mRNA_E-fasciculatus_F_contig11708.1355.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11708.1355.1
Unique NamemRNA_E-fasciculatus_F_contig11708.1355.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11708.1355.1 vs. uniprot
Match: D7FZJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ9_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 2.560e-54
Identity = 190/288 (65.97%), Postives = 199/288 (69.10%), Query Frame = 1 
Query:   13 ATATVHTKRTSAGRTFPRRDGGEQEGRAERLEDGASSAPSSGDEKEG---GPCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRN-------SLGGNESQTLGSRQTAAVTSADSVPSSTRPSKPRSNSLPSEGE-MVAASTAGTVGGNDREHKRQRQESHPSRSSLPSRRSSAXXXXXXXXXXXXXXXXGLETMAAGSIDPAEVREGRQIHNQRGDDDTVLEREVKRAKKSMETEHAVLLADRDSTISQLSG 843
            ATA V T+RTSAGR+FPR DGGEQEGRAE  +D A SAPSS DEKEG    P  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    H+        S   NE + L S QTAAVTSADS PSS  P K RSNSLPSE +  VAASTAGTVGGND + KRQ QES P RS LP+  SSA                GLETMAAGS +PAE  EGRQIH QRGDD TVL REVKRAKK ME EHAVLLADRDSTISQLSG
Sbjct:   29 ATAAVRTERTSAGRSFPR-DGGEQEGRAETSDDRAFSAPSSSDEKEGXAVSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGPVAKNPLRESLRREKHHQRQQHQDYKSSRENEFKVLDSPQTAAVTSADSAPSSKGPRKSRSNSLPSEADDAVAASTAGTVGGNDGKRKRQCQESQPPRSPLPAPLSSARVGGGGDERRGYRA--GLETMAAGSTEPAEAGEGRQIHYQRGDDATVLGREVKRAKKRMEAEHAVLLADRDSTISQLSG 313
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BLAST of mRNA_E-fasciculatus_F_contig11708.1355.1 vs. uniprot
Match: A0A6H5JNY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY4_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 4.970e-47
Identity = 147/289 (50.87%), Postives = 158/289 (54.67%), Query Frame = 1 
Query:   10 GATATVHTKRTSAGRTFPRRDGGEQEGRAERLEDGASSAPSSGDEKEGG---------PCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRNSLGGNESQTLGSRQTAAVTSADSVPSSTRPSKPRSNSLPSEGEMVAASTAGTVGGNDREHKRQRQESHPSRSSLPSRRSSAXXXXXXXXXXXXXXXX--GLETMAAGSIDPAEVREGRQIHNQRGDDDTVLEREVKRAKKSMETEHAVLLADRDSTISQLSG 843
            GATATV T+RTSAGRTFPR  GGEQEGRAE  +DGA  A  S DEK+GG         P V                           XXX                                   NS   NE + L S QTAAVTSA+S PSS  P K RSNSLPSE + VAASTAGTV GND +HKR+R+   PS           XXXXXXXXXXX       GLETMA  S +P E  EGRQIH QR DD TVL REVKRAKKSME EH+VLLADRDSTI QLSG
Sbjct:   57 GATATVRTERTSAGRTFPR-GGGEQEGRAETSDDGAFPASPSSDEKKGGAVSPRSITAPPVVTAFFPAVRPRRQCSSLRSDAVAAADEXXXSTAAAGAGAPPVTKNPLRERPRWEKHHQRQQHPDYNSSRENEFKALDSAQTAAVTSANSAPSSIGPGKSRSNSLPSEADAVAASTAGTVAGNDGKHKRRRESQLPSSXXXXXXXXXXXXXXXXXXXXXERRGYRAGLETMAVESTEPTEAGEGRQIHYQRDDDTTVLGREVKRAKKSMEAEHSVLLADRDSTIRQLSG 344
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11708.1355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZJ9_ECTSI2.560e-5465.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNY4_9PHAE4.970e-4750.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11708contigE-fasciculatus_F_contig11708:2880..4133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010200.1
Exons2
Model size843
Cds size843
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927682.5416281-CDS-E-fasciculatus_F_contig11708:2879..36051622927682.5416281-CDS-E-fasciculatus_F_contig11708:2879..3605Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11708 2880..3605 +
1695995648.2732947-CDS-E-fasciculatus_F_contig11708:2879..36051695995648.2732947-CDS-E-fasciculatus_F_contig11708:2879..3605Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11708 2880..3605 +
1622927682.5858786-CDS-E-fasciculatus_F_contig11708:4016..41331622927682.5858786-CDS-E-fasciculatus_F_contig11708:4016..4133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11708 4017..4133 +
1695995648.283277-CDS-E-fasciculatus_F_contig11708:4016..41331695995648.283277-CDS-E-fasciculatus_F_contig11708:4016..4133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11708 4017..4133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11708.1355.1prot_E-fasciculatus_F_contig11708.1355.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11708 2880..4133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11708.1355.1

>prot_E-fasciculatus_F_contig11708.1355.1 ID=prot_E-fasciculatus_F_contig11708.1355.1|Name=mRNA_E-fasciculatus_F_contig11708.1355.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=281bp
MVPGATATVHTKRTSAGRTFPRRDGGEQEGRAERLEDGASSAPSSGDEKE
GGPCVTASSAAVQPRTQSSSSLRSDAAAADDDDDDDGGSAAAAAGAGPAA
KKPPRESTRQERHHQRQQHRNSLGGNESQTLGSRQTAAVTSADSVPSSTR
PSKPRSNSLPSEGEMVAASTAGTVGGNDREHKRQRQESHPSRSSLPSRRS
SARGGGDGGGDGRGGSRAGLETMAAGSIDPAEVREGRQIHNQRGDDDTVL
EREVKRAKKSMETEHAVLLADRDSTISQLSG
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mRNA from alignment at E-fasciculatus_F_contig11708:2880..4133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11708.1355.1 ID=mRNA_E-fasciculatus_F_contig11708.1355.1|Name=mRNA_E-fasciculatus_F_contig11708.1355.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1254bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11708:2880..4133+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCCGGGAGCCACGGCCACCGTACACACGAAGAGGACTTCTGCTGG
CCGGACGTTCCCCCGCCGCGACGGCGGGGAGCAAGAGGGACGGGCCGAGA
GATTGGAAGACGGAGCATCCTCGGCGCCCTCCAGCGGTGACGAGAAGGAG
GGGGGCCCTTGCGTGACGGCATCGTCGGCGGCCGTGCAGCCCAGGACGCA
GTCTTCTTCTTCTCTCCGATCCGATGCTGCTGCTGCTGATGATGATGACG
ATGACGATGGTGGTTCTGCTGCCGCCGCCGCTGGCGCAGGACCGGCGGCG
AAGAAGCCTCCTCGAGAGAGTACACGGCAGGAAAGACACCACCAACGGCA
GCAGCACCGAAACTCGCTCGGGGGGAATGAATCCCAGACCCTGGGCTCTC
GCCAGACCGCTGCCGTGACGAGCGCTGATTCCGTACCCTCTTCCACAAGG
CCGAGCAAGCCCCGCAGCAACTCCTTGCCATCAGAAGGTGAAATGGTGGC
GGCGTCCACAGCAGGGACAGTCGGCGGCAATGACCGCGAACACAAGCGCC
AGCGCCAGGAAAGCCACCCCTCCCGATCCTCCTTACCCTCACGGCGTTCT
TCAGCTCGTGGCGGCGGCGACGGAGGCGGCGATGGAAGAGGAGGCAGCAG
AGCTGGGCTAGAGACGATGGCTGCGGGCAGCATCGATCCAGCGGAAGTCA
GGGAGGGTCGTCAAATCCACAACCAGGTGTGCTTCCTGTCGCGTTCTTGT
TTTGCGCATGCGCATGGCACAGCTGTTTCTTGGGTCGTTGGCGGCTGTAC
ACCACCGCTTCTACTGTACGTCTTCTTCGAGAGGTTTTTCCTTGGTTCCG
CGAAGCTCCATCGCGTCGCACGTCGGATGTGTGTACGAGTTGTCGAAAAA
ATTTGGGAGGGTCGGCGATAGCGAGCAAGAGATCGCCAGGCGACGAAACG
ATCCCAGCCCTAGAGTCCAACTCACAACGACACGCTGGGCGGCAAGCAGA
TGATAGATACGATATACACATCACTACTGTCCGCACACGACAATTTTCAC
CCCCTCCTCGGAAGGCAACGACGCATCTCATTGTCTCCGCCGGCTGTCCC
ATTCCCCTACTGCCGCCGCCGATGATGCCCACTTCAGCGCGGCGATGATG
ACACTGTCCTGGAGCGGGAGGTGAAGCGGGCGAAGAAAAGTATGGAGACC
GAACACGCCGTCTTGCTGGCCGACCGGGACTCGACAATAAGCCAACTGTC
TGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11708:2880..4133+

>mRNA_E-fasciculatus_F_contig11708.1355.1 ID=mRNA_E-fasciculatus_F_contig11708.1355.1|Name=mRNA_E-fasciculatus_F_contig11708.1355.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1686bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11708:2880..4133+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCCGGGAGCCACGGCCACCGTACACACGAAGAGGACTTCTGCTGG
CCGGACGTTCCCCCGCCGCGACGGCGGGGAGCAAGAGGGACGGGCCGAGA
GATTGGAAGACGGAGCATCCTCGGCGCCCTCCAGCGGTGACGAGAAGGAG
GGGGGCCCTTGCGTGACGGCATCGTCGGCGGCCGTGCAGCCCAGGACGCA
GTCTTCTTCTTCTCTCCGATCCGATGCTGCTGCTGCTGATGATGATGACG
ATGACGATGGTGGTTCTGCTGCCGCCGCCGCTGGCGCAGGACCGGCGGCG
AAGAAGCCTCCTCGAGAGAGTACACGGCAGGAAAGACACCACCAACGGCA
GCAGCACCGAAACTCGCTCGGGGGGAATGAATCCCAGACCCTGGGCTCTC
GCCAGACCGCTGCCGTGACGAGCGCTGATTCCGTACCCTCTTCCACAAGG
CCGAGCAAGCCCCGCAGCAACTCCTTGCCATCAGAAGGTGAAATGGTGGC
GGCGTCCACAGCAGGGACAGTCGGCGGCAATGACCGCGAACACAAGCGCC
AGCGCCAGGAAAGCCACCCCTCCCGATCCTCCTTACCCTCACGGCGTTCT
TCAGCTCGTGGCGGCGGCGACGGAGGCGGCGATGGAAGAGGAGGCAGCAG
AGCTGGGCTAGAGACGATGGCTGCGGGCAGCATCGATCCAGCGGAAGTCA
GGGAGGGTCGTCAAATCCACAACCAGATGGTTCCGGGAGCCACGGCCACC
GTACACACGAAGAGGACTTCTGCTGGCCGGACGTTCCCCCGCCGCGACGG
CGGGGAGCAAGAGGGACGGGCCGAGAGATTGGAAGACGGAGCATCCTCGG
CGCCCTCCAGCGGTGACGAGAAGGAGGGGGGCCCTTGCGTGACGGCATCG
TCGGCGGCCGTGCAGCCCAGGACGCAGTCTTCTTCTTCTCTCCGATCCGA
TGCTGCTGCTGCTGATGATGATGACGATGACGATGGTGGTTCTGCTGCCG
CCGCCGCTGGCGCAGGACCGGCGGCGAAGAAGCCTCCTCGAGAGAGTACA
CGGCAGGAAAGACACCACCAACGGCAGCAGCACCGAAACTCGCTCGGGGG
GAATGAATCCCAGACCCTGGGCTCTCGCCAGACCGCTGCCGTGACGAGCG
CTGATTCCGTACCCTCTTCCACAAGGCCGAGCAAGCCCCGCAGCAACTCC
TTGCCATCAGAAGGTGAAATGGTGGCGGCGTCCACAGCAGGGACAGTCGG
CGGCAATGACCGCGAACACAAGCGCCAGCGCCAGGAAAGCCACCCCTCCC
GATCCTCCTTACCCTCACGGCGTTCTTCAGCTCGTGGCGGCGGCGACGGA
GGCGGCGATGGAAGAGGAGGCAGCAGAGCTGGGCTAGAGACGATGGCTGC
GGGCAGCATCGATCCAGCGGAAGTCAGGGAGGGTCGTCAAATCCACAACC
AGCGCGGCGATGATGACACTGTCCTGGAGCGGGAGGTGAAGCGGGCGAAG
AAAAGTATGGAGACCGAACACGCCGTCTTGCTGGCCGACCGGGACTCGAC
AATAAGCCAACTGTCTGGTCGCGGCGATGATGACACTGTCCTGGAGCGGG
AGGTGAAGCGGGCGAAGAAAAGTATGGAGACCGAACACGCCGTCTTGCTG
GCCGACCGGGACTCGACAATAAGCCAACTGTCTGGT
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