mRNA_E-fasciculatus_F_contig1170.1346.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1170.1346.1
Unique NamemRNA_E-fasciculatus_F_contig1170.1346.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1170.1346.1 vs. uniprot
Match: D7FKM0_ECTSI (HECT-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM0_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.190e-52
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    1 QWFWEAIESFNPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRETLREKLLYAISANAGFELT 273
            QWFWEAIESF+PEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQY DR+TLREKLLYAISANAGFELT
Sbjct: 1305 QWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYEDRQTLREKLLYAISANAGFELT 1395
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BLAST of mRNA_E-fasciculatus_F_contig1170.1346.1 vs. uniprot
Match: A0A7S2G4K7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4K7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 7.520e-37
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 QWFWEAIESFNPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEG--RLPSSATCMNLLKLPQYADRETLREKLLYAISANAGFELT 273
            QWFW+ +    P++QG FLKFVTS  R PLLGFE + PPIC+Q+VP G++G  RLPS+ATCMNLLKLP Y   + LREKLLYAISANAGFE++
Sbjct:   89 QWFWQVLRELTPQQQGDFLKFVTSSPRQPLLGFEYMQPPICIQKVPLGEDGPSRLPSAATCMNLLKLPDYPTCDILREKLLYAISANAGFEMS 181
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BLAST of mRNA_E-fasciculatus_F_contig1170.1346.1 vs. uniprot
Match: A0A835YYA3_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA3_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.450e-36
Identity = 65/91 (71.43%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    4 WFWEAIESFNPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEG-RLPSSATCMNLLKLPQYADRETLREKLLYAISANAGFELT 273
            WFW+ I +F P +Q  FLKFVTSCSR PLLGF+ L+PP+C+Q+V  G+ G +LPSSATCMNLLKLP+Y  RETLREKLLYAISA AGFELT
Sbjct:  356 WFWDIIANFTPAQQALFLKFVTSCSRQPLLGFKHLSPPMCIQQVESGERGNKLPSSATCMNLLKLPRYDSRETLREKLLYAISAGAGFELT 446
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BLAST of mRNA_E-fasciculatus_F_contig1170.1346.1 vs. uniprot
Match: A0A7R9Y9Y8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9Y8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.030e-36
Identity = 60/89 (67.42%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    7 FWEAIESFNPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRETLREKLLYAISANAGFELT 273
            FW+ ++ F P E   FL+F+TSCSR PLLGF  LNP IC+Q+VP    G+LPS+ATCMNLLKLPQY D+ETLR KLLYAIS+NAGF+LT
Sbjct:  297 FWQCVDEFTPREHADFLRFITSCSRQPLLGFSSLNPKICIQKVPHEPYGKLPSAATCMNLLKLPQYDDKETLRSKLLYAISSNAGFDLT 385
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BLAST of mRNA_E-fasciculatus_F_contig1170.1346.1 vs. uniprot
Match: W7TQY7_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQY7_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.170e-35
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    4 WFWEAIESFNPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEG--RLPSSATCMNLLKLPQYADRETLREKLLYAISANAGFELT 273
            WFWEA+ S+ P+EQ  FL FVTSCSR PLLGF+ LNPP+C+QRVP   EG  RLPSSATCMNLLKLP Y   E LREKLLYAI+A AGFEL+
Sbjct: 1196 WFWEALRSYTPDEQAAFLMFVTSCSRQPLLGFQHLNPPVCIQRVPLTTEGGERLPSSATCMNLLKLPAYPTPEMLREKLLYAITAGAGFELS 1287
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BLAST of mRNA_E-fasciculatus_F_contig1170.1346.1 vs. uniprot
Match: A0A2P2I0I0_9CRUS (HECT-type E3 ubiquitin transferase n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I0I0_9CRUS)

HSP 1 Score: 128 bits (322), Expect = 1.480e-32
Identity = 59/89 (66.29%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    7 FWEAIESFNPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRETLREKLLYAISANAGFELT 273
            FW+ +E FN +++GQ LKFVTSCSRPPLLGF+ L PP C+Q  P G + RLPS+ATCMNLLKLP+Y+D  TL+EKLLY+I++NAGFEL+
Sbjct: 1276 FWQVVEQFNEKQRGQLLKFVTSCSRPPLLGFKDLCPPFCIQ--PSGSDQRLPSAATCMNLLKLPEYSDPITLKEKLLYSITSNAGFELS 1362
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BLAST of mRNA_E-fasciculatus_F_contig1170.1346.1 vs. uniprot
Match: A0A3F2RBK9_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RBK9_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.050e-32
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 QWFWEAIESFNPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRETLREKLLYAISANAGFELT 273
            QWFWE +  F PE++   LKF+TSCSR PLLGF RL P IC+ +V   D+ RLPSSATCMNLLKLP Y+++E +R+KLLYAI +NAGF+L+
Sbjct:  807 QWFWEIVNEFAPEDRAALLKFITSCSRQPLLGFSRLAPQICIHQVRVEDDDRLPSSATCMNLLKLPAYSNKEAMRKKLLYAIRSNAGFDLS 897
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BLAST of mRNA_E-fasciculatus_F_contig1170.1346.1 vs. uniprot
Match: UPI000626AD88 (ubiquitin-protein ligase E3C n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI000626AD88)

HSP 1 Score: 125 bits (315), Expect = 1.290e-31
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    7 FWEAIESFNPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRETLREKLLYAISANAGFELT 273
            FW+ +E F+  ++GQ LKFVTSCSRPPLLGF+ L+PP C+Q V   D  RLP+S+TCMNLLKLP++ D +TLREKLLYAI A AGFEL+
Sbjct:  971 FWKVVEEFDDTQKGQLLKFVTSCSRPPLLGFKELDPPFCIQHVDSSD--RLPTSSTCMNLLKLPEFPDEKTLREKLLYAIQAGAGFELS 1057
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BLAST of mRNA_E-fasciculatus_F_contig1170.1346.1 vs. uniprot
Match: A0A6P3UUC9_BOMIM (HECT-type E3 ubiquitin transferase n=28 Tax=Apoidea TaxID=34735 RepID=A0A6P3UUC9_BOMIM)

HSP 1 Score: 125 bits (313), Expect = 2.410e-31
Identity = 57/89 (64.04%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    7 FWEAIESFNPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRETLREKLLYAISANAGFELT 273
            FW+ +  FN +++GQ LKFVTSCSRPPLLGF+ L+PP C+Q    G   RLP+S+TCMNLLKLP++ D +TLREKLLYAI A AGFEL+
Sbjct:  976 FWKVVNEFNDQQKGQLLKFVTSCSRPPLLGFKELDPPFCIQHA--GSVDRLPTSSTCMNLLKLPEFPDEKTLREKLLYAIQAGAGFELS 1062
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BLAST of mRNA_E-fasciculatus_F_contig1170.1346.1 vs. uniprot
Match: A0A6I9WTU4_9HYME (HECT-type E3 ubiquitin transferase n=18 Tax=Myrmicinae TaxID=34695 RepID=A0A6I9WTU4_9HYME)

HSP 1 Score: 125 bits (313), Expect = 2.410e-31
Identity = 57/89 (64.04%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    7 FWEAIESFNPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRETLREKLLYAISANAGFELT 273
            FW+ +  FN +++GQ LKFVTSCSRPPLLGF+ L+PP C+Q    G   RLP+S+TCMNLLKLP++ D +TLREKLLYAI A AGFEL+
Sbjct:  978 FWKVVNEFNDQQKGQLLKFVTSCSRPPLLGFKELDPPFCIQHA--GSVDRLPTSSTCMNLLKLPEFPDEKTLREKLLYAIQAGAGFELS 1064
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1170.1346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKM0_ECTSI1.190e-5296.70HECT-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A7S2G4K7_9STRA7.520e-3765.59HECT-type E3 ubiquitin transferase n=1 Tax=Florenc... [more]
A0A835YYA3_9STRA1.450e-3671.43HECT-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A7R9Y9Y8_9STRA4.030e-3667.42HECT-type E3 ubiquitin transferase n=1 Tax=Pinguio... [more]
W7TQY7_9STRA2.170e-3571.74HECT-type E3 ubiquitin transferase n=3 Tax=Monodop... [more]
A0A2P2I0I0_9CRUS1.480e-3266.29HECT-type E3 ubiquitin transferase n=2 Tax=Hironde... [more]
A0A3F2RBK9_9STRA5.050e-3262.64HECT-type E3 ubiquitin transferase n=3 Tax=Phytoph... [more]
UPI000626AD881.290e-3165.17ubiquitin-protein ligase E3C n=1 Tax=Orussus abiet... [more]
A0A6P3UUC9_BOMIM2.410e-3164.04HECT-type E3 ubiquitin transferase n=28 Tax=Apoide... [more]
A0A6I9WTU4_9HYME2.410e-3164.04HECT-type E3 ubiquitin transferase n=18 Tax=Myrmic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1170contigE-fasciculatus_F_contig1170:15..739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue3.5e-45
Seed eggNOG ortholog2880.D7FKM0
KEGG koko:K10589
KEGG Pathwayko04120,map04120
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0942@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927681.0113473-CDS-E-fasciculatus_F_contig1170:14..2061622927681.0113473-CDS-E-fasciculatus_F_contig1170:14..206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1170 15..206 +
1695995647.7917986-CDS-E-fasciculatus_F_contig1170:14..2061695995647.7917986-CDS-E-fasciculatus_F_contig1170:14..206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1170 15..206 +
1622927681.1188905-CDS-E-fasciculatus_F_contig1170:655..7391622927681.1188905-CDS-E-fasciculatus_F_contig1170:655..739Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1170 656..739 +
1695995647.8033423-CDS-E-fasciculatus_F_contig1170:655..7391695995647.8033423-CDS-E-fasciculatus_F_contig1170:655..739Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1170 656..739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1170.1346.1prot_E-fasciculatus_F_contig1170.1346.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1170 15..739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1170.1346.1

>prot_E-fasciculatus_F_contig1170.1346.1 ID=prot_E-fasciculatus_F_contig1170.1346.1|Name=mRNA_E-fasciculatus_F_contig1170.1346.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
QWFWEAIESFNPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDE
GRLPSSATCMNLLKLPQYADRETLREKLLYAISANAGFELT*
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mRNA from alignment at E-fasciculatus_F_contig1170:15..739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1170.1346.1 ID=mRNA_E-fasciculatus_F_contig1170.1346.1|Name=mRNA_E-fasciculatus_F_contig1170.1346.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=725bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1170:15..739+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTGGTTCTGGGAAGCGATCGAGTCGTTCAACCCCGAAGAGCAGGGGCA
GTTTCTCAAGTTCGTCACATCCTGCTCGAGGCCGCCGCTGCTGGGCTTCG
AGCGACTCAACCCCCCAATCTGTTTGCAGAGGGTCCCTGAGGGAGACGAA
GGGAGGCTGCCGTCTAGCGCAACGTGCATGAACCTGCTCAAGGTGATTGT
TTGATGGCGAGGGTTCGGTCGGCACGGGTGAAAGGCAGGCCTCGTTTCGT
TCTCTGCGGTTGTCGATTATTTCTAGTAAGCGCGTTTTGAGGAGAGGGGG
AACGTTGGCTGTGTGAATCCAGCGAACGATCCTCGCAGGGGTGCGTGAAA
AGAGCACACAATGAGACGAGCAGGAGAGAGGGAGTGTCCATCGGCGCACA
TGAAGCTAGGTACAAGTGAAGAGTTGAGCGTGTACTCTCGGACGCGACGA
AGGTGGAGAGCGTCTCGGTTAGGGCTGTTGATGTCCAGAATTGGGGACCT
TTTTCGTGTGCAGAGTTGCTCCCCAGCTTGCCCACTTTGTTCATGTTCGT
GCTGTAACCCACCTTTCTTTTTTCTCTTCTTCTCCTTCCCCGCTTTTGTT
GCTCTGGGTTTCCTTTTCTTTCGTGTGTTGCTTTCCTGCAGCTTCCCCAG
TACGCAGACCGGGAGACGTTGAGGGAGAAGCTGCTGTACGCTATCAGCGC
GAACGCTGGTTTTGAGCTGACGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1170:15..739+

>mRNA_E-fasciculatus_F_contig1170.1346.1 ID=mRNA_E-fasciculatus_F_contig1170.1346.1|Name=mRNA_E-fasciculatus_F_contig1170.1346.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1170:15..739+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTGGTTCTGGGAAGCGATCGAGTCGTTCAACCCCGAAGAGCAGGGGCA
GTTTCTCAAGTTCGTCACATCCTGCTCGAGGCCGCCGCTGCTGGGCTTCG
AGCGACTCAACCCCCCAATCTGTTTGCAGAGGGTCCCTGAGGGAGACGAA
GGGAGGCTGCCGTCTAGCGCAACGTGCATGAACCTGCTCAAGCAGTGGTT
CTGGGAAGCGATCGAGTCGTTCAACCCCGAAGAGCAGGGGCAGTTTCTCA
AGTTCGTCACATCCTGCTCGAGGCCGCCGCTGCTGGGCTTCGAGCGACTC
AACCCCCCAATCTGTTTGCAGAGGGTCCCTGAGGGAGACGAAGGGAGGCT
GCCGTCTAGCGCAACGTGCATGAACCTGCTCAAGCTTCCCCAGTACGCAG
ACCGGGAGACGTTGAGGGAGAAGCTGCTGTACGCTATCAGCGCGAACGCT
GGTTTTGAGCTGACGTAACTTCCCCAGTACGCAGACCGGGAGACGTTGAG
GGAGAAGCTGCTGTACGCTATCAGCGCGAACGCTGGTTTTGAGCTGACGT
AA
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