mRNA_E-fasciculatus_F_contig11738.1374.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11738.1374.1
Unique NamemRNA_E-fasciculatus_F_contig11738.1374.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11738.1374.1 vs. uniprot
Match: D8LHD8_ECTSI (Eukaryotic translation initiation factor 2B beta subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHD8_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 4.030e-45
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    4 QLCPLFPHDQDTFNCLLSPAAVMSYKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCPLFPHDQDTFNCLLSPAAVMS+KDKDSM+NVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD
Sbjct:  388 KLCPLFPHDQDTFNCLLSPAAVMSFKDKDSMRNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 463
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BLAST of mRNA_E-fasciculatus_F_contig11738.1374.1 vs. uniprot
Match: A0A836CBW3_9STRA (Eukaryotic translation initiation factor 2B beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.910e-36
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    4 QLCPLFPHDQDTFNCLLSPAAVMSYKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCPLFPHDQDTFNCLL+P+AV+ Y+D +  +++EVLNPAYDYIPP LVDLY+TN+GG QPSYIYRLLAEYYHRDD
Sbjct:  313 KLCPLFPHDQDTFNCLLAPSAVLPYEDTELAESIEVLNPAYDYIPPELVDLYMTNIGGHQPSYIYRLLAEYYHRDD 388
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BLAST of mRNA_E-fasciculatus_F_contig11738.1374.1 vs. uniprot
Match: A0A7S3XZZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZZ5_HETAK)

HSP 1 Score: 121 bits (304), Expect = 1.290e-32
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    4 QLCPLFPHDQDTFNCLLSPAAVMSYKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCPL+PH+ D FN LLSP AV+ Y++  ++ +VEVLNPAYDYIPP L+DLYITNMGG QPSYIYRLLAEYYH +D
Sbjct:  160 KLCPLYPHNLDYFNTLLSPGAVLDYEEMATLDDVEVLNPAYDYIPPELIDLYITNMGGHQPSYIYRLLAEYYHHED 235
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BLAST of mRNA_E-fasciculatus_F_contig11738.1374.1 vs. uniprot
Match: A0A7S2DRQ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRQ5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.600e-26
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    4 QLCPLFPHDQDTFNCLLSPAAVMSYKDKDSM----KNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCPL+PHD + FN L SPA+V+SY D  +     ++ EVLNPAYD++PP L+ LY+TN GG QPSYIYRLLAE+YH  D
Sbjct:   53 KLCPLYPHDLNAFNELRSPASVLSYFDTTNRTRLREDAEVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYHPSD 132
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BLAST of mRNA_E-fasciculatus_F_contig11738.1374.1 vs. uniprot
Match: A0A7S2XMS8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMS8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.480e-26
Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    4 QLCPLFPHD-QDTFNCLLSPAAVMSYKDK--DSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCP++PH+ QDT N L+SP++V+ Y +   D M  VE +NP +DYIPP L++LY+TN+GG QPSY+YRLLAEYYH DD
Sbjct:  172 KLCPMYPHEGQDTLNDLVSPSSVVDYSEMSDDLMSKVEFVNPIHDYIPPQLINLYVTNIGGFQPSYLYRLLAEYYHSDD 250
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BLAST of mRNA_E-fasciculatus_F_contig11738.1374.1 vs. uniprot
Match: A0A7S2LE62_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LE62_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.880e-25
Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    4 QLCPLFPHD-QDTFNCLLSPAAVMSYKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCP+FPH+ QDT N L+SP++V++ +D +  +NVE +NP +DYIPP LV+LYITN+G  QPSYIYRLLAEYYH DD
Sbjct:  377 KLCPVFPHEGQDTLNDLISPSSVVNIEDSE-YENVEFVNPVHDYIPPQLVELYITNVGCFQPSYIYRLLAEYYHMDD 452
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BLAST of mRNA_E-fasciculatus_F_contig11738.1374.1 vs. uniprot
Match: A0A7S2GLW7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLW7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.700e-24
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    4 QLCPLFPHDQDTFNCLLSPAAVMSYKDKDSM----KNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCPL+PHD + FN L SPA+V+SY D  +     ++ EVLNPAYD++PP L+ LY+TN GG QPSYIYRLLAE+YH  D
Sbjct:  285 KLCPLYPHDLNAFNELRSPASVLSYFDTTNRTRLREDAEVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYHPSD 364
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BLAST of mRNA_E-fasciculatus_F_contig11738.1374.1 vs. uniprot
Match: W7TWQ5_9STRA (Translation initiation factor eif-2b subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWQ5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.740e-24
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    4 QLCPLFPHDQDTFNCLLSPAAVMSYKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +L P++ HDQD FN L SP+A++ Y D   +   + LNPAYDY+PP LVDLYITN GG Q  Y+YRLL EYYH DD
Sbjct:  283 KLSPVYRHDQDAFNDLRSPSALIEYADTQLLPEADFLNPAYDYVPPELVDLYITNTGGHQTFYLYRLLGEYYHHDD 358
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BLAST of mRNA_E-fasciculatus_F_contig11738.1374.1 vs. uniprot
Match: A0A8K1FND4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FND4_PYTOL)

HSP 1 Score: 101 bits (251), Expect = 8.030e-24
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:    1 LQLCPLFPHDQDTFNCLLSPAAVMSYKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            ++LCPL+ HD D  N L++P+ + +Y+  D+++N+EVLNPAYDY+PP LV LYITN G  QPSYIYRLLAEYY   D
Sbjct:  287 IKLCPLYAHDLDVLNELVAPSTIYNYE--DTVENLEVLNPAYDYVPPELVSLYITNTGAHQPSYIYRLLAEYYSPQD 361
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BLAST of mRNA_E-fasciculatus_F_contig11738.1374.1 vs. uniprot
Match: B8C5F6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5F6_THAPS)

HSP 1 Score: 102 bits (253), Expect = 1.100e-23
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    4 QLCPLFPHD-QDTFNCLLSPAAVM--SYKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCP++PH+ QDT N L+SP++V+  S      +  VE +NP +DYIPP L+DLY+TN+GG QPSYIYRLLAEYYH DD
Sbjct:  398 KLCPMYPHEGQDTLNDLISPSSVVDGSLMSDPVLSEVEFVNPVHDYIPPQLIDLYVTNIGGFQPSYIYRLLAEYYHSDD 476
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11738.1374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHD8_ECTSI4.030e-4596.05Eukaryotic translation initiation factor 2B beta s... [more]
A0A836CBW3_9STRA1.910e-3677.63Eukaryotic translation initiation factor 2B beta s... [more]
A0A7S3XZZ5_HETAK1.290e-3271.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DRQ5_9STRA1.600e-2660.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2XMS8_9STRA4.480e-2659.49Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2LE62_9STRA9.880e-2563.64Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2GLW7_9STRA1.700e-2460.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TWQ5_9STRA7.740e-2459.21Translation initiation factor eif-2b subunit beta ... [more]
A0A8K1FND4_PYTOL8.030e-2459.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
B8C5F6_THAPS1.100e-2359.49Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11738contigE-fasciculatus_F_contig11738:3535..4173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue2.2e-37
Seed eggNOG ortholog2880.D8LHD8
Preferred nameEIF2B2
KEGG koko:K03372,ko:K03754,ko:K19041
KEGG TC2.A.1.25
KEGG Pathwayko00604,ko01100,ko03013,map00604,map01100,map03013
GOsGO:0000003,GO:0000166,GO:0001541,GO:0001558,GO:0001666,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0008361,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009987,GO:0010001,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0014003,GO:0016043,GO:0017076,GO:0019001,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0023052,GO:0030154,GO:0030234,GO:0030307,GO:0030424,GO:0030516,GO:0030554,GO:0030900,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0032045,GO:0032268,GO:0032501,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032991,GO:0033554,GO:0034248,GO:0034284,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036293,GO:0036294,GO:0040008,GO:0042063,GO:0042221,GO:0042552,GO:0042995,GO:0043005,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048638,GO:0048639,GO:0048699,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051239,GO:0051240,GO:0051246,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060322,GO:0061387,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0097159,GO:0097367,GO:0097458,GO:0098772,GO:0120025,GO:0120035,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000026,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1184@1,KOG1465@2759
EC2.3.2.27
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03012,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927684.9033904-CDS-E-fasciculatus_F_contig11738:3534..36571622927684.9033904-CDS-E-fasciculatus_F_contig11738:3534..3657Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11738 3535..3657 -
1695995649.3277843-CDS-E-fasciculatus_F_contig11738:3534..36571695995649.3277843-CDS-E-fasciculatus_F_contig11738:3534..3657Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11738 3535..3657 -
1622927684.9192483-CDS-E-fasciculatus_F_contig11738:4065..41731622927684.9192483-CDS-E-fasciculatus_F_contig11738:4065..4173Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11738 4066..4173 -
1695995649.340219-CDS-E-fasciculatus_F_contig11738:4065..41731695995649.340219-CDS-E-fasciculatus_F_contig11738:4065..4173Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11738 4066..4173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11738.1374.1prot_E-fasciculatus_F_contig11738.1374.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11738 3535..4173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11738.1374.1

>prot_E-fasciculatus_F_contig11738.1374.1 ID=prot_E-fasciculatus_F_contig11738.1374.1|Name=mRNA_E-fasciculatus_F_contig11738.1374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=77bp
LQLCPLFPHDQDTFNCLLSPAAVMSYKDKDSMKNVEVLNPAYDYIPPNLV
DLYITNMGGLQPSYIYRLLAEYYHRDD
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mRNA from alignment at E-fasciculatus_F_contig11738:3535..4173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11738.1374.1 ID=mRNA_E-fasciculatus_F_contig11738.1374.1|Name=mRNA_E-fasciculatus_F_contig11738.1374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=639bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11738:3535..4173- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCAGCTGTGCCCGCTGTTTCCTCACGATCAGGACACGTTCAACTGCCT
TCTTTCGCCCGCGGCTGTCATGTCCTACAAGGACAAGGACAGCATGAAGA
ACGTCGAGGTGAGCAAGAAACGCGTCACCCCTTCTGGCGCCAAGATATTG
CCAGCGGCTGGCTTGTGTACATTAGTAGCGCAACGGTTGTAGCAGGGGGG
AGCGGAGTGGTGCTATTGTAGGCGATAAATTGATCCAAGATGTATGGAAG
GGGATAGAGTGACGCAAAACGGTTTTTAGCTGAGGAGAGAGCGACAGATA
ATCAGAATCTCTGAACTACTATGTAGTCTCACCGGTTGTTTTTTGTTCTT
GCAGTATGGGATTGGGCTGTTTGAGATTGGTCTGTTTCCTTCCACAGAGG
GATTCCACAAAACTTGGATGAGTGCGGATGTTGAACGGGGGACTGGAGCG
GTGTCAGTGTGAACACGACCTAGTAATAACGATAGAACGTCTGCCCTGTG
CCGCGTGGCCCGGCAGGTTTTGAACCCCGCGTACGACTACATCCCGCCCA
ACCTCGTCGATCTCTACATCACCAACATGGGGGGCCTGCAACCGTCGTAC
ATCTACCGGCTGTTGGCGGAGTACTACCACAGGGATGAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11738:3535..4173-

>mRNA_E-fasciculatus_F_contig11738.1374.1 ID=mRNA_E-fasciculatus_F_contig11738.1374.1|Name=mRNA_E-fasciculatus_F_contig11738.1374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11738:3535..4173- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCAGCTGTGCCCGCTGTTTCCTCACGATCAGGACACGTTCAACTGCCT
TCTTTCGCCCGCGGCTGTCATGTCCTACAAGGACAAGGACAGCATGAAGA
ACGTCGAGCTGCAGCTGTGCCCGCTGTTTCCTCACGATCAGGACACGTTC
AACTGCCTTCTTTCGCCCGCGGCTGTCATGTCCTACAAGGACAAGGACAG
CATGAAGAACGTCGAGGTTTTGAACCCCGCGTACGACTACATCCCGCCCA
ACCTCGTCGATCTCTACATCACCAACATGGGGGGCCTGCAACCGTCGTAC
ATCTACCGGCTGTTGGCGGAGTACTACCACAGGGATGATGTTTTGAACCC
CGCGTACGACTACATCCCGCCCAACCTCGTCGATCTCTACATCACCAACA
TGGGGGGCCTGCAACCGTCGTACATCTACCGGCTGTTGGCGGAGTACTAC
CACAGGGATGAT
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