mRNA_E-fasciculatus_F_contig11753.1384.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11753.1384.1
Unique NamemRNA_E-fasciculatus_F_contig11753.1384.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11753.1384.1 vs. uniprot
Match: A0A6H5J8I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8I4_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 6.460e-119
Identity = 182/196 (92.86%), Postives = 192/196 (97.96%), Query Frame = 1 
Query:   10 ARSTTTGRVRGALHATNVENEVADALSDEAKITIASAMNGLPDDVLAYVMAYTPIGDTARQKNAFTAGAYVVDSVQVVALDGEGMDVAASVQTKSFFGKVQKSKETVRVSFGMDHPLETSEGVKRRLMEMSREQGLTKSTATIYKIPVGSYGGLPVNMLLNNVPHSRMARNFIYRGAAEALVQAVEDPTVPRRMKV 597
            ARSTTTG VRGALHATNV+NEVADALSDEAKITIASA+NGLP+DVLAYVMAYTPIGDTARQKNAFTAGAYVVDSV+VVA+DGEGMDVAASVQTKSFFGKVQ+SK+TVRV FG+D PLETSE VKRRLMEMSREQGLTKSTATIYKIPVGSYGGLPVNMLLNNVPHS+MARNFIYRGAAEALVQAVEDPTVPRRMK+
Sbjct:   71 ARSTTTGSVRGALHATNVQNEVADALSDEAKITIASAINGLPEDVLAYVMAYTPIGDTARQKNAFTAGAYVVDSVEVVAVDGEGMDVAASVQTKSFFGKVQESKQTVRVPFGVDRPLETSEAVKRRLMEMSREQGLTKSTATIYKIPVGSYGGLPVNMLLNNVPHSKMARNFIYRGAAEALVQAVEDPTVPRRMKL 266
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BLAST of mRNA_E-fasciculatus_F_contig11753.1384.1 vs. uniprot
Match: D8LQF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQF1_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 8.870e-119
Identity = 182/196 (92.86%), Postives = 191/196 (97.45%), Query Frame = 1 
Query:   10 ARSTTTGRVRGALHATNVENEVADALSDEAKITIASAMNGLPDDVLAYVMAYTPIGDTARQKNAFTAGAYVVDSVQVVALDGEGMDVAASVQTKSFFGKVQKSKETVRVSFGMDHPLETSEGVKRRLMEMSREQGLTKSTATIYKIPVGSYGGLPVNMLLNNVPHSRMARNFIYRGAAEALVQAVEDPTVPRRMKV 597
            ARSTTTG  RGALHATNV+NEVADALSDEAKITIASAMNGLP+DVLAYVMAYTPIGDTARQKNAFTAGAY+VDSV+VVALDGEGMDVAASVQTKSFFGKVQ+SK+TVRVSFG+D PLETSE VKRRLMEMSREQGLTKSTATIYKIPVGSYGGLPVNMLLNNVPHS+MARNFIYRGAAEALV AVEDPTVPRRMK+
Sbjct:   18 ARSTTTGSARGALHATNVQNEVADALSDEAKITIASAMNGLPEDVLAYVMAYTPIGDTARQKNAFTAGAYMVDSVEVVALDGEGMDVAASVQTKSFFGKVQESKQTVRVSFGVDRPLETSEAVKRRLMEMSREQGLTKSTATIYKIPVGSYGGLPVNMLLNNVPHSKMARNFIYRGAAEALVLAVEDPTVPRRMKL 213
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BLAST of mRNA_E-fasciculatus_F_contig11753.1384.1 vs. uniprot
Match: A0A835YYF4_9STRA (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYF4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.250e-11
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:  415 LTKSTATIYK------------------IPVGSYGGLPVNMLLNNVPHSRMARNFIYRGAAEALVQAVEDPTVPRRMKVR-TPPKNNI 621
            L+ +TATIY                   +PVGSY GLP N+ LNNVPHSR+AR FIY GA  AL +A++D +  RRM VR T P+ N 
Sbjct: 1841 LSAATATIYNTHPAYIPGLXXXXXXXXXMPVGSYSGLPKNLRLNNVPHSRLARAFIYHGACAALFKAIDDDSFSRRMTVRCTVPELNF 1928
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11753.1384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J8I4_9PHAE6.460e-11992.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQF1_ECTSI8.870e-11992.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YYF4_9STRA6.250e-1147.73G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11753contigE-fasciculatus_F_contig11753:131..4068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.7
Seed ortholog evalue7.5e-96
Seed eggNOG ortholog2880.D8LQF1
KEGG rclassRC00002
KEGG koko:K18533
KEGG ReactionR00124,R00127,R00156,R00330,R00570,R00722,R01137,R01547,R01857,R02093,R02326,R02331,R03530
KEGG Pathwayko00230,ko00240,ko01100,ko01110,ko01130,map00230,map00240,map01100,map01110,map01130
KEGG ModuleM00049,M00052,M00053
EggNOG free text desc.adenylate kinase activity
EggNOG OGsCOG0563@1,KOG3078@2759
Ec32 ortholog descriptionDomain of unknown function DUF1995
Ec32 orthologEc-10_005390.1
EC2.7.4.3,2.7.4.6
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size627
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11753.1384.1prot_E-fasciculatus_F_contig11753.1384.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11753 131..4068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927688.6351793-CDS-E-fasciculatus_F_contig11753:130..3131622927688.6351793-CDS-E-fasciculatus_F_contig11753:130..313Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11753 131..313 -
1695995650.0083916-CDS-E-fasciculatus_F_contig11753:130..3131695995650.0083916-CDS-E-fasciculatus_F_contig11753:130..313Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11753 131..313 -
1622927688.6473403-CDS-E-fasciculatus_F_contig11753:2812..29501622927688.6473403-CDS-E-fasciculatus_F_contig11753:2812..2950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11753 2813..2950 -
1695995650.0293844-CDS-E-fasciculatus_F_contig11753:2812..29501695995650.0293844-CDS-E-fasciculatus_F_contig11753:2812..2950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11753 2813..2950 -
1622927688.7246592-CDS-E-fasciculatus_F_contig11753:3395..35301622927688.7246592-CDS-E-fasciculatus_F_contig11753:3395..3530Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11753 3396..3530 -
1695995650.0458112-CDS-E-fasciculatus_F_contig11753:3395..35301695995650.0458112-CDS-E-fasciculatus_F_contig11753:3395..3530Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11753 3396..3530 -
1622927688.7361093-CDS-E-fasciculatus_F_contig11753:3897..40681622927688.7361093-CDS-E-fasciculatus_F_contig11753:3897..4068Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11753 3898..4068 -
1695995650.056768-CDS-E-fasciculatus_F_contig11753:3897..40681695995650.056768-CDS-E-fasciculatus_F_contig11753:3897..4068Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11753 3898..4068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11753.1384.1

>prot_E-fasciculatus_F_contig11753.1384.1 ID=prot_E-fasciculatus_F_contig11753.1384.1|Name=mRNA_E-fasciculatus_F_contig11753.1384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=209bp
MGRARSTTTGRVRGALHATNVENEVADALSDEAKITIASAMNGLPDDVLA
YVMAYTPIGDTARQKNAFTAGAYVVDSVQVVALDGEGMDVAASVQTKSFF
GKVQKSKETVRVSFGMDHPLETSEGVKRRLMEMSREQGLTKSTATIYKIP
VGSYGGLPVNMLLNNVPHSRMARNFIYRGAAEALVQAVEDPTVPRRMKVR
TPPKNNIP*
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mRNA from alignment at E-fasciculatus_F_contig11753:131..4068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11753.1384.1 ID=mRNA_E-fasciculatus_F_contig11753.1384.1|Name=mRNA_E-fasciculatus_F_contig11753.1384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3938bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11753:131..4068- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCAGGGCGCGATCAACGACAACAGGAAGGGTACGCGGGGCTCTACA
CGCAACCAACGTGGAGAACGAGGTGGCCGACGCTCTTAGCGACGAAGCTA
AGATCACCATCGCCTCCGCCATGAACGGGCTGCCGGACGACGTCCTCGCC
TACGTCATGGCTTACACGCCGGTGATTTATTGGCGTACTGTCTTGTTTGT
TCGCGTCGCCGTCTGCAGTGTTCTTGATCCGTTCGTGTAACCTTGCCGTG
TGCGTTGCGGTGTTGTTCTTGGCCAATGCTTTTCGCTGCCAAGCGCCAAG
GTCGATGGCTCACGCTGAGCAATCTGCGGACTAGGGCTAGTCGTCAACGT
CGTCGTCATCGTGAGGCAATGTTTTGCTTGTTGTGGTACAAGTATCTTGT
GTTGACGGGATCGTCCGATCTTTGCTACGTGCTATTGCGCTTCACCACAT
GCCCCCGGCGTCAACGGTGAACAACCCCAGGCTTCCCCTCGCCTTTGGGG
GAATTTCGTGACTTTCCGTGCTTTTTTGCCTTTCTCAGATAGGTGACACA
GCAAGACAGAAGAACGCGTTCACGGCGGGAGCGTACGTGGTGGATTCGGT
GCAGGTAGTGGCGTTGGATGGGGAGGGGATGGATGTGGCGGCCTCCGTGC
AGACCAAGTCGTTCTTCGGCAAGGTGGGTTTCTCAGCCTCTTGCTGTCGC
TGCCGTTGCTGCGAGTGTTGCGTTAAAAACGTGGCATCGTTCATTTTACA
ACAAAGTTTCCGCCGGTCCCATTGGTCAAGACTGCTGCTACCCCGAAACT
CGCAAGTCCACGTTGCGTTCGGAGACAGAACAGCCAGGGTGCAGATGTGC
GTGCTGGCCTCCCTGTCCATGGGAGGAATGCCCCTTCCCCTCCATATCTC
TTCTCGCCGAAGCCATAGCGTGGAACCGATCACAGGACGCGAAGGCACCT
CCCGATATTTGGCCATACCCCCATTTCCCGAGAGACTTGCCACGCATTCA
CGCTGAACAGCCCCTTCGTGACCAAGAAAGTTCTGTACACGTTCTCTCGG
ACGGACGTATGCATACAGCCTCACTGCGACCAACAGAGCGCCTCCCACCT
CATGCGTCCCCACTTCAGGTGCAAAAATCGAAAGAAACGGTGCGGGTGTC
GTTCGGGATGGATCACCCGCTGGAAACATCGGAGGGCGTGAAGCGGAGGC
TGATGGAGATGAGCAGGGAGCAGGGGTTGACGAAGAGCACGGCGACAATC
TACAAGGTGCTATTTGTTTTCCATGAAATACGCGAGTCATAAGTGCATGA
AAAAACGGTTTTCGAGTGCTTGCAGCGCGGCTGAGGCGGATTAAACAGGT
GATGCGTTGTCGCTTGCTGGCCGTAATTTTCGTCCCTTGCCGTATCTATT
TGCAGTTTTCCGAACATGCCTTTCGTCGGTTTTCCTTTGGGGCTTTCTGC
CCCTGTCTCTGTCCCTTCTCTCTTCTTTTTGAAGTCCTGTGTCTGCATTT
CACGCCGTTTGATTTTATTGGATCAAAGTTCACTTTTGTTTTTGCTGGAT
GCTGGTTGCGAGCGAACCGTGTGGCAGCACAACACAACCATTGGTATTGT
AGATTTCCATCCTCACTTTGAAAGGAAAACAAGCTCTGTTTAGTATGGTA
GATCCTCGATTTGAAACTGCTTTAGAAGCCATATTTACCAACCTGAGCGC
AATATCAATATATCTTGGGCCCTGCGCCGAGATTATCCTTGCACGTCAGG
GAGAGCTGTGCGGACGTTGCTCCATTTTTGGGCCAGCATCAACATGAGAT
ATGACACTAAACTTATGAGTTCTCGGTCTTGGAGTGGTCGGCTATACCTC
CCTCTCTGCTGCTCTTCCAGCACATTTACACCTGCCTTCAAATAGGGCAG
CAAGCCTCATACCAACATCATGGGACTTGCTACAGAACTTTCCCCGCATT
ATTTGCGGTGGTGCTCGATCAATCCTGCAAGATGCATGATCGTGTATGGT
GCGAAGCGAGCCGTGTGCACGCACTCGCGGCATCTTCTCACTTCATAAAA
TATTGCAAAGATAAGATAGCGACAACCGCCGAGGGGAGAAAATTTCAAAA
ATTCAGAATACATCAAGTCGATTGCTGGGTCACGGACCACGTTCGGGATG
AAAACGACTACGCCTGCGTCGGAGGCAGACACGGGTGCGCCGGGACAAAC
AAGACTCGTTTTAAGCTTAAGAGTCTCACGGTGGTGTTCGTTAAAGTTTG
GCAGGACGGTTTTGAGTGTCTTATCTTTTAGGGGTCAAGATACGGTAAAA
GGTGCCTCCTCTATTGCTGTGCGGCCGTGTGCGCTGTGGTACGAAGCCCT
CTTGGACATGAATCTGCAGTGTTGTTTCTGCGAACATGAACCTGCAGCTT
AGCAGCTGACTGAGTTGCGTTGTTTGTTGACAGCCTGCCTAACTCAGACA
TCCCTGCTATCGCTATCGCTGCCTATTCTATTCTCGGAAGAAGATAAGAA
CACCATCATGAAGTCAAAAGTATCTATGCACTTCTTGAACGCTCGAACCG
CTACCACTGAGGCACTGAGGAAGGAAAATGTCCGCCAGTAACTATCTTGC
TGCTTAAGTCAGGCCTTGCTCTGAGCATCAGCAGTGACACCTTCGAACAC
ATGTCTTTCGGGCGAGGACGCCTTGCATGCAAGACCTTTAACGAGACCCG
AATATGTGTTTCCGAACAGCGAGAGCATTGCCAAAGTATTCGGCGCGGGG
GGGCGTAGATAGGGATGGGTGCTTGTTTGTGTTCGTAGCTGCTGTCAGGC
GAAAAAATGGCTGTGTGGGTACTATTTTGTGCCTCTGCTGTTCTTCCTTG
GTTTGATAAGTATATCGCAACGTGTTCATGCGATTTCGACGATTGCCGAA
GAAAAACATTTAATGTAGCCGCCTCCGAGGTGCCCAACAACTCAAGCATG
ACAACTGGGTACGAAGCACTTTTGCGCGACTGCAAAGTATTGTCCCCGAT
TGTGTATGTGTTCGATCTGCGCGCCCGGGGGGTGTAGTGTGCTCCTAGCC
GTGCATGCCGTAGTCGTTAGACCATAGACCTCGCATCCCTACAAAGCCGG
GGCAGAGCACGCCGGGTTCTCACCGGACCATGCTCTCACATCACCACGCG
CGAAGCACTGTGAGGTATTCGGCGAGTCGCGTGGGGGGTGCCCTGCATCC
TGCGAAGGGTGTTCGGCATCTTGTGCCTTCTTCCTTGCACACGGATGACA
ACACAAATGCGGATGACTTGATACGTTTTCCGGTGCCTTGATTTCCGGAG
ACAGTTGTAAGCGCTGTACTGTATTACTGCCTCGAGGGCGATTGACATAT
TTGTCACGACGTGGTGCGAAAGTCCCCTTTGCGCGGCGTGAGGGTTCTCG
ACCCCGCACAACATGATCTACTCGACCACCACTATGGTTACCGCAAAAAA
AAACAAAAGGAAAAAATCGGTAACCTGGTTGTCGAGCTCAGGAAGCGACC
GGCGTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCAAACCCCGAAAG
CTCTTGAAGGTGGGGGGGGTATTTCAGCCATCCCGGTTAAGTACCTCTTT
TAGCTTTTCCTCTTGCTGTTCACTCTCTAACACCCTTAGTCCATCTCTCA
TCCTGCATGTCGCACGCTCTCACCCCCCCCTTACCCACTCCCCTCTCTCT
TTCTCTCTGCCCCGCTCTGTCGCTCGCTGTCGCTCTCCCCCGCCCAACGC
AACAGATCCCTGTAGGCAGCTACGGCGGACTGCCTGTCAACATGCTGCTC
AACAACGTTCCCCACTCGAGGATGGCGAGGAACTTCATCTACCGGGGGGC
GGCAGAGGCCCTCGTGCAGGCGGTGGAAGACCCCACCGTGCCACGGCGGA
TGAAAGTGCGAACCCCCCCCAAAAACAACATTCCGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11753:131..4068-

>mRNA_E-fasciculatus_F_contig11753.1384.1 ID=mRNA_E-fasciculatus_F_contig11753.1384.1|Name=mRNA_E-fasciculatus_F_contig11753.1384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1254bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11753:131..4068- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCAGGGCGCGATCAACGACAACAGGAAGGGTACGCGGGGCTCTACA
CGCAACCAACGTGGAGAACGAGGTGGCCGACGCTCTTAGCGACGAAGCTA
AGATCACCATCGCCTCCGCCATGAACGGGCTGCCGGACGACGTCCTCGCC
TACGTCATGGCTTACACGCCGATGGGCAGGGCGCGATCAACGACAACAGG
AAGGGTACGCGGGGCTCTACACGCAACCAACGTGGAGAACGAGGTGGCCG
ACGCTCTTAGCGACGAAGCTAAGATCACCATCGCCTCCGCCATGAACGGG
CTGCCGGACGACGTCCTCGCCTACGTCATGGCTTACACGCCGATAGGTGA
CACAGCAAGACAGAAGAACGCGTTCACGGCGGGAGCGTACGTGGTGGATT
CGGTGCAGGTAGTGGCGTTGGATGGGGAGGGGATGGATGTGGCGGCCTCC
GTGCAGACCAAGTCGTTCTTCGGCAAGATAGGTGACACAGCAAGACAGAA
GAACGCGTTCACGGCGGGAGCGTACGTGGTGGATTCGGTGCAGGTAGTGG
CGTTGGATGGGGAGGGGATGGATGTGGCGGCCTCCGTGCAGACCAAGTCG
TTCTTCGGCAAGGTGCAAAAATCGAAAGAAACGGTGCGGGTGTCGTTCGG
GATGGATCACCCGCTGGAAACATCGGAGGGCGTGAAGCGGAGGCTGATGG
AGATGAGCAGGGAGCAGGGGTTGACGAAGAGCACGGCGACAATCTACAAG
GTGCAAAAATCGAAAGAAACGGTGCGGGTGTCGTTCGGGATGGATCACCC
GCTGGAAACATCGGAGGGCGTGAAGCGGAGGCTGATGGAGATGAGCAGGG
AGCAGGGGTTGACGAAGAGCACGGCGACAATCTACAAGATCCCTGTAGGC
AGCTACGGCGGACTGCCTGTCAACATGCTGCTCAACAACGTTCCCCACTC
GAGGATGGCGAGGAACTTCATCTACCGGGGGGCGGCAGAGGCCCTCGTGC
AGGCGGTGGAAGACCCCACCGTGCCACGGCGGATGAAAGTGCGAACCCCC
CCCAAAAACAACATTCCGTAAATCCCTGTAGGCAGCTACGGCGGACTGCC
TGTCAACATGCTGCTCAACAACGTTCCCCACTCGAGGATGGCGAGGAACT
TCATCTACCGGGGGGCGGCAGAGGCCCTCGTGCAGGCGGTGGAAGACCCC
ACCGTGCCACGGCGGATGAAAGTGCGAACCCCCCCCAAAAACAACATTCC
GTAA
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