciculatus_F_contig11781.1402.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11781 3550..4026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11781.1402.1

>prot_E-fasciculatus_F_contig11781.1402.1 ID=prot_E-fasciculatus_F_contig11781.1402.1|Name=mRNA_E-fasciculatus_F_contig11781.1402.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=159bp
MMTTRGGGAKSDAPRGWSRGGTFWLLLSTTILLPLLLLLLLLPAPPAASV
LVPLLLLLLLLLLRRRLLSKLSPEKPAVLCRRRPFSLRYRTPPSTPTLPP
PPPPLPLLPPLPRLLLSGGPGPTRRTQLQRSFPGRWRRAARATPEQPLAA
PRDESWCSC
back to top

mRNA from alignment at E-fasciculatus_F_contig11781:3322..4026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11781.1402.1 ID=mRNA_E-fasciculatus_F_contig11781.1402.1|Name=mRNA_E-fasciculatus_F_contig11781.1402.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=705bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11781:3322..4026+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCGCTCCCCACGAAATCAGAGGCCCCCGGCCGGTTGTTGTCACCGGCC
CCTGCGCCTTGCGCTACCGAAAAGAATCGAGAGATGGGGGCGCTAGTGCG
CAGACCTCTCCAGGCTTGGCCGATTGCAGCGGTGCTCCGTCGCCGTCCGT
GCCCATCGTTCGCCGCTCCTCCTGCCCCGACAACGAGGGGACGGGGGGCG
ATGAACCCCGGGGTGGTTCTGTAGCAGGATGATGACGACGCGAGGAGGCG
GCGCGAAGAGCGACGCCCCGCGGGGGTGGTCGCGTGGCGGAACGTTTTGG
CTGCTGCTCTCGACAACGATACTCCTCCCCCTCCTCCTCCTTCTCCTCCT
CCTACCCGCGCCCCCCGCCGCTTCGGTGCTGGTGCCGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTCCGCCGGCGGTTGTTGTCGAAACTCTCGCCCGAA
AAGCCCGCCGTGCTGTGTCGTCGACGACCCTTCTCCTTGCGGTACCGTAC
CCCCCCGTCGACCCCGACCCTGCCGCCGCCGCCGCCGCCGCTGCCGCTTC
TGCCGCCGCTGCCGCGACTGCTACTCTCCGGCGGGCCGGGTCCGACGCGA
CGGACGCAACTACAACGTTCGTTCCCCGGGCGCTGGCGGCGAGCAGCAAG
AGCAACGCCAGAGCAGCCCCTTGCTGCGCCGAGAGACGAATCTTGGTGTT
CCTGT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11781:3322..4026+

>mRNA_E-fasciculatus_F_contig11781.1402.1 ID=mRNA_E-fasciculatus_F_contig11781.1402.1|Name=mRNA_E-fasciculatus_F_contig11781.1402.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=954bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11781:3322..4026+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGACGACGCGAGGAGGCGGCGCGAAGAGCGACGCCCCGCGGGGGTG
GTCGCGTGGCGGAACGTTTTGGCTGCTGCTCTCGACAACGATACTCCTCC
CCCTCCTCCTCCTTCTCCTCCTCCTACCCGCGCCCCCCGCCGCTTCGGTG
CTGGTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCGCCGGCGGTT
GTTGTCGAAACTCTCGCCCGAAAAGCCCGCCGTGCTGTGTCGTCGACGAC
CCTTCTCCTTGCGGTACCGTACCCCCCCGTCGACCCCGACCCTGCCGCCG
CCGCCGCCGCCGCTGCCGCTTCTGCCGCCGCTGCCGCGACTGCTACTCTC
CGGCGGGCCGGGTCCGACGCGACGGACGCAACTACAACGTTCGTTCCCCG
GGCGCTGGCGGCGAGCAGCAAGAGCAACGCCAGAGCAGCCCCTTGCTGCG
CCGAGAGACGAATCTTGGTGTTCCTGTATGATGACGACGCGAGGAGGCGG
CGCGAAGAGCGACGCCCCGCGGGGGTGGTCGCGTGGCGGAACGTTTTGGC
TGCTGCTCTCGACAACGATACTCCTCCCCCTCCTCCTCCTTCTCCTCCTC
CTACCCGCGCCCCCCGCCGCTTCGGTGCTGGTGCCGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTCCGCCGGCGGTTGTTGTCGAAACTCTCGCCCGAAA
AGCCCGCCGTGCTGTGTCGTCGACGACCCTTCTCCTTGCGGTACCGTACC
CCCCCGTCGACCCCGACCCTGCCGCCGCCGCCGCCGCCGCTGCCGCTTCT
GCCGCCGCTGCCGCGACTGCTACTCTCCGGCGGGCCGGGTCCGACGCGAC
GGACGCAACTACAACGTTCGTTCCCCGGGCGCTGGCGGCGAGCAGCAAGA
GCAACGCCAGAGCAGCCCCTTGCTGCGCCGAGAGACGAATCTTGGTGTTC
CTGT
back to top