mRNA_E-fasciculatus_F_contig11706.1351.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11706.1351.1
Unique NamemRNA_E-fasciculatus_F_contig11706.1351.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11706.1351.1 vs. uniprot
Match: D7FTL9_ECTSI (Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL9_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 8.700e-38
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 3 
Query:   15 QVFFQDDSKGGVAGAAVAANAALVADAVRCMPLPASRMPEHAVPLGHERFCACGGEEGKGEEAAADQEPDFAVFL 239
            +VFFQDD+K GVAGAAVAANAALVADAVRCMPLPASRMPEHAVPLGHERFCACGG++GKGEEAAADQEPDF VFL
Sbjct: 1036 EVFFQDDTKDGVAGAAVAANAALVADAVRCMPLPASRMPEHAVPLGHERFCACGGDDGKGEEAAADQEPDFTVFL 1110
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11706.1351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTL9_ECTSI8.700e-3892.00Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11706contigE-fasciculatus_F_contig11706:2435..2674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_009050.1
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927681.7229326-CDS-E-fasciculatus_F_contig11706:2434..26741622927681.7229326-CDS-E-fasciculatus_F_contig11706:2434..2674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11706 2435..2674 -
1695995648.1909359-CDS-E-fasciculatus_F_contig11706:2434..26741695995648.1909359-CDS-E-fasciculatus_F_contig11706:2434..2674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11706 2435..2674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11706.1351.1prot_E-fasciculatus_F_contig11706.1351.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11706 2435..2674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11706.1351.1

>prot_E-fasciculatus_F_contig11706.1351.1 ID=prot_E-fasciculatus_F_contig11706.1351.1|Name=mRNA_E-fasciculatus_F_contig11706.1351.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=80bp
FFRFRRFSSRTTAREASRGQRWQPTPLSSRTPFGACRCRPRECRSTPFRL
GTRDSARAEGRRARGKRLPRTRSPTLPSS*
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mRNA from alignment at E-fasciculatus_F_contig11706:2435..2674-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11706.1351.1 ID=mRNA_E-fasciculatus_F_contig11706.1351.1|Name=mRNA_E-fasciculatus_F_contig11706.1351.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=240bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11706:2435..2674- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTTTCCGCTTTCGCAGGTTTTCTTCCAGGACGACAGCAAGGGAGGCGTC
GCGGGGGCAGCGGTGGCAGCCAACGCCGCTCTCGTCGCGGACGCCGTTCG
GTGCATGCCGCTGCCGGCCTCGAGAATGCCGGAGCACGCCGTTCCGCTTG
GGCACGAGAGATTCTGCGCGTGCGGAGGGGAGGAGGGCAAGGGGGAAGAG
GCTGCCGCGGACCAGGAGCCCGACTTTGCCGTCTTCCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11706:2435..2674-

>mRNA_E-fasciculatus_F_contig11706.1351.1 ID=mRNA_E-fasciculatus_F_contig11706.1351.1|Name=mRNA_E-fasciculatus_F_contig11706.1351.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11706:2435..2674- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTTTCCGCTTTCGCAGGTTTTCTTCCAGGACGACAGCAAGGGAGGCGTC
GCGGGGGCAGCGGTGGCAGCCAACGCCGCTCTCGTCGCGGACGCCGTTCG
GTGCATGCCGCTGCCGGCCTCGAGAATGCCGGAGCACGCCGTTCCGCTTG
GGCACGAGAGATTCTGCGCGTGCGGAGGGGAGGAGGGCAAGGGGGAAGAG
GCTGCCGCGGACCAGGAGCCCGACTTTGCCGTCTTCCTGATTTTTCCGCT
TTCGCAGGTTTTCTTCCAGGACGACAGCAAGGGAGGCGTCGCGGGGGCAG
CGGTGGCAGCCAACGCCGCTCTCGTCGCGGACGCCGTTCGGTGCATGCCG
CTGCCGGCCTCGAGAATGCCGGAGCACGCCGTTCCGCTTGGGCACGAGAG
ATTCTGCGCGTGCGGAGGGGAGGAGGGCAAGGGGGAAGAGGCTGCCGCGG
ACCAGGAGCCCGACTTTGCCGTCTTCCTGA
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